Bredesen Center for Interdisciplinary Research and Graduate Education
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Comparative analyses of the secondary structures of synthetic and intracellular yeast MFA2 mRNAs.
Proceedings of the National Academy of Sciences of the United States of America Dec, 1998 | Pubmed ID: 9843938
Fingerprinting of prokaryotic 16S rRNA genes using oligodeoxyribonucleotide microarrays and virtual hybridization.
Nucleic acids research Jan, 2003 | Pubmed ID: 12527788
Genomes to Life "Center for Molecular and Cellular Systems": a research program for identification and characterization of protein complexes.
Omics : a journal of integrative biology , 2002 | Pubmed ID: 12630408
AFM imaging of bacteria in liquid media immobilized on gelatin coated mica surfaces.
Ultramicroscopy Oct-Nov, 2003 | Pubmed ID: 12801673
Optimized beadmilling of tissues for high-throughput RNA production and microarray-based analyses.
Analytical biochemistry Sep, 2004 | Pubmed ID: 15301954
Evaluation of a surface-sampling probe electrospray mass spectrometry system for the analysis of surface-deposited and affinity-captured proteins.
Rapid communications in mass spectrometry : RCM , 2006 | Pubmed ID: 16521171
The near-naked hairless (Hr(N)) mutation disrupts hair formation but is not due to a mutation in the Hairless coding region.
The Journal of investigative dermatology Jul, 2007 | Pubmed ID: 17330134
Nano-enabled synthetic biology.
Molecular systems biology , 2007 | Pubmed ID: 17625513
Controlling the Dimensions of Carbon Nanofiber Structures through the Electropolymerization of Pyrrole.
Synthetic metals Apr, 2007 | Pubmed ID: 18431459
A general system for studying protein-protein interactions in Gram-negative bacteria.
Journal of proteome research Aug, 2008 | Pubmed ID: 18590317
Actuatable membranes based on polypyrrole-coated vertically aligned carbon nanofibers.
ACS nano Feb, 2008 | Pubmed ID: 19206624
Positional control of catalyst nanoparticles for the synthesis of high density carbon nanofiber arrays.
Carbon , 2008 | Pubmed ID: 19448842
Effects of ultramicroelectrode dimensions on the electropolymerization of polypyrrole.
Journal of applied physics Jun, 2009 | Pubmed ID: 19657404
An in vivo imaging-based assay for detecting protein interactions over a wide range of binding affinities.
Analytical biochemistry Dec, 2009 | Pubmed ID: 19698693
Development and fabrication of nanoporous silicon-based bioreactors within a microfluidic chip.
Lab on a chip May, 2010 | Pubmed ID: 20390137
Silver nanocrystallites: biofabrication using Shewanella oneidensis, and an evaluation of their comparative toxicity on gram-negative and gram-positive bacteria.
Environmental science & technology Jul, 2010 | Pubmed ID: 20509652
Surface charge- and space-dependent transport of proteins in crowded environments of nanotailored posts.
ACS nano Jun, 2010 | Pubmed ID: 20515056
Atomic force microscopy of biological samples.
Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology Nov-Dec, 2010 | Pubmed ID: 20672388
Effects of engineered cerium oxide nanoparticles on bacterial growth and viability.
Applied and environmental microbiology Dec, 2010 | Pubmed ID: 20952651
Characterization of cell surface and extracellular matrix remodeling of Azospirillum brasilense chemotaxis-like 1 signal transduction pathway mutants by atomic force microscopy.
FEMS microbiology letters Jan, 2011 | Pubmed ID: 21105907
Biofabrication of discrete spherical gold nanoparticles using the metal-reducing bacterium Shewanella oneidensis.
Acta biomaterialia May, 2011 | Pubmed ID: 21241833
Cell Free Translation in Engineered Picoliter Volume Containers.
Annual ORNL Biomedical Science and Engineering Center Conference ORNL Biomedical Science and Engineering Center Conference Jun, 2009 | Pubmed ID: 21278819
Effects of sub-minimum inhibitory concentrations of ciprofloxacin on enteroaggregative Escherichia coli and the role of the surface protein dispersin.
