Bu çalışma, Amerikan Halk Sağlığı Servisi ödül NS-071.530 tarafından desteklenmiştir.

1. Hücreler hazırlanması <ol><li> % 5 CO2 ile nemlendirilmiş bir atmosferinde% 10 at serumu ve 37 ° C&#39;de kültür muhafaza ile desteklenmiş Dulbecco değiştirilmiş Eagle ortamı (DMEM) içinde hipofiz hücreleri AtT20 büyür. </li><li> Standart bir tripsinizasyon prosedürü kullanılarak hücrelerin 5-7 günde bir alt kültüre tarafından kültürü muhafaza. </li><li> Siyah, açık bir alt katın kuyuları, poli-L-Lizin 50 uL 96-kuyucuklu plaklar. Kuyular inkübatörde 30 dakika kurumasını bekleyin. </li><li> Çukur başına 30,000 hücre yoğunluğunda ve 3-4 gün için inkübatöre hücreleri depolamak 200 uL ortamı içeren 96 kuyucuklu plaklar içinde plakası hücreleri. </li><li> Yavaş yavaş hücre monolayer gelen kültür ortamı aspire bir ucunda bir vakum bağlı kapaklı bir 4 litrelik kavanoz ve diğer ucunda 200 ul pipet oluşan bir aspirasyon kurulum, kullanın. </li><li> Normal tampon çözeltisinin 200 uL (132 mM NaCl, 5 mM KCI, 1 m hücreleri yıkayıpM CaCI2, 1 mM MgCl2, 5 mM dekstroz, 5 mM HEPES, NaOH ile pH 7.4). </li><li> Her oyuğa zar potansiyeli duyarlı boya (MPD) DiBAC 4 (3) ya da HLB 021-152 (5 uM) ihtiva eden tampon çözeltisinin 200 uL ekleyin ve 37 azından 40 dakika süreyle inkübe edilir hücreleri ° C. </li></ol> 2. Test Bileşiklerinin ve Hücre Tedavi hazırlanması <ol><li> Bir Versette (ThermoFisher) otomatikleştirilmiş sıvı taşıma sistemi kullanılarak bir bileşik kütüphanesinden test bileşiklerinin bir seri seyreltme (DMSO içinde stok = 10 mM) (96-kuyucuklu biçiminde) hazırlayın. </li><li> , 96-plaka çıkarın AtT20 hücreleri içeren, inkübatör gelen ve plakası oda sıcaklığına gelmesini bekleyin. Eski tampon kapalı aspire ve hücrelere MPD içeren taze tampon çözümü uygulayın. </li><li> Sıvı işleme sisteminin çeşitli test bileşiklerinin konsantrasyonu (10 nM 10 uM) (2-20 uL) ve kontrol çözeltileri (% 0.1 DMSO) (tampon çözeltisi containi uygulanır kullanılarakhücreler içeren 96 kuyucuklu plak için ng MPD). </li><li> Floresan ölçümü için önceden test bileşikleri ile birlikte 5 dakika süreyle inkübe hücreleri. </li></ol> 3. GIRK Kanallar aktivasyonu, Floresan Ölçüm ve Analiz <ol><li> Bir BIOTEK Synergy2 floresan plaka okuyucu içine 96-plaka takın ve sırasıyla, uyarma ve emisyon dalga boyları 520 ve 560 nm floresan arka sinyal edinin. </li><li> Synergy2 enjektör sistemini kullanarak GIRK kanalları etkinleştirmek için (toplam hacim = 220 uL) kuyulara GPCR ligandlar (somatostatin = 200 nM veya karbakol = 10 uM) ya da kontrol solüsyonu (tampon tek başına) (20 uL) uygulayın. Sırasıyla, uyarma ve emisyon dalga boyları 520 ve 560 nm, 300 s örnekleme dönemi boyunca 10 sn aralıklarla veri puan toplayın. </li><li> Zaman ders ve BIOTEK Gen5 yazılımı kullanarak floresan değişimi tepe genliği elde etmek ve daha fazla analiz için Excel&#39;e veri ihracat. </li&gt; <li> Assay of güvenilirliğini belirlemek için Z&#39;-faktörü hesaplamak. Z&#39;faktör tayini için kullanılan plakalar 2 satır olumlu her (GPCR ligand) ve negatif (tampon yalnız) kontrolleri içeriyordu. Z&#39;-faktörü olarak tanımlanır: Z &#39;= 1 - (p + 3σ 3σ N) / | μ P - μ N | μ P &amp; μ N pozitif kontrol ve negatif kontrol sinyallerinin aracı olup, ve σ P &amp; σ N pozitif kontrol standart sapmalarının ve negatif kontrol sinyalleri, sırasıyla, 6 vardır. 0,5-1,0 aralığında Z&#39;-faktörleri assay of kalitesi 6 mükemmel olduğunu göstermektedir. 0.5 Aşağıda Z&#39;-faktörleri ile Tabaklar analiz dışında tutulmuştur. </li><li> Floresan sinyali modüle Bileşikler içeri düzeltici K + kanal özgüllük onaylamak için Ba 2 varlığı + veya tertiapin-Q yeniden test edilir. </li></ol> 4. Representative Sonuçlar GIRK kanalı deneyi kullanılarak ölçülmüştür floresans sinyalinin bir örnek, Şekil 2&#39;de gösterilmiştir. AtT20 hücrelere GPCR ligand somatostatin (200 nM) ilave HLB 021-152 flüoresan sinyali bir hızla, zamana bağlı azalma (Şekil 2) neden olmuştur. Bunun aksine, kontrol solüsyonu ilave süre ile (Şekil 2) başlangıç ​​dönen bir floresans küçük bir ani yükselme üretilir. Somatostatin kontrolü ve çözümleri enjekte 96-kuyucuklu plaklar içinde tepe floresan değerleri ile karşılaştırılması 0,7-0,5 arasında değişen bir Z&#39;-faktörleri verdi. Daha da nicelendirilmek üzere, kontrol kayıt kayıt somatostatin çıkarıldı ve elde edilen somatostatin duyarlı sinyali (Şekil 2) analiz edildi. Assay hızlı GIRK kanallar modüle ilaçların belirlenmesi için bir yöntem sağlar. Örneğin, ilaç GIRK cha inhibe ettiklerinnel hücrelerinden K + efflux önleyerek floresans GPCR ligand-aracılı azalır azaltacaktır. Bloklar GIRK kanal 7, somatostatin-aracılı flüoresan değişikliğinin bir inhibisyon üretilen Şekil 3, tertiapin-Q, bir toksin sahip hücrelerin tedavisinde de gösterildiği gibi. Propafenon, kalp 8 blok GIRK kanalı, aynı zamanda flüoresan değişimi (Şekil 4) inhibe ettiği bir anti-aritmik ilaç. Assay da GIRK kanalının aktivatörleri belirlenmesi için yararlı olabilir. Çözeltisi (p &lt;0.5) kontrol ile karşılaştırıldığında Ancak, etanol uygulama (100 ve 200 mM), GIRK kanalı 2,3, bir aktivatör flüoresan sinyali önemli bir değişiklik yoktur neden oldu. <img src="/files/ftp_upload/3850/3850fig1.jpg" alt="Şekil 1"/> Şekil 1. GIRK kanal fluoresan antikor testi Deneysel tasarım. AtT20 hücreleri, bir membran ihtiva eden tampon içinde kuluçkalanıre potansiyel duyarlı floresan boya (D). Boya molekülleri hücre içine girmek ve proteinleri (üst panel) bağlanarak üzerine floresan olur. Onun GPCR için (Som) somatostatin Bağlama GIRK kanalı (alt panel) aktivasyon neden G inhibitör protein (G i) uyarır. K hücre dışı + ve daha sonra akış hücreleri çıkmak için daha negatif ve boya molekülleri haline zar potansiyeli neden olur. Sonuç olarak floresan sinyal azaldıkça (alt panel). <img src="/files/ftp_upload/3850/3850fig2.jpg" alt="Şekil 2"/> Somatostatin veya kontrol solüsyonu eklenmesi sırasında AtT20 hücrelerinin zaman içinde ölçülen Şekil 2. Temsilcisi HLB 021-152 floresan sinyal. Floresan yoğunluğu (F / F O) oranı (F O) reklamı önce ölçülen temel sinyal ile somatostatin varlığı (F) (veya kontrol solüsyonu) sinyal bölünmesi ile elde edilmiştirsomatostatin olduğunu belirtmektedir (ya da kontrol solüsyonu). Her nokta ortalama ± SE 5-6 kuyularda elde temsil eder. Somatostatin veya kontrol solüsyonu zaman sıfır (↓) ilave edildi. Kontrol solüsyonu ilave flüoresan sinyal küçük bir geçici bir artışa yol açmıştır. Bu çözelti enjeksiyon neden olduğu bir sıcaklık değişimi ile sonuçlanmıştır. <img src="/files/ftp_upload/3850/3850fig3.jpg" alt="Şekil 3"/> Şekil 3. Tertiapin-S (500 nm) AtT20 hücreleri tedavisi için bağlayıcı ve GIRK kanalı bloke flüoresan sinyali somatostatin-aracılı azalma inhibe eder. Her nokta ortalama ± SE 4-6 kuyularda elde temsil eder. Somatostatin zaman sıfır (↓) ilave edildi. <img src="/files/ftp_upload/3850/3850fig4.jpg" alt="Şekil 4"/> Şekil 4. Propafenon (20 uM) ile AtT20 hücreler arıtılması ayrıca somatostatin-aracılı azalma inhibefloresan sinyal. Her nokta ortalama ± SE 5-6 kuyularda elde temsil eder. Somatostatin zaman sıfır (↓) ilave edildi.

