1. H. ile makrofajlar enfeksiyonu capsulatum, C. albicans <ol><li> Enfekte edilmeden önce, 16 saat, 24-yuvalı plakalar içinde istenilen yoğunlukta tohum makrofajlar. Bu protokol, iyi bir 3.0 x 10 5 hücre yoğunluğu / kullanıldı. </li><li> Bir enfeksiyon çokluğu istenen (İB) de log-fazı büyümesinde mantar hücreleri ekleyin. Bu protokol İçişleri Bakanlığı bir dizi (- 5.0 0.2) ağırlayacak. H. ile RAW264.7 makrofaj enfeksiyon için capsulatum, biz İçişleri Bakanlığı 0.2 kullanılır. </li><li> 1.5 saat fagositoz izin vermek için sonrasında, hücre-dışı Mantar çıkarmak için PBS ile makrofajlar üç kez yıkayın. </li><li> Numune analizinden önce, istenilen sayıda saat süreyle inkübe edin. (Bizim deneyde 0.2) İçişleri Bakanlığı düşük de, enfekte makrofaj hücreleri birkaç gün için geçerli kalır ve örnekleri yaklaşık her 12-24 saat analiz edilebilir. </li></ol> 2. Makrofaj Lizis <ol><li> Makrofaj hücrelerinden mantar kurtarmak için, ortamı çıkarmak PBS ile 3 kez yıkayın, ve0.5 ml steril su ekleyin. Bu koşullar altında, makrofajlar lize ve mantar hücreleri gibi kalır. </li><li> Oda sıcaklığında 5 dakika süreyle inkübe edilir. </li><li> Buz üzerinde tutmak, steril tüpe lizat aktarın. </li><li> Ayrı bir tüpe 20 ul lizat aktarın, daha sonra 20 ul AO / PI solüsyonu ekleyin. &quot;Numune Hazırlama Resim Sitometrik Analizi&quot;: doğrudan 5. adıma geçin </li></ol> 3. CFU Kaplama <ol><li> Medya lizatları on-kat seyreltme (adım 2.3) yapın. </li><li> Her seyreltme plaka 100 ul, SMM-agaroz plakalar üzerinde, yinelenen. 7-8 gün boyunca% 5 CO2 ile 37 ° C&#39;de nemlendirilmiş bir odasında inkübe edin. </li><li> El 100 en az ve 1000 farklı koloniler en fazla gösteren plakalar üzerinde koloniler sayılır. </li></ol> 4. Canlı Makrofajlar içinde Mantarlar Görselleştirme <ol><li> Canlı makrofajlar toplamak için PBS ile hücreler 3 kez yıkayın. 4, 30 dakika boyunca 0.5 ml PBS ile inkübe ekleme ° C</li><li> Doku kültürü kuyulardan makrofajlar kaldırmak için, hafifçe birkaç kez aşağı yukarı pipet ve. Buz üzerinde tutmak, steril tüpe sıvı aktarın. </li><li> Ayrı bir tüp 20 ul örnek aktarın, sonra 20 ul AO / PI çözüm ekleyin. &quot;Görüntü Sitometrik Analizi için Numune Hazırlama&quot;: doğrudan 5. adıma geçin. </li></ol> 5. Görüntü Sitometrik Analizi için Numune Hazırlama <ol><li> İyice hedef örneğin pipet ve daha sonra tek hücre sayım odası içine örnek 20 ul aktarın. </li><li> Hücreler 30 sn için odasına yerleşmek için izin verin. </li><li> Görüntü sitometresinin içine odası sayma yerleştirin. </li></ol> 6. Cellometer Cihaz Kurulumu <ol><li> Sisteme VB-535-402 ve VB-660-502 ve yerine oturduğundan emin olun: Floresan Optik Modülleri yerleştirin. <ol><li> VB-535-402 kişide (475 nm uyarma, 535 nm emisyon) akridin turuncu ve GFP tespiti için kullanılır. </li><li> VB-660-502 (excitatiüzerine, 540 nm dalga boyunda, 660 nm emisyon), propidyum iyodür tespiti için kullanılır. </li></ol></li><li> Görüntü sitometresinin açın ve beraberindeki yazılımını açın. </li></ol> 7. Cellometer Yazılım Kurulumu <ol><li> Önceden &quot;Test Tipi&quot; ve Testi Açılır Menü içinde &quot;Hücre Tipi&quot; seçeneğini seçin. <ol><li> Canlılığı için, tahlil akridin turuncu ve propidium iyodür algılama için optimize edilmiştir. </li><li> Candida albicans enfeksiyonun tespit edilmesi için, tahlil GFP tespiti için optimize edilmiştir. </li></ol></li><li> Üst &quot;Seçenekler&quot; i seçin ve &quot;alın, Background Image&quot; tıklayın ve işlemi tamamlamak için izin verir. </li><li> &quot;Önizleme Parlak-Alan Resim&quot; tıklayın. </li></ol> 8. Resim Alma Prosedürü <ol><li> Görüntü sitometresinin içine hazırlanan örnek odası yerleştirin. </li><li> Odak düğmesini kullanın ve odağı ayarlayın. </li><li> Bir kez odak, &quot;Count&quot; tıklayın ve görüntü elde etme işlemi tamamlamak için izin verir. </li><li> Remotek sayma odası ettik ve uygun bertaraf edin. </li></ol> 9. Görüntü Veri Analizi <ol><li> Konsantrasyon ve canlılığı ölçüm <ol><li> Sayma tamamlandıktan sonra, hedef hücrelerin konsantrasyonuna ve canlılık sonuç sayfasında görüntülenir. </li><li> Candida albicans enfeksiyonu deneyde GFP hücre popülasyonu analizi için FCS Express 4 içine veri ihracat &quot;İhracat&quot; tıklayın. </li></ol></li><li> Candida albicans, infekte olmuş hücrelerin FCS Hızlı analizi <ol><li> FCS Express 4 ve arsa bir floresan histogram sonuçları içine &quot;. NXDAT&quot; dosyasını içe aktarın. </li><li> Candida albicans ile enfekte olmuş hücreler topluluğundaki yüzdesini tespit etmek için histogram hücre popülasyonu kapı uygulamak. </li></ol></li></ol>

