Department of Bioinformatics,
Biocenter,
Department of Bioinformatics, Biocenter
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Follow-up of five patients with FHHNC due to mutations in the Paracellin-1 gene.
Pediatric nephrology (Berlin, Germany) Aug, 2002 | Pubmed ID: 12185465
A gene mutated in nephronophthisis and retinitis pigmentosa encodes a novel protein, nephroretinin, conserved in evolution.
American journal of human genetics Nov, 2002 | Pubmed ID: 12205563
Pulmonary re-occurrence of post-transplant lymphoproliferative disease with hypogammaglobulinaemia.
European journal of pediatrics Mar, 2003 | Pubmed ID: 12655423
A gene locus for steroid-resistant nephrotic syndrome with deafness maps to chromosome 14q24.2.
Journal of the American Society of Nephrology : JASN Jun, 2003 | Pubmed ID: 12761252
Mutations in a novel gene, NPHP3, cause adolescent nephronophthisis, tapeto-retinal degeneration and hepatic fibrosis.
Nature genetics Aug, 2003 | Pubmed ID: 12872122
Mutations in INVS encoding inversin cause nephronophthisis type 2, linking renal cystic disease to the function of primary cilia and left-right axis determination.
Nature genetics Aug, 2003 | Pubmed ID: 12872123
Refinement of the critical region for MCKD1 by detection of transcontinental haplotype sharing.
Kidney international Sep, 2003 | Pubmed ID: 12911527
Mutations of the Uromodulin gene in MCKD type 2 patients cluster in exon 4, which encodes three EGF-like domains.
Kidney international Nov, 2003 | Pubmed ID: 14531790
Phylogeny of Firmicutes with special reference to Mycoplasma (Mollicutes) as inferred from phosphoglycerate kinase amino acid sequence data.
International journal of systematic and evolutionary microbiology May, 2004 | Pubmed ID: 15143038
Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta).
BMC evolutionary biology Jun, 2004 | Pubmed ID: 15222898
Telomeric refinement of the MCKD1 locus on chromosome 1q21.
Kidney international Aug, 2004 | Pubmed ID: 15253709
Remote computing environment compensating for brain shift.
Computer aided surgery : official journal of the International Society for Computer Aided Surgery , 2003 | Pubmed ID: 15360098
Medullary cystic kidney disease type 1 in a large Native-American kindred.
American journal of kidney diseases : the official journal of the National Kidney Foundation Oct, 2004 | Pubmed ID: 15384011
Expression and phenotype analysis of the nephrocystin-1 and nephrocystin-4 homologs in Caenorhabditis elegans.
Journal of the American Society of Nephrology : JASN Mar, 2005 | Pubmed ID: 15659564
ProfDist: a tool for the construction of large phylogenetic trees based on profile distances.
Bioinformatics (Oxford, England) May, 2005 | Pubmed ID: 15677706
Mapping a new suggestive gene locus for autosomal dominant nephrolithiasis to chromosome 9q33.2-q34.2 by total genome search for linkage.
Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association May, 2005 | Pubmed ID: 15741201
A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota.
RNA (New York, N.Y.) Apr, 2005 | Pubmed ID: 15769870
ITS-2 and 18S rRNA gene phylogeny of Aplysinidae (Verongida, Demospongiae).
Journal of molecular evolution Mar, 2005 | Pubmed ID: 15871043
CBCAnalyzer: inferring phylogenies based on compensatory base changes in RNA secondary structures.
In silico biology , 2005 | Pubmed ID: 15996120
Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures.
RNA (New York, N.Y.) Nov, 2005 | Pubmed ID: 16244129
Ewald sphere correction for single-particle electron microscopy.
Ultramicroscopy Mar, 2006 | Pubmed ID: 16384646
Medullary cystic kidney disease type 1: mutational analysis in 37 genes based on haplotype sharing.
Human genetics Jul, 2006 | Pubmed ID: 16738948
The internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analyses.
Nucleic acids research Jul, 2006 | Pubmed ID: 16845103
A java applet for exploring the new higher level classification of eukaryotes with emphasis on the taxonomy of protists.
