Fabrication of Anisotropic Polymeric Artificial Antigen Presenting Cells for CD8+ T Cell Activation

Summary

Here, we present a protocol to quickly and reproducibly generate biologically inspired, biodegradable articifical antigen presenting cells (aAPC) with tunable size, shape, and surface protein presentation for T cell expansion ex vivo or in vivo.

Abstract

Artificial antigen presenting cells (aAPC) are a promising platform for immune modulation due to their potent ability to stimulate T cells. Acellular substrates offer key advantages over cell-based aAPC, including precise control of signal presentation parameters and physical properties of the aAPC surface to modulate its interactions with T cells. aAPC constructed from anisotropic particles, particularly ellipsoidal particles, have been shown to be more effective than their spherical counterparts at stimulating T cells due to increased binding and larger surface area available for T cell contact, as well as reduced nonspecific uptake and enhanced pharmacokinetic properties. Despite increased interest in anisotropic particles, even widely accepted methods of generating anisotropic particles such as thin-film stretching can be challenging to implement and use reproducibly.

To this end, we describe a protocol for the rapid, standardized fabrication of biodegradable anisotropic particle-based aAPC with tunable size, shape, and signal presentation for T cell expansion ex vivo or in vivo, along with methods to characterize their size, morphology, and surface protein content, and to assess their functionality. This approach to fabricating anisotropic aAPC is scalable and reproducible, making it ideal for generating aAPC for "off-the-shelf" immunotherapies.

Introduction

Artificial antigen presenting cells (aAPC) have shown promise as immunomodulatory agents because they can generate a robust antigen-specific T cell response. Essential to these platforms are their ability to efficiently present crucial signals for T cell activation. Acellular aAPC are an attractive alternative to cell-based aAPC because they are easier and less costly to fabricate, face fewer challenges during scale-up and translation, and alleviate risks associated with cell-based therapies. Acellular aAPC also allow for a high degree of control over signal presentation parameters and physical properties of the surface that will interface with T cells¹.

aAPC must recapitulate a minimum of two signals essential for T cell activation. Signal 1 provides antigen recognition and occurs when the T cell receptor (TCR) recognizes and engages with an MHC class I or II bearing its cognate antigen, culminating in signaling through the TCR complex. To bypass the antigen specificity requirement, aAPC systems often bear an agonistic monoclonal antibody against the CD3 receptor, which nonspecifically stimulates the TCR complex. Recombinant forms of MHC, particularly MHC multimers, have also been used on the surface of aAPC to provide antigen specificity^2,3. Signal 2 is a costimulatory signal that directs T cell activity. To provide the costimulation necessary for T cell activation, the CD28 receptor is generally stimulated with an agonistic antibody presented on the aAPC surface, although other costimulatory receptors such as 4-1BB have been successfully targeted⁴. Signal 1 and 2 proteins are typically immobilized on the surface of rigid particles to synthesize aAPC. Historically, aAPC have been fabricated from a variety of materials, including polystyrene^4,5 and iron dextran⁶. Newer systems utilize biodegradable polymers like poly(lactic-co-glycolic acid) (PLGA) to generate aAPC that can be easily coupled to signal proteins, are suitable for direct administration in vivo, and can facilitate the sustained release of encapsulated cytokines or soluble factors to augment T cell activation^7,8.

In addition to the presence of necessary signal proteins, receptor engagement over a sufficiently large surface area during the aAPC/T cell interaction is essential for T cell activation. Thus, physical parameters of the aAPC such as size and shape drastically alter their available contact area and affect their ability to stimulate T cells. Micron-sized aAPC have been shown to be more effective at stimulating T cells than their nanoscale counterparts^9,10. However, nano-aAPC can have superior biodistribution and better drainage to the lymph nodes that may enhance their performance in vivo over micro-aAPC¹¹. Shape is another variable of interest in particle-based aAPC systems. Anisotropic aAPC have recently been shown to be more effective than isotropic particles at stimulating T cells, mainly due to enhanced interaction with target cells coupled with reduced non-specific cell uptake. Cells preferentially bind to the long axis of ellipsoidal particles, and the larger radius of curvature and flatter surface allow for more contact between the aAPC and T cell¹². The long axis of ellipsoidal particles also discourages phagocytosis, resulting in increased circulation time compared to spherical particles following in vivo administration^12,13. Because of these advantages, ellipsoidal particles mediate greater expansion of antigen-specific T cells in vitro and in vivo compared to spherical particles, an effect observed at both the micro and nanoscales^12,13. There are various strategies to fabricate anisotropic particles, but thin-film stretching is a simple, widely accepted method used to generate a range of diverse particle shapes¹⁴. Following synthesis, particles are cast into films and stretched in one or two dimensions at a temperature above the glass transition temperature of the particle material. The film is then dissolved to retrieve the particles. Despite growing interest in anisotropic particles, current approaches for fabricating particle-based aAPC are mostly limited to isotropic systems, and methods of altering particle shape can be difficult to implement, incompatible with certain aAPC synthesis strategies, and lack precision and reproducibility¹⁵. Our thin-film stretching technique can be performed manually or in an automated fashion to rapidly generate anisotropic particles synthesized from a variety of biodegradable polymers, stretched to a desired aspect ratio in one or two dimensions¹⁵.