International journal of antimicrobial agents Jul, 2011 | Pubmed ID: 21570813
Model for biological communication in a nanofabricated cell-mimic driven by stochastic resonance.
Nano communication networks Mar, 2011 | Pubmed ID: 21731597
Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types.
Applied and environmental microbiology Sep, 2011 | Pubmed ID: 21764952
Monodispersed biocompatible silver sulfide nanoparticles: facile extracellular biosynthesis using the γ-proteobacterium, Shewanella oneidensis.
Acta biomaterialia Dec, 2011 | Pubmed ID: 21798382
The chemotaxis-like Che1 pathway has an indirect role in adhesive cell properties of Azospirillum brasilense.
FEMS microbiology letters Oct, 2011 | Pubmed ID: 22092709
Enzyme reactions in nanoporous, picoliter volume containers.
Analytical chemistry Jan, 2012 | Pubmed ID: 22148720
Expression optimization and synthetic gene networks in cell-free systems.
Nucleic acids research Dec, 2011 | Pubmed ID: 22180537
Cytotoxicity induced by engineered silver nanocrystallites is dependent on surface coatings and cell types.
Langmuir : the ACS journal of surfaces and colloids Feb, 2012 | Pubmed ID: 22216981
Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness.
Molecular plant-microbe interactions : MPMI Jun, 2012 | Pubmed ID: 22375709
Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides.
Journal of bacteriology May, 2012 | Pubmed ID: 22493196
Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.
Journal of bacteriology Nov, 2012 | Pubmed ID: 23045501
Relating nanomaterial properties and microbial toxicity.
Nanoscale Jan, 2013 | Pubmed ID: 23203029
Layer-by-layer templated assembly of silica at the nanoscale.
Langmuir : the ACS journal of surfaces and colloids Feb, 2013 | Pubmed ID: 23360298
Enteroaggregative Escherichia coli: surface protein dispersin increases bacterial uptake of ciprofloxacin.
International journal of antimicrobial agents Nov, 2013 | Pubmed ID: 24011504
Multi-input regulation and logic with T7 promoters in cells and cell-free systems.
PloS one , 2013 | Pubmed ID: 24194933
Monodisperse alginate microgel formation in a three-dimensional microfluidic droplet generator.
Biomicrofluidics , 2012 | Pubmed ID: 24198865
Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences.
Bioinformatics (Oxford, England) Oct, 2014 | Pubmed ID: 24930142
Nanostructured silicon membranes for control of molecular transport.
Journal of vacuum science and technology. B, Nanotechnology & microelectronics : materials, processing, measurement, & phenomena : JVST B Nov, 2010 | Pubmed ID: 24932436
Microstructured block copolymer surfaces for control of microbe adhesion and aggregation.
Biosensors Mar, 2014 | Pubmed ID: 25587410
New surface radiolabeling schemes of super paramagnetic iron oxide nanoparticles (SPIONs) for biodistribution studies.
Nanoscale Apr, 2015 | Pubmed ID: 25790032
Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment.
Frontiers in microbiology , 2015 | Pubmed ID: 26528266
Fabrication of nanoporous membranes for tuning microbial interactions and biochemical reactions.
Journal of vacuum science and technology. B, Nanotechnology & microelectronics : materials, processing, measurement, & phenomena : JVST B Nov, 2015 | Pubmed ID: 26543684
Microstencils to generate defined, multi-species patterns of bacteria.
Biomicrofluidics Nov, 2015 | Pubmed ID: 26594264
Toward Microfluidic Reactors for Cell-Free Protein Synthesis at the Point-of-Care.
Small (Weinheim an der Bergstrasse, Germany) Feb, 2016 | Pubmed ID: 26690885
A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization.
Frontiers in microbiology , 2016 | Pubmed ID: 27148182
Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development.
PloS one , 2016 | Pubmed ID: 27152511
Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System.
Frontiers in plant science , 2016 | Pubmed ID: 27200001
While-you-wait proteins? Producing biomolecules at the point of need.
Expert review of proteomics Aug, 2016 | Pubmed ID: 27402489
Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis.