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	<li>Worsham, P. L., Goldman, W. E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Quantitative+plating+of+Histoplasma+capsulatum+without+addition+of+conditioned+medium+or+siderophores.">Quantitative plating of Histoplasma capsulatum without addition of conditioned medium or siderophores.</a> J. Med. Vet. Mycol. 26, 137-143 (1988).</li><li>Goihman-Yahr, M., Pine, L., Albornoz, M. C., Yarzabal, L., de Gomez, M. H., San Martin, B., Ocanto, A., Molina, T., Convit, J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Studies+on+plating+efficiency+and+estimation+of+viability+of+suspensions+of+Paracoccidioides+brasiliensis+yeast+cells.">Studies on plating efficiency and estimation of viability of suspensions of Paracoccidioides brasiliensis yeast cells.</a> Mycopathologia. 71, 73-83 (1980).</li><li>Bhatti, M. 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S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Flow+cytometric+quantitation+of+yeast:+a+novel+technique+for+use+in+animal+model+work+and+in+vitro+immunologic+assays.">Flow cytometric quantitation of yeast: a novel technique for use in animal model work and in vitro immunologic assays.</a> Journal of Immunological Methods. 211, 51-63 (1998).</li><li>Green, L., Petersen, B., Steimel, L., Haeber, P., Current, W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Rapid+determination+of+antifungal+activity+by+flow+cytometry.">Rapid determination of antifungal activity by flow cytometry.</a> Journal of Clinical Microbiology. 32, 1088-1091 (1994).</li><li>Kirk, S. M., Callister, S. M., Lim, L. C., Schell, R. F. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Rapid+susceptibility+testing+of+Candida+albicans+by+flow+cytometry.">Rapid susceptibility testing of Candida albicans by flow cytometry.</a> Journal of Clinical Microbiology. 35, 358-363 (1997).</li><li>Chan, L. L. -. Y., Lai, N., Wang, E., Smith, T., Yang, X., Lin, B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+rapid+detection+method+for+apoptosis+and+necrosis+measurement+using+the+Cellometer+imaging+cytometry.">A rapid detection method for apoptosis and necrosis measurement using the Cellometer imaging cytometry.</a> Apoptosis. 16, 1295-1303 (2011).</li><li>Chan, L. L. -. Y., Shen, D., Wilkinson, A. 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L., Zhong, X., Pirani, A., Lin, B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+novel+method+for+kinetic+measurements+of+rare+cell+proliferation+using+Cellometer+image-based+cytometry.">A novel method for kinetic measurements of rare cell proliferation using Cellometer image-based cytometry.</a> J. Immunol. Methods. 377, 8-14 (2012).</li><li>Chan, L. L., Zhong, X., Qiu, J., Li, P. Y., Lin, B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cellometer+Vision+as+an+alternative+to+flow+cytometry+for+cell+cycle+analysis,+mitochondrial+potential,+and+immunophenotyping.">Cellometer Vision as an alternative to flow cytometry for cell cycle analysis, mitochondrial potential, and immunophenotyping.</a> Cytom. Part A. 79, 507-517 (2011).</li><li>Hull, C. M., Johnson, A. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Identification+of+a+mating+type-like+locus+in+the+asexual+pathogenic+yeast+Candida+albicans.">Identification of a mating type-like locus in the asexual pathogenic yeast Candida albicans.</a> Science. 285, 1271-1275 (1999).</li><li>Berkes, C. A., Chan, L. L., Wilkinson, A., Paradis, B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Rapid+Quantification+of+Pathogenic+Fungi+by+Cellometer+Image-Based+Cytometry.">Rapid Quantification of Pathogenic Fungi by Cellometer Image-Based Cytometry.</a> J. Micro. Meth. 91, 468-476 (2012).</li><li>Nguyen, V. 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Yazarlar Leo Li-Ying Chan ve Benjamin Paradis Nexcelom Biyobilim LLC çalışanlarıdır.