Based on our previous work, we developed a biodegradable particle-based approach combined with scalable thin-film stretching technology to rapidly generate aAPC with tunable size and shape in a standardized fashion for T cell expansion ex vivo or in vivo. Our protein conjugation strategy can be used to couple any protein(s) of interest to carboxyl groups on the particle surface at a desired density, giving this aAPC system a high degree of flexibility. We also describe methods to characterize the size, morphology, and surface protein content of aAPC, and to evaluate their functionality in vitro. This protocol can be easily adapted to expand immune cells ex vivo or in vivo for a variety of immunotherapeutic applications.

Protocol

All methods described here have been approved by the Institutional Animal Care and Use Committee (IACUC) of Johns Hopkins University.

1. Fabrication of Spherical PLGA Particles of Tunable Size

1. Preparation of materials for particle synthesis
   1. Prepare 5% w/w polyvinyl alcohol (PVA) solution.
      1. Add 500 mL of deionized (DI) water to an Erlenmeyer flask with a magnetic stir bar and place on hot plate stirrer at 500 rpm and monitor temperature with thermometer. Cover flask with tinfoil to prevent evaporation.
      2. When water temperature reaches approximately 70 °C, add 25 g total of PVA in small batches over time, waiting for PVA to dissolve before adding more.
      3. Once all PVA is dissolved (typically 30-60 min), let solution cool and sterile filter. Store at 4 °C for future use.
   2. Prepare film casting solution of 10% w/w PVA and 2% w/w glycerol.
      1. Add 500 mL of DI water to an Erlenmeyer flask with a magnetic stir bar. Add 8 mL of glycerol at room temperature and mix by trituration.
      2. Place flask on hot plate stirrer at 500 rpm and monitor temperature with thermometer. Cover flask with tinfoil to prevent evaporation.
      3. When solution temperature reaches approximately 70 °C, add 50 g total of PVA in small batches over time, waiting for PVA to dissolve before adding more.
      4. Once all PVA is dissolved (typically 60 min), let solution cool and sterile filter using a bottle-top vacuum filter system with a pore size of 0.22 μm. Store at room temperature for future use.
   3. Prepare a 50 mL 1% w/w PVA solution. Add 40 mL of DI water and 10 mL of 5% PVA solution (made in 1.1.1) to a 100-150 mL beaker.
   4. Prepare a 100 mL 0.5% w/w PVA solution. Add 90 mL of DI water and 10 mL of 5% PVA solution to a 150-250 mL beaker.
   5. Add a magnetic stir bar to the 0.5% PVA solution and place in a chemical hood on a stir plate at room temperature at 500 rpm.
2. Microparticle synthesis
   1. Weigh out 100 mg of poly(lactic-co-glycolic acid) (PLGA) into a scintillation vial and dissolve in 5 mL of dichloromethane (DCM). Vortex to dissolve the PLGA.
   2. Place homogenizer in the 50 mL 1% PVA solution so that the homogenizer is as close to the bottom of the beaker as possible without touching it. Turn on homogenizer and adjust to desired speed—3,200 rpm for 5 μm diameter particles, 5,000 rpm for 3 μm, 15,000 rpm for 1 μm (increasing homogenization speed decreases particle size). Once at the desired speed, add the PLGA solution to the beaker and homogenize for 1 minute.
   3. After homogenization, pour the 1% PVA, PLGA microparticle solution into the 100 mL 0.5% PVA solution on a stir plate and stir for at least 4 hours for solvent evaporation in a chemical hood.
   4. Wash the particles 3 times in DI water.
      1. Pour the particle solution into 50 mL conical tubes and centrifuge at 3000 x g for 5 minutes. Pour out supernatant and add approximately 20 mL of DI water.
      2. Resuspend particles by vortexing. Once resuspended, fill up conical tubes to 50 mL with DI water.
      3. Wash again the same way two more times.
3. Nanoparticle synthesis
   1. Weigh out 200 mg of PLGA into a scintillation vial and dissolve in 5 mL of DCM. Vortex to dissolve the PLGA.
   2. Place a beaker with 50 mL 1% PVA solution into container filled with ice. Place the sonicator probe in the beaker as close to the bottom as possible without touching. Begin sonication and immediately add PLGA solution into the beaker. Sonicate with a power of 12 W for 2 minutes to generate nanoparticles with an approximate diameter of 200 nm.
   3. After sonication, pour the 1% PVA, PLGA nanoparticle solution into a 100 mL 0.5% PVA solution on a stir plate and stir for at least 4 hours for solvent evaporation in a chemical hood.
   4. Pour the particle solution into 50 mL conical tubes and centrifuge at 3,000 x g for 5 minutes to remove microparticles. Remove supernatant and pour into high speed centrifuge tubes.
   5. Wash the particles 3 times with DI water. Centrifuge at 40,000 x g for 15 minutes. Pour out supernatant and resuspend in DI water by vortexing. Wash again the same way two more times.