Applied and environmental microbiology Sep, 2016 | Pubmed ID: 27422831
β-(1,3)-Glucan Unmasking in Some Candida albicans Mutants Correlates with Increases in Cell Wall Surface Roughness and Decreases in Cell Wall Elasticity.
Infection and immunity Jan, 2017 | Pubmed ID: 27849179
Automated Interpretation and Extraction of Topographic Information from Time of Flight Secondary Ion Mass Spectrometry Data.
Scientific reports 12, 2017 | Pubmed ID: 29213083
Abiotic Stresses Shift Belowground -Associated Bacteria Toward a Core Stress Microbiome.
mSystems Jan-Feb, 2018 | Pubmed ID: 29404422
Nano-Enabled Approaches to Chemical Imaging in Biosystems.
Annual review of analytical chemistry (Palo Alto, Calif.) 06, 2018 | Pubmed ID: 29490189
Elucidating Duramycin's Bacterial Selectivity and Mode of Action on the Bacterial Cell Envelope.
Frontiers in microbiology , 2018 | Pubmed ID: 29491859
Exploration of the Biosynthetic Potential of the Microbiome.
mSystems Sep-Oct, 2018 | Pubmed ID: 30320216
Itaconic acid degradation in : the role of unexpected bioconversion pathways.
Fungal biology and biotechnology , 2019 | Pubmed ID: 30622724
Loss of carotenoids from membranes of Pantoea sp. YR343 results in altered lipid composition and changes in membrane biophysical properties.
Biochimica et biophysica acta. Biomembranes 07, 2019 | Pubmed ID: 31095944
Increasing access to microfluidics for studying fungi and other branched biological structures.
Fungal biology and biotechnology , 2019 | Pubmed ID: 31198578
Pore-scale hydrodynamics influence the spatial evolution of bacterial biofilms in a microfluidic porous network.
PloS one , 2019 | Pubmed ID: 31246972
Label-free time- and space-resolved exometabolite sampling of growing plant roots through nanoporous interfaces.
Scientific reports 07, 2019 | Pubmed ID: 31312009
Microfluidics and Metabolomics Reveal Symbiotic Bacterial-Fungal Interactions Between and Include Metabolite Exchange.
Frontiers in microbiology , 2019 | Pubmed ID: 31632357
Computationally Guided Discovery and Experimental Validation of Indole-3-acetic Acid Synthesis Pathways.
ACS chemical biology 12, 2019 | Pubmed ID: 31693336
A carotenoid-deficient mutant of the plant-associated microbe Pantoea sp. YR343 displays an altered membrane proteome.
Scientific reports 09, 2020 | Pubmed ID: 32917935
Elucidating the potential of crude cell extracts for producing pyruvate from glucose.
Synthetic biology (Oxford, England) , 2018 | Pubmed ID: 32995514
Targeted Growth Medium Dropouts Promote Aromatic Compound Synthesis in Crude Cell-Free Systems.
ACS synthetic biology 11, 2020 | Pubmed ID: 33044063
Machine learning-based prediction of enzyme substrate scope: Application to bacterial nitrilases.
Proteins 03, 2021 | Pubmed ID: 33118210
A lysate proteome engineering strategy for enhancing cell-free metabolite production.
Metabolic engineering communications Jun, 2021 | Pubmed ID: 33552897
Formation, characterization and modeling of emergent synthetic microbial communities.
Computational and structural biotechnology journal , 2021 | Pubmed ID: 33995895
Advances and perspectives in discovery and functional analysis of small secreted proteins in plants.
Horticulture research Jun, 2021 | Pubmed ID: 34059650
Jayde A. Aufrecht1,2,
Jennifer M. Ryan3,
Sahar Hasim4,
David P. Allison2,3,
Andreas Nebenführ3,
Mitchel J. Doktycz1,2,
Scott T. Retterer1,2
1Bredesen Center for Interdisciplinary Research and Graduate Education, University of Tennessee,
2Bioscience Division and Center for Nanophase Materials Sciences, Oak Ridge national Laboratory,
3Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee,
4Department of Microbiology, University of Tennessee
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