Resim sitometri kullanıcı yüksek kaliteli çekim ve, özel yazılım kullanarak, hücrelerin hızlı ölçümü yapmak için izin verir. Mikrobiyal patogenez alanında görüntü sitometrisi benimsenmesine bir potansiyel bir sorun sayılması için mikrop memeli konak hücreleri arasında hücre, karışık bir popülasyonu içinde mevcut olmasıdır. Burada, görüntü sitometri in vitro makrofaj enfeksiyon sırasında canlı patojenik maya ölçümü için kullanılabilir olduğunu göstermektedir...

Kendi ana ve / veya ana hücreleri ile birlikte patojenik mantarların çalışmalar genellikle bir zaman boyunca veya farklı enfeksiyon koşullar altında canlı mantar hücreleri ölçümü gerektirir. Koloni oluşturan birim sayımı (CFU) uygun bir mantar hücre sayısı ölçülmüştür hangi standart bir yöntem olup, ancak bu teknik, çeşitli dezavantajları ve sınırlamaları vardır. İlk olarak, birçok mantar türleri yavaş büyüyen vardır. Katı ortam üzerinde görünür kolonilerin büyüme önemli ölçüde araştırma hızını yavaşlatan, 1-2 hafta sürebilir. Birkaç seyreltme kolonilerin sayılabilir miktarda sağlamak için kaplama gerekir çünkü ikinci, CFU kaplama sırasında örneklerin manipülasyon, zahmetli bir süreçtir. Kaplama verimi de% 100&#39;ün altında, çünkü Üçüncü olarak, CFU sayısını kaplama canlı organizmaların sayısı genellikle daha düşüktür. Örneğin, dimorfik fungal patojen Histoplasma capsulatum için kaplama verimliliği% 90 kadar yüksek olabilir, ama rutin olarak düşük olabilir% 30 ve ilgili mantar dimorph Paracoccidioides brasiliensis, 1, 2 (% 10) daha düşüktür. Candida albicans için kaplama verimi de değişkenlik 3 tabidir. Birçok durumda, bu ölü ve / veya metabolik olarak aktif olmayan hücrelerin varlığı ve konsantrasyonu belirlemek için yararlı olacaktır, oysa Son olarak, CFU analizi, katı ortam üzerinde büyüme oluflturabildikleri sadece canlı ve aktif olarak bölünen hücreler için hesaplar. Daha önce, çeşitli patojenik mantar türlerinin miktarının tayini için akış sitometrisi ile 4-6 yöntemler tarif edilmiştir. Ancak, paylaşılan akış sitometrelerinde biyogüvenlik düzeyi 2 (BSL2) veya BSL3 düzeyinde patojenler ile ile ilgili biyogüvenlik muhafaza sorunları nedeniyle, bu tekniğin benimsenmesi sınırlı kalmıştır. Akım sitometri gibi, görüntü sitometri hücre miktarının bir hassas ve hızlı bir yöntemdir. Ancak, görüntü sitometri karşılaştırılabilir sonuçlar 7 ile maliyetinin bir kısmını yapılabilir -11. Burada, ev sahibi hücrelerle ilişkili olarak patojenik mantarların görüntü sitometrisi gerçekleştirmek için yöntemler tarif eder. Biz iki insan mantar patojenleri kullanarak yöntemleri göstermek: Histoplasma capsulatum ve Candida albicans H.. capsulatum solunum hastalığı neden olan bir dimorfik fungal patojendir, insanlarda, o kadar tomurcuklanan maya büyür ve makrofaj içinde çoğaltır Candida albicans bazen kandidiyazis neden olan bir insan ortakçı türdür.. Biz görüntü sitometri görselleştirme yeteneği ile birlikte, bu maya hızlı ölçümü sağlar olduğunu göstermektedir.