2. Fabrication of Polymeric Particles of Tunable Shape

1. After washing PLGA particles three times, resuspend the particles in approximately 1 mL of DI water. Add the film casting solution to particles for final particle concentration of 2.5 mg/mL particles.
2. Pipette the particle suspension in 10 mL aliquots into 75 x 50 mm rectangular Petri dishes for one-dimensional stretching or in 15 mL aliquots into 100 x 100 mm square Petri dishes for two-dimensional stretching. Remove bubbles by either pipette or pushing bubbles to the side and let films dry overnight in a chemical hood.
3. Once films have dried, remove films from plastic dishes with tweezers and cut off edges of films with scissors. Save edges in a 50 mL conical tube to be used as spherical particles.
   1. Load a film onto the automated thin film stretching device by mounting a film onto aluminum blocks. For 1D stretching, mount film onto aluminum blocks of one axis of the stretcher (Figure 2) by placing two short edges of film in between two pieces of neoprene rubber. Using an Allen wrench, screw the metal grips on top of rubber to hold the film in place. For 2D stretching, mount all four edges onto four aluminum blocks to stretch on both axes (Figure 2).
   2. Measure and record the length of film in between aluminum blocks on one axis for 1D stretching or both axes for 2D stretching. Calculate the distance required to stretch the film in one or two directions based on desired fold-stretch.
   3. Place the film-loaded stretching device in an oven at 90 °C and bring the film to temperature over 10 minutes. Place a large beaker in the oven with a small amount of water.
   4. Stretch film.
   5. When stretching is completed, remove the stretching device from oven and let the film cool to room temperature for 20 minutes.
   6. For 1D stretching, cut the film out of the stretching device at the edges. For 2D stretching, cut out and save the center square of film that is uniformly stretched on both axes. Place films in conical tubes with 2 films per tube and discard the rest of the film.
   7. Add approximately 25 mL of DI water to each conical tube and vortex until the films are dissolved.
   8. Once the films are dissolved, wash particles 3 times with DI water.
      1. For microparticles, fill up conical tubes to 50 mL and centrifuge at 3000 x g for 5 minutes, pour out supernatant, add approximately 20 mL of DI water, and vortex to resuspend particles.
      2. For nanoparticles, transfer particles to high speed centrifuge tubes and centrifuge at 40,000 x g for 15 minutes, pour out supernatant, add approximately 20 mL of DI water, and vortex to resuspend particles.
   9. After the third wash, resuspend particles in approximately 1 mL of DI water. Record the weight of the microcentrifuge tube and add particles to the tube. Freeze particles in a -80 °C freezer for 1 hour or flash freeze in liquid nitrogen. Once frozen, lyophilize particles overnight.
   10. Once lyophilized, weigh particles in the microcentrifuge tube and subtract recorded weight of the empty tube to determine the weight of lyophilized particles.