<ol>
	<li>Hibino, H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Inward+rectifying+potassium+channels:+their+structure,+function+and+physiological+roles.">Inward rectifying potassium channels: their structure, function and physiological roles.</a> Physiol. Rev. 90, 291-366 (2010).</li><li>Lusscher, C., Slesinger, P. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Emerging+roles+for+G+protein-gated+inwardly+rectifying+potassium+(GIRK)+channels+in+health+and+disease.">Emerging roles for G protein-gated inwardly rectifying potassium (GIRK) channels in health and disease.</a> Nat. Rev. Neurosci. 11, 301-315 (2010).</li><li>Kobayashi, T., Ikeda, K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=G+protein-activated+inwardly+rectifying+potassium+channels+as+potential+therapeutic+targets.">G protein-activated inwardly rectifying potassium channels as potential therapeutic targets.</a> Cur. Pharm. Des. 12, 4513-4523 (2006).</li><li>Terstappen, G. C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Functional+analysis+of+native+and+recombinant+ion+channels+using+a+high-capacity+nonradioactive+rubidium+efflux+assay.">Functional analysis of native and recombinant ion channels using a high-capacity nonradioactive rubidium efflux assay.</a> Anal. Biochem. 272, 149-155 (1999).</li><li>Cheng, C. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+high-throughput+HERG+potassium+channel+function+assay:+an+old+assay+with+a+new+look.">A high-throughput HERG potassium channel function assay: an old assay with a new look.</a> Drug Dev. Ind. Pharm. 28, 177-191 (2002).</li><li>Zhang, J. -. H., Chung, T. D. Y., Oldenburg, K. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+simple+statistical+parameter+for+use+in+evaluation+and+validation+of+high+throughput+screening+assays.">A simple statistical parameter for use in evaluation and validation of high throughput screening assays.</a> J. Biomol. Screen. 4, 67-73 (1999).</li><li>Jin, W., Lu, Z. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+novel+high-affinity+inhibitor+for+inward-rectifier+K++channels.">A novel high-affinity inhibitor for inward-rectifier K+ channels.</a> Biochem. 37, 13291-13299 (1998).</li><li>Inomata, N. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Anti-arrhythmic+agents+act+differently+on+the+activation+phase+of+the+Ach-response+in+guinea+pig+atrial+myocytes.">Anti-arrhythmic agents act differently on the activation phase of the Ach-response in guinea pig atrial myocytes.</a> Br. J. Pharmacol. 108, 111-116 (1993).</li><li>Tang, W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Development+and+evaluation+of+high+throughput+functional+assay+methods+for+HERG+potassium+channel.">Development and evaluation of high throughput functional assay methods for HERG potassium channel.</a> J. Biomol. Screen. 6, 325-331 (2001).</li><li>Wolff, C., Fuks, B., Chatelain, P. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Comparative+study+of+membrane+potential-sensitive+fluorescent+probes+and+their+use+in+ion+channel+screening+assays.">Comparative study of membrane potential-sensitive fluorescent probes and their use in ion channel screening assays.</a> J. Biomol. Screen. 8, 533-513 (2003).</li><li>Niswender, C. M., Johnson, K. A., Luo, Q., Avala, J. E., Kim, C., Conn, P. J., Weaver, C. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+novel+assay+of+Gi/o-linked+G+protein-coupled+receptor+coupling+to+potassium+channels+provides+new+insights+into+the+pharmacology+of+group+III+metabotropic+glutamate+receptors.">A novel assay of Gi/o-linked G protein-coupled receptor coupling to potassium channels provides new insights into the pharmacology of group III metabotropic glutamate receptors.</a> Mol. Pharm. 73, 1213-1224 (2008).</li><li>Bridal, T. R., Marquilis, M., Wang, X., Donio, M., Sorota, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Comparison+of+human+Ether-&#225;-go-go+related+gene+screening+assays+based+on+IonWorks+Quattro+and+thallium+flux.">Comparison of human Ether-&#225;-go-go related gene screening assays based on IonWorks Quattro and thallium flux.</a> Assay Drug Dev. Technol. 8, 755-765 (2010).</li></ol>