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			<td>Life Technologies</td>
			<td>11965-084</td>
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			<td>Life Technologies</td>
			<td>16000044</td>
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use of image cytometry for quantification of pathogenic fungi in association with host cells

Bu Candida albicans, Histoplasma capsulatum ve Cryptococcus neoformans gibi patojenik maya hücresel patogenezi mekanizmaların Çalışmaları genellikle birim analiz veya akım sitometri oluşturan koloni kullanarak maya miktar takip memeli ana veya ana hücreler (yani makrofajlar) enfeksiyonu kullanır. Koloni oluşturan birim numaralandırma alanında en sık kullanılan yöntem olsa da, bu tekniğin büyüme karşılaştırırken özellikle endişe vericidir katı ortam ve düşük ve / veya değişken kaplama verimliliği, bazı mantar türlerinin yavaş büyüme de dahil olmak üzere, dezavantajları ve sınırlamaları vardır Yabani tip ve mutant. Flow sitometri maya canlılığı ile ilgili hızlı bir niceliksel bilgi sağlayabilir, ancak, patojenik maya için akım sitometrik algılama benimsenmesinin yüksek maliyet ve biyogüvenlik konuları da dahil olmak üzere pratik nedenlerle bir dizi için sınırlı kalmıştır. Burada, bir görüntü tabanlı göstermekmakrofajlar ile birlikte kültür canlı patojenik maya ölçümü için Cellometer Vizyon (Bioscience Nexcelom, LLC) kullanarak sitometrik yöntem. Histoplasma capsulatum ve Candida albicans H.:. Çalışmalarımız iki insan fungal patojenlerin tespit odaklanmak capsulatum makrofaj phagosome içinde çoğaltarak makrofaj kolonize ve burada, biz kantitatif H. büyüme değerlendirmek görüntü sitometrisi ile birlikte akridin turuncu / propidyum iyodür boyaması kullanılarak bir RAW 264.7 makrofajlarda capsulatum mayalar. Bizim yöntemi sadakatle birim numaralandırma oluşturan geleneksel koloni ile ölçülen özetlediği büyüme trendleri, ancak önemli ölçüde artmış duyarlılık ile. Ayrıca, doğrudan C. bir GFP-ifade suşu ile canlı makrofaj enfeksiyonu değerlendirmek albicans. Bizim metodoloji ilişki zekâ önemli insan fungal patojenlerin tespiti ve ölçümü için bir, hızlı, doğru ve ekonomik bir araç sunuyors konakçı hücreler sunar.

Biz H. büyüme izlemek için Cellometer Vizyon görüntü sitometresinin kullanılır makrofaj hücrelerinde capsulatum. RAW 264.7 hücreleri H. ile enfekte edildi Çeşitli zaman noktalarında capsulatum maya hücreleri ve, örnekler görüntü-bazlı sitometrik analizi ile AO / PI boyama tabi tutuldu. Buna paralel olarak, örnekler geleneksel CFU numaralandırma ile analiz edildi. Her zaman noktasında, örnekler makrofajlar eritmek için su içinde inkübe edildi ve serbest kalan ...

Watch this Scientific Journal Video about Use of Image Cytometry for Quantification of Pathogenic Fungi in Association with Host Cells at JoVE.com

Use of Image Cytometry for Quantification of Pathogenic Fungi in Association with Host Cells

Burada, görüntü sitometrisi kültür ev sahibi hücrelerle ilişkili olarak patojenik mantarların ölçümü için nasıl kullanılabileceğini göstermektedir. Bu teknik, CFU sayımı için bir alternatif olarak kullanılabilir.

