Kristina Gruden

Molecular basis of Colorado potato beetle adaptation to potato plant defence at the level of digestive cysteine proteinases.

Real-time polymerase chain reaction detection of cauliflower mosaic virus to complement the 35S screening assay for genetically modified organisms.

Critical points of DNA quantification by real-time PCR--effects of DNA extraction method and sample matrix on quantification of genetically modified organisms.

Calculation of measurement uncertainty in quantitative analysis of genetically modified organisms using intermediate precision--a practical approach.

Adaptation of the MapMan ontology to biotic stress responses: application in solanaceous species.

Comparison of different real-time PCR chemistries and their suitability for detection and quantification of genetically modified organisms.

Detection of nonauthorized genetically modified organisms using differential quantitative polymerase chain reaction: application to 35S in maize.

Expression microarrays in plant-virus interaction.

Sensitive detection of multiple rotavirus genotypes with a single reverse transcription-real-time quantitative PCR assay.

NAIMA: target amplification strategy allowing quantitative on-chip detection of GMOs.

Finding differentially expressed genes in two-channel DNA microarray datasets: how to increase reliability of data preprocessing.

PVY(NTN) elicits a diverse gene expression response in different potato genotypes in the first 12 h after inoculation.

Real-time quantitative PCR based sensitive detection and genotype discrimination of Pepino mosaic virus.

Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: extending MapMan ontology for grapevine.

'Bois noir' phytoplasma induces significant reprogramming of the leaf transcriptome in the field grown grapevine.

NAIMA as a solution for future GMO diagnostics challenges.

Comparison of nine different real-time PCR chemistries for qualitative and quantitative applications in GMO detection.

Gene expression data analysis using closed item set mining for labeled data.

Revealing fosfomycin primary effect on Staphylococcus aureus transcriptome: modulation of cell envelope biosynthesis and phosphoenolpyruvate induced starvation.

A panel of real-time PCR assays for specific detection of three phytoplasmas from the apple proliferation group.

A one-step reverse transcription real-time PCR assay for the detection and quantitation of Grapevine fanleaf virus.

Dynamics of responses in compatible potato-Potato virus Y interaction are modulated by salicylic acid.

A "crossomics" study analysing variability of different components in peripheral blood of healthy caucasoid individuals.

Comparison and transfer testing of multiplex ligation detection methods for GM plants.

A complex of genes involved in adaptation of Leptinotarsa decemlineata larvae to induced potato defense.

Human mesenchymal stem cells exploit the immune response mediating chemokines to impact the phenotype of glioblastoma.

Real-time PCR for specific detection of three phytoplasmas from the apple proliferation group.

Signalling network construction for modelling plant defence response.

Quantitative analysis of food and feed samples with droplet digital PCR.

GoMapMan: integration, consolidation and visualization of plant gene annotations within the MapMan ontology.

β-1,3-glucanase class III promotes spread of PVY and improves protein production.

Inhibition of the growth of colorado potato beetle larvae by macrocypins, protease inhibitors from the parasol mushroom.

SACE_5599, a putative regulatory protein, is involved in morphological differentiation and erythromycin production in Saccharopolyspora erythraea.

Insertion of a specific fungal 3'-phosphoadenosine-5'-phosphatase motif into a plant homologue improves halotolerance and drought tolerance of plants.

Plant defence model revisions through iterative minimisation of constraint violations.

GMOseek: a user friendly tool for optimized GMO testing.

Involvement of potato (Solanum tuberosum L.) MKK6 in response to potato virus Y.

Optimising droplet digital PCR analysis approaches for detection and quantification of bacteria: a case study of fire blight and potato brown rot.

Identification of plasma biomarker candidates in glioblastoma using an antibody-array-based proteomic approach.

GMO quantification: valuable experience and insights for the future.

Potato virus Y infection hinders potato defence response and renders plants more vulnerable to Colorado potato beetle attack.

Expression analysis of all protease genes reveals cathepsin K to be overexpressed in glioblastoma.

Fluorescently Tagged Potato virus Y: A Versatile Tool for Functional Analysis of Plant-Virus Interactions.

Sequencing platform modeling and analysis.

Analysis of Glioblastoma Patients' Plasma Revealed the Presence of MicroRNAs with a Prognostic Impact on Survival and Those of Viral Origin.

BioMiner: Paving the Way for Personalized Medicine.

Clitocypin, a fungal cysteine protease inhibitor, exerts its insecticidal effect on Colorado potato beetle larvae by inhibiting their digestive cysteine proteases.

Rule-Based Design of Plant Expression Vectors Using GenoCAD.

Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction.

Roles of the crotonyl-CoA carboxylase/reductase homologues in acetate assimilation and biosynthesis of immunosuppressant FK506 in Streptomyces tsukubaensis.

Transcriptome study and identification of potential marker genes related to the stable expression of recombinant proteins in CHO clones.

Heterogeneous glioblastoma cell cross-talk promotes phenotype alterations and enhanced drug resistance.

Primary Metabolism, Phenylpropanoids and Antioxidant Pathways Are Regulated in Potato as a Response to Potato virus Y Infection.

RNA-dependent RNA polymerase 1 in potato (Solanum tuberosum) and its relationship to other plant RNA-dependent RNA polymerases.

System level analysis of cacao seed ripening reveals a sequential interplay of primary and secondary metabolism leading to polyphenol accumulation and preparation of stress resistance.

Solanum venturii, a suitable model system for virus-induced gene silencing studies in potato reveals StMKK6 as an important player in plant immunity.