3. Surface Protein Conjugation to Create Artificial Antigen Presenting Cells

1. Prepare 2-(N-Morpholino)ethanesulfonic acid (MES) buffer. Make a 0.1 M solution of MES in water and adjust the pH to 6.0 by titration with 1M sodium hydroxide (NaOH).
2. Resuspend lyophilized PLGA/PBAE micro/nanoparticles at 20 μg/mL in MES buffer by vortexing. Fill a polypropylene microcentrifuge tube with 900 μL of MES buffer and add 100 μL of the particle solution to the tube.
3. Prepare EDC/NHS solution. Dissolve 40 mg 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC) and 48 mg N-hydroxysulfoxuccinimide (NHS) in 1 mL MES buffer.
4. Add 100 μL EDC/NHS solution to the particles and vortex to mix.
5. Incubate the tube on an inverter at room temperature for 30 minutes.
6. Spin down microparticles at 5,000 x g for 5 minutes, or nanoparticles at 17,000 x g for 5 minutes. Discard the supernatant and resuspend in 1 mL PBS by vortexing (microparticles) or sonicating at 2-3 W for 5 seconds (nanoparticles).
7. For microparticles, add 8 μg of the desired signal 1 protein, and 10 μg anti-mouse CD28 (clone 37.51) to the particles. For nanoparticles, add 16 μg signal 1 and 20 μg anti-mouse CD28. Add PBS to bring the volume in the tube to 1.1 mL.
8. Incubate the tube on an inverter at 4 °C overnight.
9. The next day, wash the particles. Spin down microparticles at 5,000 x g for 5 minutes, or nanoparticles at 17,000 x g for 5 minutes. Discard the supernatant, and resuspend particles in 1 mL of sterile PBS by vortexing (microparticles) or sonication at 2-3 W for 5 seconds (nanoparticles). Repeat twice.
10. Resuspend the particles at the desired concentration in culture medium for immediate use. For long-term storage, resuspend particles at 10 mg/mL in a 100 mM sucrose solution. Freeze, lyophilize, and store the particles at -80 °C.