The Journal of eukaryotic microbiology Sep-Oct, 2006 | Pubmed ID: 16968448
4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing.
BMC bioinformatics , 2006 | Pubmed ID: 17101042
The ciliary gene RPGRIP1L is mutated in cerebello-oculo-renal syndrome (Joubert syndrome type B) and Meckel syndrome.
Nature genetics Jul, 2007 | Pubmed ID: 17558409
Distinguishing species.
RNA (New York, N.Y.) Sep, 2007 | Pubmed ID: 17652131
Deep metazoan phylogeny.
In silico biology , 2007 | Pubmed ID: 17688440
Calcitonin gene-related peptide: a marker for putative primary afferent neurons in the pig small intestinal myenteric plexus?
Anatomical record (Hoboken, N.J. : 2007) Oct, 2007 | Pubmed ID: 17763367
Evidence of oligogenic inheritance in nephronophthisis.
Journal of the American Society of Nephrology : JASN Oct, 2007 | Pubmed ID: 17855640
The ITS2 Database II: homology modelling RNA structure for molecular systematics.
Nucleic acids research Jan, 2008 | Pubmed ID: 17933769
A new method for spherical object detection and its application to computer aided detection of pulmonary nodules in CT images.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2007 | Pubmed ID: 18051137
Mutation analysis in nephronophthisis using a combined approach of homozygosity mapping, CEL I endonuclease cleavage, and direct sequencing.
Human mutation Mar, 2008 | Pubmed ID: 18076122
Subpicosecond midinfrared spectroscopy of the Pfr reaction of phytochrome Agp1 from Agrobacterium tumefaciens.
Biophysical journal Apr, 2008 | Pubmed ID: 18192363
Computer-aided detection of pulmonary embolism: influence on radiologists' detection performance with respect to vessel segments.
European radiology Jul, 2008 | Pubmed ID: 18292998
Sub-picosecond time resolved infrared spectroscopy of high-spin state formation in Fe(ii) spin crossover complexes.
Physical chemistry chemical physics : PCCP Aug, 2008 | Pubmed ID: 18633547
ITS2 data corroborate a monophyletic chlorophycean DO-group (Sphaeropleales).
BMC evolutionary biology , 2008 | Pubmed ID: 18655698
ProfDistS: (profile-) distance based phylogeny on sequence--structure alignments.
Bioinformatics (Oxford, England) Oct, 2008 | Pubmed ID: 18723521
Ultrafast infrared spectroscopy of riboflavin: dynamics, electronic structure, and vibrational mode analysis.
The journal of physical chemistry. B Oct, 2008 | Pubmed ID: 18821792
Mutation analysis of the Uromodulin gene in 96 individuals with urinary tract anomalies (CAKUT).
Pediatric nephrology (Berlin, Germany) Jan, 2009 | Pubmed ID: 18846391
Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE.
BMC research notes , 2008 | Pubmed ID: 18854023
5.8S-28S rRNA interaction and HMM-based ITS2 annotation.
Gene Feb, 2009 | Pubmed ID: 19026726
A systematic approach to mapping recessive disease genes in individuals from outbred populations.
PLoS genetics Jan, 2009 | Pubmed ID: 19165332
A probabilistic model of cell size reduction in Pseudo-nitzschia delicatissima (Bacillariophyta).
Journal of theoretical biology May, 2009 | Pubmed ID: 19232359
Ultrafast protein conformational alterations in bacteriorhodopsin and its locked analogue BR5.12.
The journal of physical chemistry. B Jun, 2009 | Pubmed ID: 19422251
ITS2 sequence-structure analysis in phylogenetics: a how-to manual for molecular systematics.
Molecular phylogenetics and evolution Aug, 2009 | Pubmed ID: 19489124
Evolutionary diversification indicated by compensatory base changes in ITS2 secondary structures in a complex fungal species, Rhizoctonia solani.
Journal of molecular evolution Aug, 2009 | Pubmed ID: 19609478
Compensatory base changes illuminate morphologically difficult taxonomy.