Çıkar çatışması ilan etti.

Membran potansiyeli duyarlı floresan boyalar iyon kanallarını modüle uyuşturucu 9,10 tanımlamak için kullanılmış iken, bu nöronal GIRK kanal ilaç keşfi için uygulama ilk rapordur. Burada sunulan GIRK kanal fluoresan antikor testi ligand kapılı K + kanalları tarama için hızlı, güvenilir ve gerçek zamanlı bir yöntem sağlar. Tahlil, bir eksojen rekombinant GIRK kanalı 11 veya klonal hücre çizgileri (AtT20, PC-12), bir endojen kanalı ifade ifade ölümsüzleştir...

<table border="1"><tbody><tr><td> Reaktif Adı </td><td> Şirket </td><td> Katalog numarası </td></tr><tr><td> DMEM </td><td> CellGro </td><td> 10-013 </td></tr><tr><td> At serumu </td><td> Invitrogen </td><td> 16050-114 </td></tr><tr><td> 96-kuyucuklu plaklar </td><td> Corning </td><td> 3603 </td></tr><tr><td> Poli-L-Lizin </td><td> Sigma-Aldrich </td><td> P4707 </td></tr><tr><td> Somatostatin </td><td> Sigma-Aldrich </td><td> S9129 </td></tr><tr><td> Karbakol </td><td> Sigma-Aldrich </td><td> C4382 </td></tr><tr><td> HLB 021-152 </td><td> AnaSpec </td><td> 89300 </td></tr><tr><td> Versette otomatik sıvı işleyici </td><td> ThermoFisher </td><td> 650-01 </td></tr><tr><td> Synergy2 floresan plaka okuyucu </td><td> BIOTEK </td><td></td></tr><tr><td> Gen5 analizi software </td><td> BIOTEK </td><td></td></tr></tbody></table> Tablo 1. Özel reaktifler ve ekipman Tablo.