4. Characterization and Evaluation of aAPC

1. Characterization of aAPC size and shape (Figure 3)
   1. Characterize microparticle size and shape by imaging particles using scanning electron microscopy (SEM). For SEM imaging, spread lyophilized particles onto carbon tape adhered to an aluminum tack and sputter coat with gold-palladium.
   2. Analyze size and aspect ratio of particles using image analysis software.
   3. To determine particle size, set scale using scale bar and measure particle diameter. Repeat for approximately 100 particles to determine the average particle diameter and generate a histogram of particle sizes.
   4. To determine aspect ratio, measure the distance across the long axis and the short axis of particles and divide long axis by short axis. Repeat for approximately 50 particles of each shape to determine the average particle aspect ratio for each shape and generate histograms.
   5. Characterize nanoparticle size and shape by imaging particles using transmission electron microscopy (TEM). Analyze size and aspect ratio of nanoparticles using image analysis software as described in 5.1.2. Alternatively, measure spherical nanoparticle size using dynamic light scattering (DLS) or nanoparticle tracking analysis (NTA).
2. Protein Conjugation Efficiency
   1. Prepare aAPC according to Methods 1-3, but in Step 3.7 use fluorescently labeled signal 1 protein and anti-mouse CD28. After conjugation and washing, resuspend the aAPC in 1 mL PBS for a final concentration of 2 mg/mL aAPC.
   2. Prepare protein standards in a black polystyrene 96-well microplate. Add 5 μg of fluorescently labeled signal 1 protein to PBS in the first well of the plate and make 10 1:2 dilutions in PBS across the row of the plate. Leave the last well blank. Repeat this step to generate another set of standards with fluorescently labeled anti-CD28.
   3. Pipette 100 μL of the aAPC solution into replicate wells of the black polystyrene microplate in triplicate.
   4. Read the fluorescence on a fluorescence plate reader at the appropriate wavelengths. Use the fluorescence readings from the protein standards to generate standard curves for each fluorescent antibody. Using the standard curve, calculate the concentrations of signal 1 and anti-CD28 in each sample well, and then calculate the amount of surface protein and conjugation efficiency (Figure 4A, Figure 5A).
3. Evaluation of aAPC for in vitro stimulation of CD8+ T cells
   1. Prepare B’ media (RPMI medium supplemented with L glutamine, 10% FBS, 1% Non-essential amino acid solution, 1% Sodium pyruvate, 1% MEM Vitamin solution, 92 μM β-mercaptoethanol, 10 ng/mL ciprofloxacin, and 30 U/mL IL-2.
   2. Sacrifice a Black 6 mouse via carbon dioxide exposure.
   3. Harvest the spleen from the mouse according to a previously established protocol¹⁶. Collect the spleen in a 50 mL conical tube with 10- 15 mL PBS. Using a pestle, mash the spleen through a 70 µm cell strainer into a 50 mL conical tube. During mashing, wash the strainer with 40 mL PBS.
   4. Spin the splenocytes at 300 x g for 5 minutes. Pour off the supernatant and resuspend the splenocytes in 4 mL of Ack Lysing Buffer to lyse the red blood cells. Allow the tube to sit undisturbed for 1 minute, then add PBS to bring the volume in the tube to 20 mL.
   5. Spin the cells at 300 x g for 5 minutes. Pour off the supernatant and resuspend the cells in 1 mL of PBS. Count the cells using a hemocytometer.
   6. Spin the cells at 300 x g for 5 minutes and resuspend in the desired volume of cell separation buffer. Isolate CD8+ T cells from the single cell suspension using a CD8+ negative selection T cell isolation kit, following the manufacturer’s protocol.
   7. Following magnetic separation, spin CD8+ T cells at 300 x g for five minutes and remove the cell separation buffer. Resuspend cells in 1 mL of PBS and count the cells. Label cells with carboxyfluorescein succinyl ester (CFSE) according to the manufacturer’s protocol.
   8. Incubate 8,333 CD8+ T cells and 0.0833 mg (or desired dose) of aAPC in 150 μL B’ media in each well of a 96 well U-bottom tissue culture-treated plate.
   9. Incubate at 37 °C for 7 days. After 3-4 days, refresh the culture medium by adding 75 μL fresh medium to each well.
   10. After 3 days of incubation, analyze CFSE labelled cells on a flow cytometer to assess proliferation. Each peak on the flow cytometry CFSE histogram represents a generation of cells due to the CFSE dilution with each successive cell division.
   11. After 7 days, use a hemocytometer to count the number of cells in each well. Prior to counting, stain dead cells with a Trypan Blue solution. Exclude dead cells from final cell counts. Normalize the final cell concentration to the initial concentration to calculate the fold-expansion (Figure 4 and Figure 5).

Results

A schematic for the automated 2D thin film stretching device is given in Figure 1. A schematic and description for a 1D thin film stretching device is given in Ho et al.¹⁷ The stretcher is constructed from aluminum parts using standard milling and machining techniques. Similar to the 1D stretcher, the 2D stretcher consists of metallic grips and guide rails. Bidirectional lead screws are used to translate linear to rotational motion. Th...

Discussion

This protocol details a versatile method for the precise generation of anisotropic polymeric particles. The thin film stretching technique described here is scalable, highly reproducible and inexpensive. Alternative techniques for generating anisotropic particles suffer from many limitations, including high cost, low throughput, and limited particle size. The thin film stretching approach is also advantageous because the particles are modified to be anisotropic after synthesis, and, as a result, is compatible with a wide...

