Nozomu Yachie

Computational analysis of microRNA targets in Caenorhabditis elegans.

Prediction of non-coding and antisense RNA genes in Escherichia coli with Gapped Markov Model.

HybGFS: a hybrid method for genome-fingerprint scanning.

Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome using artificial neural networks.

On the interplay of gene positioning and the role of rho-independent terminators in Escherichia coli.

Alignment-based approach for durable data storage into living organisms.

SPLITS: a new program for predicting split and intron-containing tRNA genes at the genome level.

In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs.

eXpanda: an integrated platform for network analysis and visualization.

Bioinformatic analysis of post-transcriptional regulation by uORF in human and mouse.

Computational analysis of microRNA-mediated antiviral defense in humans.

Permuted tRNA genes expressed via a circular RNA intermediate in Cyanidioschyzon merolae.

Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order thermoproteales.

Stabilizing synthetic data in the DNA of living organisms.

In silico analysis of phosphoproteome data suggests a rich-get-richer process of phosphosite accumulation over evolution.

Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data.

Integrative features of the yeast phosphoproteome and protein-protein interaction map.

Computational analysis suggests a highly bendable, fragile structure for nucleosomal DNA.

Tight associations between transcription promoter type and epigenetic variation in histone positioning and modification.

Comprehensive Analysis of the SUL1 Promoter of Saccharomyces cerevisiae.

Pooled-matrix protein interaction screens using Barcode Fusion Genetics.

Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems.

Robotic crowd biology with Maholo LabDroids.

Systematic analysis of Ca homeostasis in based on chemical-genetic interaction profiles.

Double Selection Enhances the Efficiency of Target-AID and Cas9-Based Genome Editing in Yeast.

Engineered CRISPR-Cas9 nuclease with expanded targeting space.

Fast and global detection of periodic sequence repeats in large genomic resources.

: A Computational Workflow for Designing Libraries of Guide RNAs for CRISPR-Mediated Base Editing.

Complete Genome Sequence of sp. Strain KH172YL61, Isolated from Deep-Sea Sediments in the Nankai Trough, Japan.

DNA event recorders send past information of cells to the time of observation.

DNA barcodes evolve for high-resolution cell lineage tracing.

The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs.

Highly Combinatorial Genetic Interaction Analysis Reveals a Multi-Drug Transporter Influence Network.

A genome-scale CRISPR/Cas9 knockout screening reveals SH3D21 as a sensitizer for gemcitabine.