a fluorescent screening assay for identifying modulators of girk channels

G-protein bağımlı içeri düzeltici K + (GIRK) kanalları hormonlar ve nörotransmitterler geniş bir yelpazede hücresel mediatörler olarak işlev ve beyin, kalp, iskelet kas ve endokrin doku 1,2 olarak ifade edilir. GIRK kanallar ve plazma zar bağlı, G proteinine kenetlenmiş reseptörlerin (GPCRs) ila (nörotransmiterler, hormonlar, ilaç vs) ligand bağlama sonra aktive olur. Bu bağlanma sonradan bağlanır ve GIRK kanalı aktive protein G (G i ve G o) uyarılması neden olur. Bir kez GIRK kanal K hareketi + dışarı daha olumsuz olma potansiyeli istirahat membran neden hücrenin sağlar açtı. Sonuç olarak, nöronlarda GIRK kanal aktivasyon spontan aksiyon potansiyeli oluşumu azalır ve eksitatör nörotransmitterlerin salınımını inhibe eder. Kalbinde, GIRK kanal aktivasyonu böylece kalp hızını yavaşlatan pacemaker aktivitesi inhibe eder. <pclass = &quot;jove_content&quot;&gt; GIRK kanal tedavisi nöropatik ağrı, ilaç bağımlılığı, kardiyak aritmiler ve diğer bozukluklar 3 için yeni terapötik ajanların geliştirilmesi için yeni hedefleri temsil eder. Bununla birlikte, bu kanalların farmakoloji büyük ölçüde keşfedilmemiş kalır. Anti-aritmik ajanlar, antipsikotik ilaçlar ve antidepresan ilaç içeren bir dizi GIRK kanalı bloke rağmen, bu inhibisyon seçici değildir ve nispeten yüksek bir ilaç konsantrasyonlarını 3 meydana gelir. Burada, GIRK kanalların yeni modülatörleri belirlenmesi için bir reel-zamanlı tarama deneyi açıklanmaktadır. Bu deneyde, GIRK kanallar ifade nöronal AtT20 hücreleri, bu tür bis-(1,3-dibutylbarbituric asit) gibi zar potansiyeli hassas boyaların flüoresan ile yüklenir trimethine oxonol [4 DiBAC (3)] ya da HLB 021-152 (Şekil 1 ). Boya molekülleri hücreleri (Şekil 1) içine kuvvetli flüoresan aşağıdaki uptake hale gelir. TedaviGPCR ligandlar olan hücrelerin açmak için GIRK kanallar uyarır. Hücresinin neden K + efflux dışarı daha negatif haline zar potansiyeli ve azaltmak için flüoresan sinyali (Şekil 1) neden olur. Böylece, GIRK kanalı yoluyla K + efflux modüle ilaçlar bir floresan plak okuyucu kullanarak test edilebilir. Diğer iyon kanal tarama testleri gibi atomik absorpsiyon spektrofotometresi 4 veya radyotracer analizi 5 aksine, GIRK kanal fluoresan antikor testi, hızlı, gerçek zamanlı ve ucuz bir tarama prosedürü sağlar.

Watch this Scientific Journal Video about A Fluorescent Screening Assay for Identifying Modulators of GIRK Channels at JoVE.com

A Fluorescent Screening Assay for Identifying Modulators of GIRK Channels

G-protein bağımlı içe düzeltici K ile etkileşim ilaçların belirlenmesi için gerçek zamanlı tarama yöntemi<sup&gt; +</sup&gt; (GIRK) kanalları açıklanmıştır. Tahlil GIRK kanal aktivitesini ölçmek için membran potansiyeli duyarlı floresan boyalar kullanır. Bu teknik, hücre serileri bir dizi kullanım için uyarlanabilir.

GIRK Kanal Modülatörler belirlenmesi için Floresan Tarama Testi

G protein-gated inward rectifier K+ (GIRK) channels function as cellular mediators of a wide range of hormones and neurotransmitters and are expressed in ...

a-fluorescent-screening-assay-for-identifying-modulators-girk

Research

JoVE Journal

Biology

14.3K Görüntüleme.  University of South Carolina, School of Medicine. G-protein bağımlı içe düzeltici K ile etkileşim ilaçların belirlenmesi için gerçek zamanlı tarama yöntemi + (GIRK) kanalları açıklanmıştır. Tahlil GIRK kanal aktivitesini ölçmek için membran potansiyeli duyarlı floresan boyalar kullanır. Bu teknik, hücre serileri bir dizi kullanım için uyarlanabilir.

Video: A Fluorescent Screening Assay for Identifying Modulators of GIRK Channels

Mutagenesis and Functional Analysis of Ion Channels Heterologously Expressed in Mammalian Cells

We will demonstrate how to study the functional effects of introducing a point mutation in an ion channel. We study G protein-gated inwardly rectifying potassium (referred to as GIRK) channels, which are important for regulating the excitability of neurons. There are four different mammalian GIRK channel subunits (GIRK1-GIRK4) - we focus on GIRK2 because it forms a homotetramer. Stimulation of different types of G protein-coupled receptors (GPCRs), such as the muscarinic receptor (M2R), leads to activation of GIRK channels. Alcohol also directly activates GIRK channels. We will show how to mutate one amino acid by specifically changing one or more nucleotides in the cDNA for the GIRK channel. This mutated cDNA sequence will be amplified in bacteria, purified, and the presence of the point mutation will be confirmed by DNA sequencing. The cDNAs for the mutated and wild-type GIRK channels will be transfected into human embryonic kidney HEK293T cells cultured in vitro. Lastly, whole-cell patch-clamp electrophysiology will be used to study the macroscopic potassium currents through the ectopically expressed wild-type or mutated GIRK channels. In this experiment, we will examine the effect of a L257W mutation in GIRK2 channels on M2R-dependent and alcohol-dependent activation.

