Forest Rohwer

Use of 16S ribosomal DNA for delineation of marine bacterioplankton species.

The Phage Proteomic Tree: a genome-based taxonomy for phage.

Genomic analysis of uncultured marine viral communities.

Marine phage genomics.

IL-2 activation of a PI3K-dependent STAT3 serine phosphorylation pathway in primary human T cells.

Global phage diversity.

Metagenomic analyses of an uncultured viral community from human feces.

Genome sequences of two closely related Vibrio parahaemolyticus phages, VP16T and VP16C.

Multispecies microbial mutualisms on coral reefs: the host as a habitat.

Phage community dynamics in hot springs.

Diversity and population structure of a near-shore marine-sediment viral community.

Global distribution of nearly identical phage-encoded DNA sequences.

Transfer of photosynthesis genes to and from Prochlorococcus viruses.

Movement of viruses between biomes.

Widespread association of a Rickettsiales-like bacterium with reef-building corals.

Microbial communities associated with skeletal tumors on Porites compressa.

2004 ASM Conference on the New Phage Biology: the 'Phage Summit'.

PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information.

Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations.

A glimpse into the expanded genome content of Vibrio cholerae through identification of genes present in environmental strains.

Viral metagenomics.

Complete genome sequence of phiHSIC, a pseudotemperate marine phage of Listonella pelagia.

Here a virus, there a virus, everywhere the same virus?

Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing.

RNA viral community in human feces: prevalence of plant pathogenic viruses.

FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries.

An application of statistics to comparative metagenomics.

Using pyrosequencing to shed light on deep mine microbial ecology.

Indirect effects of algae on coral: algae-mediated, microbe-induced coral mortality.

Widespread occurrence of phage-encoded exotoxin genes in terrestrial and aquatic environments in Southern California.

Finding novel genes in bacterial communities isolated from the environment.

Rapid estimation of microbial numbers in water using bulk fluorescence.

The marine viromes of four oceanic regions.

Real-time microbial ecology.

Phage metagenomics.

Power law rank-abundance models for marine phage communities.

Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals.

Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil.

Metagenomic analysis of the microbial community associated with the coral Porites astreoides.

A bacterial metapopulation adapts locally to phage predation despite global dispersal.

Phylogenetic classification of short environmental DNA fragments.

Baselines and degradation of coral reefs in the Northern Line Islands.

Microbial ecology of four coral atolls in the Northern Line Islands.

Biodiversity and biogeography of phages in modern stromatolites and thrombolites.

Functional metagenomic profiling of nine biomes.

The airborne metagenome in an indoor urban environment.

Viral communities associated with healthy and bleaching corals.

Viral diversity and dynamics in an infant gut.

Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico.

Dissecting microbial employment.

Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression.

Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa.

Laboratory procedures to generate viral metagenomes.

Metagenomic signatures of 86 microbial and viral metagenomes.

Metagenomic analysis of stressed coral holobionts.

Viruses manipulate the marine environment.

Genomic analysis of multiple Roseophage SIO1 strains.

Photosystem I gene cassettes are present in marine virus genomes.

Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals.

Explaining microbial population genomics through phage predation.

Roles of viruses in the environment.

Metagenomic islands of hyperhalophiles: the case of Salinibacter ruber.

Hyperspectral and physiological analyses of coral-algal interactions.

The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes.

Viral and microbial community dynamics in four aquatic environments.

Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge.

The lagoon at Caroline/Millennium atoll, Republic of Kiribati: natural history of a nearly pristine ecosystem.

Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity.

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets.

Viruses in the faecal microbiota of monozygotic twins and their mothers.

Reconstructing a puzzle: existence of cyanophages containing both photosystem-I and photosystem-II gene suites inferred from oceanic metagenomic datasets.

Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral Montastraea annularis.

Comparative metagenomics of microbial traits within oceanic viral communities.

Broad surveys of DNA viral diversity obtained through viral metagenomics of mosquitoes.

Spatial distribution of microbial communities in the cystic fibrosis lung.

Black reefs: iron-induced phase shifts on coral reefs.

Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung.

Microbial to reef scale interactions between the reef-building coral Montastraea annularis and benthic algae.

Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity.

Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome.

New abundant microbial groups in aquatic hypersaline environments.

Grinder: a versatile amplicon and shotgun sequence simulator.

Metagenomics and future perspectives in virus discovery.

Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs.

The Microbial Olympics.

Going viral: next-generation sequencing applied to phage populations in the human gut.

Unseen players shape benthic competition on coral reefs.

Metagenomics and metatranscriptomics: Windows on CF-associated viral and microbial communities.

Assessing coral reefs on a Pacific-wide scale using the microbialization score.

Oxygen minimum zones harbour novel viral communities with low diversity.

Cystic fibrosis therapy: a community ecology perspective.

Mucus distribution model in a lung with cystic fibrosis.

Environmental distribution of coral-associated relatives of apicomplexan parasites.

Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages.

Structure and function of a cyanophage-encoded peptide deformylase.

Viral information.

Identification of a novel human papillomavirus by metagenomic analysis of samples from patients with febrile respiratory illness.

Bacteriophage adhering to mucus provide a non-host-derived immunity.

Mechanistic model of Rothia mucilaginosa adaptation toward persistence in the CF lung, based on a genome reconstructed from metagenomic data.