Molecular phylogenetics and evolution Feb, 2010 | Pubmed ID: 19660561
Methanogenic archaeal community in the sediment of an artificially partitioned acidic bog lake.
FEMS microbiology ecology Oct, 2002 | Pubmed ID: 19709271
Primary photoinduced protein response in bacteriorhodopsin and sensory rhodopsin II.
Journal of the American Chemical Society Oct, 2009 | Pubmed ID: 19778046
The ITS2 Database III--sequences and structures for phylogeny.
Nucleic acids research Jan, 2010 | Pubmed ID: 19920122
Microevolution and speciation in Thalassiosira weissflogii (Bacillariophyta).
Protist Apr, 2010 | Pubmed ID: 20018562
Structure of clathrin coat with bound Hsc70 and auxilin: mechanism of Hsc70-facilitated disassembly.
The EMBO journal Feb, 2010 | Pubmed ID: 20033059
ITS2 secondary structure improves phylogeny estimation in a radiation of blue butterflies of the subgenus Agrodiaetus (Lepidoptera: Lycaenidae: Polyommatus ).
BMC evolutionary biology , 2009 | Pubmed ID: 20035628
Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees.
Biology direct , 2010 | Pubmed ID: 20078867
Uromodulin is expressed in renal primary cilia and UMOD mutations result in decreased ciliary uromodulin expression.
Human molecular genetics May, 2010 | Pubmed ID: 20172860
Individuals with mutations in XPNPEP3, which encodes a mitochondrial protein, develop a nephronophthisis-like nephropathy.
The Journal of clinical investigation Mar, 2010 | Pubmed ID: 20179356
Subunit interactions in bovine papillomavirus.
Proceedings of the National Academy of Sciences of the United States of America Apr, 2010 | Pubmed ID: 20308582
A two-level approach towards semantic colon segmentation: removing extra-colonic findings.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2009 | Pubmed ID: 20426210
Nephronophthisis.
Pediatric nephrology (Berlin, Germany) Feb, 2011 | Pubmed ID: 20652329
Mutation analysis of 18 nephronophthisis associated ciliopathy disease genes using a DNA pooling and next generation sequencing strategy.
Journal of medical genetics Feb, 2011 | Pubmed ID: 21068128
A molecular phylogeny of Hypnales (Bryophyta) inferred from ITS2 sequence-structure data.
BMC research notes , 2010 | Pubmed ID: 21108782
Excited-state dynamics of protochlorophyllide revealed by subpicosecond infrared spectroscopy.
Biophysical journal Jan, 2011 | Pubmed ID: 21190679
Evolutionary distances in the twilight zone--a rational kernel approach.
PloS one , 2010 | Pubmed ID: 21209825
Internal transcribed spacer 2 (nu ITS2 rRNA) sequence-structure phylogenetics: towards an automated reconstruction of the green algal tree of life.
PloS one , 2011 | Pubmed ID: 21347329
Modelling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species.
Molecular ecology resources Jan, 2009 | Pubmed ID: 21564570
Vibrational mode analysis of isotope-labeled electronically excited riboflavin.
The journal of physical chemistry. B Jun, 2011 | Pubmed ID: 21598977
Autosomal dominant mutation in the signal peptide of renin in a kindred with anemia, hyperuricemia, and CKD.
American journal of kidney diseases : the official journal of the National Kidney Foundation Nov, 2011 | Pubmed ID: 21903317
Computer-aided detection of colorectal polyps in CT colonography with and without fecal tagging: a stand-alone evaluation.
Investigative radiology Feb, 2012 | Pubmed ID: 21934519
Robust large scale prone-supine polyp matching using local features: a metric learning approach.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2011 | Pubmed ID: 22003686
Phylogeny of Oedogoniales, Chaetophorales and Chaetopeltidales (Chlorophyceae): inferences from sequence-structure analysis of ITS2.
Annals of botany Jan, 2012 | Pubmed ID: 22028463
ITS2 Database IV: Interactive taxon sampling for internal transcribed spacer 2 based phylogenies.
Molecular phylogenetics and evolution Feb, 2012 | Pubmed ID: 22366368
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