We will demonstrate how to study the effect of a single point mutation on the function of an ion channel.

İyon Kanalları ve Fonksiyonel Analiz Mutagenez Heterologously Memeli Hücreleri cinsinden ifade edilir

We will demonstrate how to study the functional effects of introducing a point mutation in an ion channel. We study G protein-gated inwardly rectifying ...

Biyoloji

High-throughput Screening and Biosensing with Fluorescent C. elegans Strains

High-throughput screening (HTS) is a powerful approach for identifying chemical modulators of biological processes. However, many compounds identified in screens using cell culture models are often found to be toxic or pharmacologically inactive in vivo1-2. Screening in whole animal models can help avoid these pitfalls and streamline the path to drug development.
C. elegans is a multicellular model organism well suited for HTS. It is small (&lt;1 mm) and can be economically cultured and dispensed in liquids. C. elegans is also one of the most experimentally tractable animal models permitting rapid and detailed identification of drug mode-of-action3.
We describe a protocol for culturing and dispensing fluorescent strains of C. elegans for high-throughput screening of chemical libraries or detection of environmental contaminants that alter the expression of a specific gene. Large numbers of developmentally synchronized worms are grown in liquid culture, harvested, washed, and suspended at a defined density. Worms are then added to black, flat-bottomed 384-well plates using a peristaltic liquid dispenser. Small molecules from a chemical library or test samples (e.g., water, food, or soil) can be added to wells with worms. In vivo, real-time fluorescence intensity is measured with a fluorescence microplate reader. This method can be adapted to any inducible gene in C. elegans for which a suitable reporter is available. Many inducible stress and developmental transcriptional pathways are well defined in C. elegans and GFP transgenic reporter strains already exist for many of them4. When combined with the appropriate transgenic reporters, our method can be used to screen for pathway modulators or to develop robust biosensor assays for environmental contaminants. 
We demonstrate our C. elegans culture and dispensing protocol with an HTS assay we developed to monitor the C. elegans cap &#x2018;n&#x2019; collar transcription factor SKN-1. SKN-1 and its mammalian homologue Nrf2 activate cytoprotective genes during oxidative and xenobiotic stress5-10. Nrf2 protects mammals from numerous age-related disorders such as cancer, neurodegeneration, and chronic inflammation and has become a major chemotherapeutic target11-13.Our assay is based on a GFP transgenic reporter for the SKN-1 target gene gst-414, which encodes a glutathione-s transferase6. The gst-4 reporter is also a biosensor for xenobiotic and oxidative chemicals that activate SKN-1 and can be used to detect low levels of contaminants such as acrylamide and methyl-mercury15-16.

High-throughput Screening and Biosensing with Fluorescent C. elegans Strains

A procedure for liquid-based culturing and dispensing of C. elegans strains expressing fluorescent reporter proteins is described that does not require expensive sorting equipment. This approach can be applied to numerous inducible C. elegans genes for drug discovery or biosensing of contaminants.

Floresan ile yüksek verim Tarama ve Biyoalgılayıcı C. elegans Suşlarının

High-throughput screening (HTS) is a powerful approach for identifying chemical modulators of biological processes.  However, many compounds identified in ...

Conversion of a Capture ELISA to a Luminex xMAP Assay using a Multiplex Antibody Screening Method

The enzyme-linked immunosorbent assay (ELISA) has long been the primary tool for detection of analytes of interest in biological samples for both life science research and clinical diagnostics. However, ELISA has limitations. It is typically performed in a 96-well microplate, and the wells are coated with capture antibody, requiring a relatively large amount of sample to capture an antigen of interest . The large surface area of the wells and the hydrophobic binding of capture antibody can also lead to non-specific binding and increased background. Additionally, most ELISAs rely upon enzyme-mediated amplification of signal in order to achieve reasonable sensitivity. Such amplification is not always linear and can thus skew results.
In the past 15 years, a new technology has emerged that offers the benefits of the ELISA, but also enables higher throughput, increased flexibility, reduced sample volume, and lower cost, with a similar workflow 1, 2. Luminex xMAP Technology is a microsphere (bead) array platform enabling both monoplex and multiplex assays that can be applied to both protein and nucleic acid applications 3-5. The beads have the capture antibody covalently immobilized on a smaller surface area, requiring less capture antibody and smaller sample volumes, compared to ELISA, and non-specific binding is significantly reduced. Smaller sample volumes are important when working with limiting samples such as cerebrospinal fluid, synovial fluid, etc. 6. Multiplexing the assay further reduces sample volume requirements, enabling multiple results from a single sample.
Recent improvements by Luminex include: the new MAGPIX system, a smaller, less expensive, easier-to-use analyzer; Low-Concentration Magnetic MagPlex Microspheres which eliminate the need for expensive filter plates and come in a working concentration better suited for assay development and low-throughput applications; and the xMAP Antibody Coupling (AbC) Kit, which includes a protocol, reagents, and consumables necessary for coupling beads to the capture antibody of interest. (See Materials section for a detailed list of kit contents.)
In this experiment, we convert a pre-optimized ELISA assay for TNF-alpha cytokine to the xMAP platform and compare the performance of the two methods 7-11. TNF-alpha is a biomarker used in the measurement of inflammatory responses in patients with autoimmune disorders.
We begin by coupling four candidate capture antibodies to four different microsphere sets or regions. When mixed together, these four sets allow for the simultaneous testing of all four candidates with four separate detection antibodies to determine the best antibody pair, saving reagents, sample and time. Two xMAP assays are then constructed with the two most optimal antibody pairs and their performance is compared to that of the original ELISA assay in regards to signal strength, dynamic range, and sensitivity.