Metabolic Consequences of Infection of Grapevine (Vitis vinifera L.) cv. "Modra frankinja" with Flavescence Dorée Phytoplasma.

Integrated omics approaches provide strategies for rapid erythromycin yield increase in Saccharopolyspora erythraea.

GenoCAD Plant Grammar to Design Plant Expression Vectors for Promoter Analysis.

Erratum to: Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction.

quantGenius: implementation of a decision support system for qPCR-based gene quantification.

Comparison between Proteome and Transcriptome Response in Potato (Solanum tuberosum L.) Leaves Following Potato Virus Y (PVY) Infection.

Plant X-tender: An extension of the AssemblX system for the assembly and expression of multigene constructs in plants.

Salicylic Acid Perturbs sRNA-Gibberellin Regulatory Network in Immune Response of Potato to Infection.

A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae).

Cell Death Is Not Sufficient for the Restriction of Potato Virus Y Spread in Hypersensitive Response-Conferred Resistance in Potato.

Network Modeling Unravels Mechanisms of Crosstalk between Ethylene and Salicylate Signaling in Potato.

DiNAR: revealing hidden patterns of plant signalling dynamics using Differential Network Analysis in R.

MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis.

Interactive exploration of heterogeneous biological networks with Biomine Explorer.

Structural basis for the multitasking nature of the potato virus Y coat protein.

Multiomics analysis of tolerant interaction of potato with potato virus Y.

Potato Virus Y Infection Alters Small RNA Metabolism and Immune Response in Tomato.

Plant Molecular Responses to Potato Virus Y: A Continuum of Outcomes from Sensitivity and Tolerance to Resistance.

Enabling reusability of plant phenomic datasets with MIAPPE 1.1.

Roles of small RNAs in the establishment of tolerant interaction between plants and viruses.

Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato.

Precision transcriptomics of viral foci reveals the spatial regulation of immune-signaling genes and identifies RBOHD as an important player in the incompatible interaction between potato virus Y and potato.

Ménage à Trois: Unraveling the Mechanisms Regulating Plant-Microbe-Arthropod Interactions.

Editorial overview: Resistance is not futile: an update on antiviral strategies in plants.

Validating the Potential of Double-Stranded RNA Targeting Colorado Potato Beetle Gene in Laboratory and Field Trials.

Incorporating RNA-Seq transcriptomics into glycosylation-integrating metabolic network modelling kinetics: Multiomic Chinese hamster ovary (CHO) cell bioreactors.

Physiological and Proteomic Signatures Reveal Mechanisms of Superior Drought Resilience in Pearl Millet Compared to Wheat.

The need for standardisation in life science research - an approach to excellence and trust.

Generation and Functional Analysis of Potato Virus Y mutants.

Biosensors: A Sneak Peek into Plant Cell's Immunity.

New Cross-Talks between Pathways Involved in Grapevine Infection with ' Phytoplasma solani' Revealed by Temporal Network Modelling.

Differential Response of Grapevine to Infection with ' Phytoplasma solani' in Early and Late Growing Season through Complex Regulation of mRNA and Small RNA Transcriptomes.

Prunus persica plant endogenous peptides PpPep1 and PpPep2 cause PTI-like transcriptome reprogramming in peach and enhance resistance to Xanthomonas arboricola pv. pruni.

Insect pest management in the age of synthetic biology.

Methodologies for Discovery and Quantitative Profiling of sRNAs in Potato.

Direct regulation of shikimate, early phenylpropanoid, and stilbenoid pathways by Subgroup 2 R2R3-MYBs in grapevine.

Plant X-tender Toolbox for the Assembly and Expression of Multiple Transcriptional Units in Plants.

Fermentative Indole Production via Bacterial Tryptophan Synthase Alpha Subunit and Plant Indole-3-Glycerol Phosphate Lyase Enzymes.

Analysis of Virus Spread Around the Cell Death Zone at Spatiotemporal Resolution Using Confocal Microscopy.

PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases.

Physiological and Transcriptional Responses to Saline Irrigation of Young 'Tempranillo' Vines Grafted Onto Different Rootstocks.

Chloroplast redox state changes mark cell-to-cell signaling in the hypersensitive response.

TGA transcription factors-Structural characteristics as basis for functional variability.

CRISPR/Cas9-mediated fine-tuning of miRNA expression in tetraploid potato.

Toward learning the principles of plant gene regulation.

Organelles and phytohormones: a network of interactions in plant stress responses.

Corrigendum: Physiological and transcriptional responses to saline irrigation of young 'Tempranillo' vines grafted onto different rootstocks.

pISA-tree - a data management framework for life science research projects using a standardised directory tree.

Transcriptional deregulation of stress-growth balance in biofactories producing insect sex pheromones.

A mini-TGA protein modulates gene expression through heterogeneous association with transcription factors.

Systems Biology in ELIXIR: modelling in the spotlight.

Candidate pathogenicity factor/effector proteins of ' Phytoplasma solani' modulate plant carbohydrate metabolism, accelerate the ascorbate-glutathione cycle, and induce autophagosomes.

Cell-type proteomic and metabolomic resolution of early and late grain filling stages of wheat endosperm.

Transcriptional and epigenetic changes during tomato yellow leaf curl virus infection in tomato.

Transcriptome-informed identification and characterization of - and -isoprenyl diphosphate synthase genes.

Stress Knowledge Map: A knowledge graph resource for systems biology analysis of plant stress responses.

Protein complexes from edible mushrooms as a sustainable potato protection against coleopteran pests.