Visualization of oxygen distribution patterns caused by coral and algae.

Influence of coral and algal exudates on microbially mediated reef metabolism.

Innate and acquired bacteriophage-mediated immunity.

Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut.

Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10.

Breath gas metabolites and bacterial metagenomes from cystic fibrosis airways indicate active pH neutral 2,3-butanedione fermentation.

Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis.

Biogeochemical forces shape the composition and physiology of polymicrobial communities in the cystic fibrosis lung.

Evolution of TNF-induced apoptosis reveals 550 My of functional conservation.

Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors.

Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition.

The origins of ambient biological sound from coral reef ecosystems in the Line Islands archipelago.

Species-specific viromes in the ancestral holobiont hydra.

Stochastic Tracking of Infection in a CF Lung.

A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation.

Diversity of viral photosystem-I psaA genes.

A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation.

Mass spectral similarity for untargeted metabolomics data analysis of complex mixtures.

Metabolic cascades in marine microbial communities.

Closing the gaps on the viral photosystem-I psaDCAB gene organization.

Gut DNA viromes of Malawian twins discordant for severe acute malnutrition.

Some of the most interesting CASP11 targets through the eyes of their authors.

Subdiffusive motion of bacteriophage in mucosal surfaces increases the frequency of bacterial encounters.

Stable and sporadic symbiotic communities of coral and algal holobionts.

Can we measure beauty? Computational evaluation of coral reef aesthetics.

Microbial, host and xenobiotic diversity in the cystic fibrosis sputum metabolome.

In retrospect: A century of phage lessons.

Metagenomic and satellite analyses of red snow in the Russian Arctic.

Re-evaluating the health of coral reef communities: baselines and evidence for human impacts across the central Pacific.

Energetic differences between bacterioplankton trophic groups and coral reef resistance.

Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence.

Phage on tap-a quick and efficient protocol for the preparation of bacteriophage laboratory stocks.

Global microbialization of coral reefs.

Using viromes to predict novel immune proteins in non-model organisms.

Metabolomics of pulmonary exacerbations reveals the personalized nature of cystic fibrosis disease.

Viruses as Winners in the Game of Life.

Viruses and the origin of microbiome selection and immunity.

Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics.

Spatial Molecular Architecture of the Microbial Community of a Peltigera Lichen.

Variability and host density independence in inductions-based estimates of environmental lysogeny.

Ecological networking of cystic fibrosis lung infections.

Microbial bioenergetics of coral-algal interactions.

Piggyback-the-Winner in host-associated microbial communities.

A myovirus encoding both photosystem I and II proteins enhances cyclic electron flow in infected Prochlorococcus cells.

Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter baumannii Infection.

Knowles &Rohwer reply.

Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung.

Meta-mass shift chemical profiling of metabolomes from coral reefs.

Bacteriophage Transcytosis Provides a Mechanism To Cross Epithelial Cell Layers.

A New Lineage of Eukaryotes Illuminates Early Mitochondrial Genome Reduction.

Correction for Nguyen et al., "Bacteriophage Transcytosis Provides a Mechanism To Cross Epithelial Cell Layers".

Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism.

The birth of viromics: an interview with Forest Rohwer.

Gradients in Primary Production Predict Trophic Strategies of Mixotrophic Corals across Spatial Scales.

A diversity-generating retroelement encoded by a globally ubiquitous Bacteroides phage.

Erratum for Schooley et al., "Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter baumannii Infection".

Diel population and functional synchrony of microbial communities on coral reefs.

Cystic Fibrosis Rapid Response: Translating Multi-omics Data into Clinically Relevant Information.

Molecular and Microbial Microenvironments in Chronically Diseased Lungs Associated with Cystic Fibrosis.

Impact of bacteria motility in the encounter rates with bacteriophage in mucus.

Biophysical and physiological processes causing oxygen loss from coral reefs.

Dietary prophage inducers and antimicrobials: toward landscaping the human gut microbiome.

Genomic and ecological attributes of marine bacteriophages encoding bacterial virulence genes.

Gp4 is a nuclease required for morphogenesis of T4-like bacteriophages.

Decoding diversity in a coral reef fish species complex with restricted range using metagenomic sequencing of gut contents.

A multiomic analysis of in situ coral-turf algal interactions.

Virulence as a Side Effect of Interspecies Interaction in Coral Pathogens.

A Distinct Contractile Injection System Gene Cluster Found in a Majority of Healthy Adult Human Microbiomes.

Handwashing and Detergent Treatment Greatly Reduce SARS-CoV-2 Viral Load on Halloween Candy Handled by COVID-19 Patients.

The landscape of lysogeny across microbial community density, diversity and energetics.

Space-filling and benthic competition on coral reefs.

Multi-Omics Study of Keystone Species in a Cystic Fibrosis Microbiome.

Presence of SARS-CoV-2 RNA on Surfaces of Public Places and a Transportation System Located in a Densely Populated Urban Area in South America.

Distribution of soil viruses across China and their potential role in phosphorous metabolism.

Nocturnal dissolved organic matter release by turf algae and its role in the microbialization of reefs.

More Stages Decrease Dissipation in Irreversible Step Processes.

Viral predation pressure on coral reefs.

Compounding Phages for Therapeutic Applications.