An ELISA can be easily converted to a Luminex xMAP assay and, through the benefits of multiplexing, several antibodies can be screened simultaneously to identify an optimum antibody pair, resulting in increased sensitivity and dynamic range, while reducing assay cost.

Bir Multiplex Antikor Tarama Yöntemi kullanılarak bir Luminex xMAP Tahlil için bir Capture ELISA Dönüşüm

The enzyme-linked immunosorbent assay (ELISA) has long been the primary tool for detection of analytes of interest in biological samples for both life ...

High-throughput Screening for Small-molecule Modulators of Inward Rectifier Potassium Channels

Specific members of the inward rectifier potassium (Kir) channel family are postulated drug targets for a variety of disorders, including hypertension, atrial fibrillation, and pain1,2. For the most part, however, progress toward understanding their therapeutic potential or even basic physiological functions has been slowed by the lack of good pharmacological tools. Indeed, the molecular pharmacology of the inward rectifier family has lagged far behind that of the S4 superfamily of voltage-gated potassium (Kv) channels, for which a number of nanomolar-affinity and highly selective peptide toxin modulators have been discovered3. The bee venom toxin tertiapin and its derivatives are potent inhibitors of Kir1.1 and Kir3 channels4,5, but peptides are of limited use therapeutically as well as experimentally due to their antigenic properties and poor bioavailability, metabolic stability and tissue penetrance. The development of potent and selective small-molecule probes with improved pharmacological properties will be a key to fully understanding the physiology and therapeutic potential of Kir channels.
The Molecular Libraries Probes Production Center Network (MLPCN) supported by the National Institutes of Health (NIH) Common Fund has created opportunities for academic scientists to initiate probe discovery campaigns for molecular targets and signaling pathways in need of better pharmacology6. The MLPCN provides researchers access to industry-scale screening centers and medicinal chemistry and informatics support to develop small-molecule probes to elucidate the function of genes and gene networks. The critical step in gaining entry to the MLPCN is the development of a robust target- or pathway-specific assay that is amenable for high-throughput screening (HTS).
Here, we describe how to develop a fluorescence-based thallium (Tl+) flux assay of Kir channel function for high-throughput compound screening7,8,9,10.The assay is based on the permeability of the K+ channel pore to the K+ congener Tl+. A commercially available fluorescent Tl+ reporter dye is used to detect transmembrane flux of Tl+ through the pore. There are at least three commercially available dyes that are suitable for Tl+ flux assays: BTC, FluoZin-2, and FluxOR7,8. This protocol describes assay development using FluoZin-2. Although originally developed and marketed as a zinc indicator, FluoZin-2 exhibits a robust and dose-dependent increase in fluorescence emission upon Tl+ binding. We began working with FluoZin-2 before FluxOR was available7,8 and have continued to do so9,10. However, the steps in assay development are essentially identical for all three dyes, and users should determine which dye is most appropriate for their specific needs. We also discuss the assay's performance benchmarks that must be reached to be considered for entry to the MLPCN. Since Tl+ readily permeates most K+ channels, the assay should be adaptable to most K+ channel targets.

Methods for developing and validating a quantitative fluorescence assay for measuring the activity of inward rectifier potassium (Kir) channels for high-throughput compound screening is presented.

İçte düzeltici Potasyum Kanallarının Küçük moleküllü Modülatörler için Yüksek throughput Eleme

Specific members of the inward rectifier potassium (Kir) channel family are postulated drug targets for a variety of disorders, including hypertension, ...

High-throughput Functional Screening using a Homemade Dual-glow Luciferase Assay

We present a rapid and inexpensive high-throughput screening protocol to identify transcriptional regulators of alpha-synuclein, a gene associated with Parkinson&#39;s disease. 293T cells are transiently transfected with plasmids from an arrayed ORF expression library, together with luciferase reporter plasmids, in a one-gene-per-well microplate format. Firefly luciferase activity is assayed after 48 hr to determine the effects of each library gene upon alpha-synuclein transcription, normalized to expression from an internal control construct (a hCMV promoter directing Renilla luciferase). This protocol is facilitated by a bench-top robot enclosed in a biosafety cabinet, which performs aseptic liquid handling in 96-well format. Our automated transfection protocol is readily adaptable to high-throughput lentiviral library production or other functional screening protocols requiring triple-transfections of large numbers of unique library plasmids in conjunction with a common set of helper plasmids. We also present an inexpensive and validated alternative to commercially-available, dual luciferase reagents which employs PTC124, EDTA, and pyrophosphate to suppress firefly luciferase activity prior to measurement of Renilla luciferase. Using these methods, we screened 7,670 human genes and identified 68 regulators of alpha-synuclein. This protocol is easily modifiable to target other genes of interest.