Materials

Name	Company	Catalog Number	Comments
Poly(vinyl alcohol), MW 25000, 88% hydrolyzed	Polysciences, Inc.	02975-500
Glycerol	Sigma-Aldrich	G9012
Digital Thermometer	Fluke	N/A	Model name: Fluke 52 II
Immersion Temperature Probe	Fluke	N/A	Model name: Fluke 80PK 22
Digital Hotplate & Stirrer	Benchmark Scientific	H3760-HS
Multipoint stirrer	Thermo Fisher Scientific	50093538
Resomer RG 504 H, Poly(D,L-lactide-co-glycolide)	Sigma-Aldrich	719900
Dichloromethane	Sigma-Aldrich	D65100
Homogenizer	IKA	0003725001
Sonicator	Sonics & Materials, Inc.	N/A	Model number: VC 505
Sonicator sound abating enclosure	Sonics & Materials, Inc.	N/A	Part number: 630-0427
Sonicator probe	Sonics & Materials, Inc.	N/A	Part number: 630-0220
Sonicator microtip	Sonics & Materials, Inc.	N/A	Part number: 630-0423
High speed centrifuge	Beckman Coulter	N/A	Model number: J-20XP (discontinued), alternative model: J-26XP
High speed centrifuge rotor	Beckman Coulter	369691	Model number: JA-17
High speed polycarbonate centrifuge tubes	Thermo Fisher Scientific	3118-0050	50 mL, screw cap
Rectangular disposable petri dish	VWR International	25384-322	75 x 50 x 10 mm
Square disposable petri dish	VWR International	10799-140	100 mm x 100 mm
LEAF Purified anti-mouse CD3ε Antibody	Biolegend	100314
InVivoMab anti-mouse CD28, clone 37.51	Bio X Cell	BE0015-1
N-(3-Dimethylaminopropyl)-N′-ethylcarbodiimide hydrochloride	Sigma-Aldrich	E6383
N-Hydroxysulfosuccinimide sodium salt	Sigma-Aldrich	56485
MES	Sigma-Aldrich	M3671
Alexa Fluor 488 anti-mouse CD3 Antibody	Biolegend	100212
APC anti-mouse CD28 Antibody	Biolegend	102109
Corning 96 Well Solid Polystyrene Microplate	Sigma-Aldrich	CLS3915	flat bottom, black polystyrene
Protein LoBind Tubes, 1.5 mL	Eppendorf	22431081
RPMI 1640 Medium (+ L-Glutamine)	ThermoFisher Scientific	11875093
Fetal Bovine Serum	Sigma-Aldrich	F4135	Heat Inactivated, sterile-filtered
Ciprofloxacin	Sigma-Aldrich	17850
2-Mercaptoethanol	Sigma-Aldrich	M6250
Recombinant Human IL-2 (carrier-free)	Biolegend	589102
Sodium Pyruvate (100 mM)	ThermoFisher Scientific	11360070
MEM Non-Essential Amino Acids Solution (100X)	ThermoFisher Scientific	11140050
MEM Vitamin Solution (100X)	ThermoFisher Scientific	11120052
CD8a+ T Cell Isolation Kit, mouse	Miltenyi Biotech	130-104-075
CellTrace CFSE Cell Proliferation Kit	ThermoFisher Scientific	C34554
LS Columns	Miltenyi Biotech	130-042-401
MidiMACS Separator	Miltenyi Biotech	130-042-302
MACS Multistand	Miltenyi Biotech	130-042-303
Flow Cytometer	Accuri C6
Synergy 2 Multi-Detection Microplate Reader	BioTek
autoMACS Running Buffer	Miltenyi BIotech	130-091-221
Cell Strainer	ThermoFisher Scientific	22363548	Sterile, 70 µm nylon mesh
ACK Lysing Buffer	ThermoFisher Scientific	A1049201
C57BL/6J (Black 6) Mouse	The Jackson Laboratory	000664	Male, at least 7 weeks old
U-Bottom Tissue Culture Plates	VWR	353227	Sterile, 96-well tissue culture treated polystyrene plates
40 V DC Power Supply	Probotix	LPSK-4010
PTFE Coated Wire	Mouser	602-5858-100-01	This is for a 100 ft. spool but an equivalent wire will work
Stepper Motor Driver	Probotix	MondoStep5.6
IDC Connector Kit	Probotix	IDCM-10-12
Microcontroller	Probotix	PBX-RF
4A Fuses	Radio Shack	2701026	Equivalent fuses will work as well
DB25 Male to Male Cable	Probotix	DB25-6
USB-A to USB-B Cable	Staples	2094915	Equivalent cable will work as well
8-Pin Amphenol Connectors Male and Female	Mouser	654-97-3100A-20-7P and 654-97-3106A20-7S
Stepper Motor	Probotix	HT23-420-8
Right Hand Lead Screw	Roton	60722
Left Hand Lead Screw	Roton	60723
Screws	McMaster Carr	92196A151
Neoprene Rubber	McMaster Carr	8698K51
Right Handed Flanged Lead Nut	Roton	91962
Left Handed Flanged Lead Nut	Roton	91963
Linux Control Computer	Probotix	LCNC-PC	Any computer with matching specification and Linux operating system will work
Corning bottle-top vacuum filter system	Sigma-Aldrich	CLS431097
Trypan Blue Solution, 0.4 %	ThermoFisher Scientific	15250061