We present a rapid and inexpensive screening method for identifying transcriptional regulators using high-throughput robotic transfections and a homemade dual-glow luciferase assay. This protocol rapidly generates direct side-by-side functional data for thousands of genes and is easily modifiable to target any gene of interest.

Bir ev yapımı Çift kızdırma Lusıferaz Testi kullanarak yüksek verim Fonksiyonel Taraması

We present a rapid and inexpensive high-throughput screening protocol to identify transcriptional regulators of alpha-synuclein, a gene associated with ...

Green Fluorescent Protein-based Expression Screening of Membrane Proteins in Escherichia coli

The production of recombinant membrane proteins for structural and functional studies remains technically challenging due to low levels of expression and the inherent instability of many membrane proteins once solubilized in detergents. A protocol is described that combines ligation independent cloning of membrane proteins as GFP fusions with expression in Escherichia coli detected by GFP fluorescence. This enables the construction and expression screening of multiple membrane protein/variants to identify candidates suitable for further investment of time and effort. The GFP reporter is used in a primary screen of expression by visualizing GFP fluorescence following SDS polyacrylamide gel electrophoresis (SDS-PAGE). Membrane proteins that show both a high expression level with minimum degradation as indicated by the absence of free GFP, are selected for a secondary screen. These constructs are scaled and a total membrane fraction prepared and solubilized in four different detergents. Following ultracentrifugation to remove detergent-insoluble material, lysates are analyzed by fluorescence detection size exclusion chromatography (FSEC). Monitoring the size exclusion profile by GFP fluorescence provides information about the mono-dispersity and integrity of the membrane proteins in different detergents. Protein: detergent combinations that elute with a symmetrical peak with little or no free GFP and minimum aggregation are candidates for subsequent purification. Using the above methodology, the heterologous expression in E. coli of SED (shape, elongation, division, and sporulation) proteins from 47 different species of bacteria was analyzed. These proteins typically have ten transmembrane domains and are essential for cell division. The results show that the production of the SEDs orthologues in E. coli was highly variable with respect to the expression levels and integrity of the GFP fusion proteins. The experiment identified a subset for further investigation.

Green Fluorescent Protein-based Expression Screening of Membrane Proteins in Escherichia coli

A streamlined approach to screening for the expression of recombinant membrane proteins in Escherichia coli based on fusion to green fluorescent protein is presented.

Membran proteinlerinin Yeşil floresan proteini temelli Ekspresyon elemesinde<em&gt; Escherichia coli</em

The production of recombinant membrane proteins for structural and functional studies remains technically challenging due to low levels of expression and ...

A Proteoliposome-Based Efflux Assay to Determine Single-molecule Properties of Cl- Channels and Transporters

The last 15 years have been characterized by an explosion in the ability to overexpress and purify membrane proteins from prokaryotic organisms as well as from eukaryotes. This increase has been largely driven by the successful push to obtain structural information on membrane proteins. However, the ability to functionally interrogate these proteins has not advanced at the same rate and is often limited to qualitative assays of limited quantitative value, thereby limiting the mechanistic insights that they can provide. An assay to quantitatively investigate the transport activity of reconstituted Cl- channels or transporters is described. The assay is based on the measure of the efflux rate of Cl- from proteoliposomes following the addition of the K+ ionophore valinomycin to shunt the membrane potential. An ion sensitive electrode is used to follow the time-course of ion efflux from proteoliposomes reconstituted with the desired protein. The method is highly suited for mechanistic studies, as it allows for the quantitative determination of key properties of the reconstituted protein, such as its unitary transport rate, the fraction of active protein and the molecular mass of the functional unit. The assay can also be utilized to determine the effect of small molecule compounds that directly inhibit/activate the reconstituted protein, as well as to test the modulatory effects of the membrane composition or lipid-modifying reagents. Where possible, direct comparison between results obtained using this method were found to be in good agreement with those obtained using electrophysiological approaches. The technique is illustrated using CLC-ec1, a CLC-type H+/Cl- exchanger, as a model system. The efflux assay can be utilized to study any Cl- conducting channel/transporter and, with minimal changes, can be adapted to study any ion-transporting protein.

A Proteoliposome-Based Efflux Assay to Determine Single-molecule Properties of Cl- Channels and Transporters

Proteoliposomes are used to study purified channels and transporters reconstituted in a well-defined biochemical environment. An experimental procedure to measure efflux mediated by these proteins is illustrated. The steps to prepare proteoliposomes, perform the recordings, and analyze data to quantitatively determine the functional properties of the reconstituted protein are described.

Bir Proteoliposome Tabanlı effluks Deney Cl Tek-molekül Properties belirleme<sup&gt; -</sup&gt; Kanallar ve Nakliyeciler

The last 15 years have been characterized by an explosion in the ability to overexpress and purify membrane proteins from prokaryotic organisms as well as ...

Genetic Barcoding with Fluorescent Proteins for Multiplexed Applications

Fluorescent proteins, fluorescent dyes and fluorophores in general have revolutionized the field of molecular cell biology. In particular, the discovery of fluorescent proteins and their genes have enabled the engineering of protein fusions for localization, the analysis of transcriptional activation and translation of proteins of interest, or the general tracking of individual cells and cell populations. The use of fluorescent protein genes in combination with retroviral technology has further allowed the expression of these proteins in mammalian cells in a stable and reliable manner. Shown here is how one can utilize these genes to give cells within a population of cells their own biosignature. As the biosignature is achieved with retroviral technology, cells are barcoded &#180;indefinitely&#180;. As such, they can be individually tracked within a mixture of barcoded cells and utilized in more complex biological applications. The tracking of distinct populations in a mixture of cells is ideal for multiplexed applications such as discovery of drugs against a multitude of targets or the activation profile of different promoters. The protocol describes how to elegantly develop and amplify barcoded mammalian cells with distinct genetic fluorescent markers, and how to use several markers at once or one marker at different intensities. Finally, the protocol describes how the cells can be further utilized in combination with cell-based assays to increase the power of analysis through multiplexing.

Since the discovery of the green fluorescent protein gene, fluorescent proteins have impacted molecular cell biology. This protocol describes how expression of distinct fluorescent proteins through genetic engineering is used for barcoding individual cells. The procedure enables tracking distinct populations in a cell mixture, which is ideal for multiplexed applications.

Multiplexed Uygulamaları için Floresan Proteinleri ile Genetik Barkodlama

Fluorescent proteins, fluorescent dyes and fluorophores in general have revolutionized the field of molecular cell biology. In particular, the discovery ...

Evaluation of Zebrafish Kidney Function Using a Fluorescent Clearance Assay

The zebrafish embryo offers a tractable model to study organogenesis and model human genetic disease. Despite its relative simplicity, the zebrafish kidney develops and functions in almost the same way as humans. A major difference in the construction of the human kidney is the presence of millions of nephrons compared to the zebrafish that has only two. However, simplifying such a complex system into basic functional units has aided our understanding of how the kidney develops and operates. In zebrafish, the midline located glomerulus is responsible for the initial blood filtration into two pronephric tubules that diverge to run bilaterally down the embryonic axis before fusing to each other at the cloaca. The pronephric tubules are heavily populated by motile cilia that facilitate the movement of filtrate along the segmented tubule, allowing the exchange of various solutes before finally exiting via the cloaca2-4. Many genes responsible for CKD, including those related to ciliogenesis, have been studied in zebrafish5. However, a major draw back has been the difficulty in evaluating zebrafish kidney function after genetic manipulation. Traditional assays to measure kidney dysfunction in humans have proved non translational to zebrafish, mainly due to their aquatic environment and small size. For example, it is not physically possible to extract blood from embryonic staged fish for analysis of urea and creatinine content, as they are too small. In addition, zebrafish do not produce enough urine for testing on a simple proteinuria &#8216;dipstick&#8217;, which is often performed during initial patient examinations. We describe a fluorescent assay that utilizes the optical transparency of the zebrafish to quantitatively monitor the clearance of a fluorescent dye, over time, from the vasculature and out through the kidney, to give a read out of renal function1,6-9.

The zebrafish is a popular tool to model chronic kidney disease (CKD). However, their small size makes it impossible to evaluate renal function using traditional methods. We describe a fluorescent dye kidney clearance assay1 that allows quantitative analysis of zebrafish kidney function in CKD.

Bir Floresan Gümrükleme Testi kullanarak Zebra balığı Böbrek Fonksiyon Değerlendirilmesi

The zebrafish embryo offers a tractable model to study organogenesis and model human genetic disease. Despite its relative simplicity, the zebrafish ...

High-throughput Screening for Chemical Modulators of Post-transcriptionally Regulated Genes

Both transcriptional and post-transcriptional regulation have a profound impact on genes expression. However, commonly adopted cell-based screening assays focus on transcriptional regulation, being essentially aimed at the identification of promoter-targeting molecules. As a result, post-transcriptional mechanisms are largely uncovered by gene expression targeted drug development. Here we describe a cell-based assay aimed at investigating the role of the 3&#39; untranslated region (3&#8217; UTR) in the modulation of the fate of its mRNA, and at identifying compounds able to modify it. The assay is based on the use of a luciferase reporter construct containing the 3&#8217; UTR of a gene of interest stably integrated into a disease-relevant cell line. The protocol is divided into two parts, with the initial focus on the primary screening aimed at the identification of molecules affecting luciferase activity after 24 hr of treatment. The second part of the protocol describes the counter-screening necessary to discriminate compounds modulating luciferase activity specifically through the 3&#8217; UTR. In addition to the detailed protocol and representative results, we provide important considerations about the assay development and the validation of the hit(s) on the endogenous target. The described cell-based reporter gene assay will allow scientists to identify molecules modulating protein levels via post-transcriptional mechanisms dependent on a 3&#8217; UTR.

Here we describe a cell-based reporter gene assay as a valuable tool to screen chemical libraries for compounds modulating post-transcriptional control mechanisms exerted through 3&#8217; UTR.

Post-transkripsiyonel ayarlı genlerin kimyasal Modülatörler için yüksek verimli tarama

Both transcriptional and post-transcriptional regulation have a profound impact on genes expression. However, commonly adopted cell-based screening assays ...