Ana Hücreler ile Derneği Patojen Mantarlar miktarının Image for Sitometrinin kullanın

Studies of the cellular pathogenesis mechanisms of pathogenic yeasts such as Candida albicans, Histoplasma capsulatum, and Cryptococcus neoformans ...

use-image-cytometry-for-quantification-pathogenic-fungi-association

Research

JoVE Journal

Immunology and Infection

12.8K Görüntüleme.  Merrimack College. Burada, görüntü sitometrisi kültür ev sahibi hücrelerle ilişkili olarak patojenik mantarların ölçümü için nasıl kullanılabileceğini göstermektedir. Bu teknik, CFU sayımı için bir alternatif olarak kullanılabilir.

Video: Use of Image Cytometry for Quantification of Pathogenic Fungi in Association with Host Cells

Quantitative Assessment of Immune Cells in the Injured Spinal Cord Tissue by Flow Cytometry:  a Novel Use for a Cell Purification Method

Detection of immune cells in the injured central nervous system (CNS) using morphological or histological techniques has not always provided true quantitative analysis of cellular inflammation. Flow cytometry is a quick alternative method to quantify immune cells in the injured brain or spinal cord tissue. Historically, flow cytometry has been used to quantify immune cells collected from blood or dissociated spleen or thymus, and only a few studies have attempted to quantify immune cells in the injured spinal cord by flow cytometry using fresh dissociated cord tissue. However, the dissociated spinal cord tissue is concentrated with myelin debris that can be mistaken for cells and reduce cell count reliability obtained by the flow cytometer. We have advanced a cell preparation method using the OptiPrep gradient system to effectively separate lipid/myelin debris from cells, providing sensitive and reliable quantifications of cellular inflammation in the injured spinal cord by flow cytometry. As described in our recent study (Beck &amp; Nguyen et al., Brain. 2010 Feb; 133 (Pt 2): 433-47), the OptiPrep cell preparation had increased sensitivity to detect cellular inflammation in the injured spinal cord, with counts of specific cell types correlating with injury severity. Critically, novel usage of this method provided the first characterization of acute and chronic cellular inflammation after SCI to include a complete time course for polymorphonuclear leukocytes (PMNs, neutrophils), macrophages/microglia, and T-cells over a period ranging from 2 hours to 180 days post-injury (dpi), identifying a surprising novel second phase of cellular inflammation. Thorough characterization of cellular inflammation using this method may provide a better understanding of neuroinflammation in the injured CNS, and reveal an important multiphasic component of neuroinflammation that may be critical for the design and implementation of rational therapeutic treatment strategies, including both cell-based and pharmacological interventions for SCI.

Quantification of cellular inflammation in the injured/pathological CNS by flow cytometry is complicated by lipid/myelin debris that can have similar size and granulation to cells, decreasing sensitivity/accuracy. We have advanced a cell preparation method to remove myelin debris and improve cell detection by flow cytometry in the injured spinal cord.

Akış Sitometri Yaralı Omurilik Doku Bağışıklık Hücreleri Kantitatif Değerlendirilmesi: Hücre Arıtma Yöntemi Roman kullanın

Detection of immune cells in the injured central nervous system (CNS) using morphological or histological techniques has not always provided true ...

İmmünoloji ve Enfeksiyon

Use of an Optical Trap for Study of Host-Pathogen Interactions for Dynamic Live Cell Imaging

Dynamic live cell imaging allows direct visualization of real-time interactions between cells of the immune system1, 2; however, the lack of spatial and temporal control between the phagocytic cell and microbe has rendered focused observations into the initial interactions of host response to pathogens difficult. Historically, intercellular contact events such as phagocytosis3 have been imaged by mixing two cell types, and then continuously scanning the field-of-view to find serendipitous intercellular contacts at the appropriate stage of interaction. The stochastic nature of these events renders this process tedious, and it is difficult to observe early or fleeting events in cell-cell contact by this approach. This method requires finding cell pairs that are on the verge of contact, and observing them until they consummate their contact, or do not. To address these limitations, we use optical trapping as a non-invasive, non-destructive, but fast and effective method to position cells in culture.
Optical traps, or optical tweezers, are increasingly utilized in biological research to capture and physically manipulate cells and other micron-sized particles in three dimensions4. Radiation pressure was first observed and applied to optical tweezer systems in 19705, 6, and was first used to control biological specimens in 19877. Since then, optical tweezers have matured into a technology to probe a variety of biological phenomena8-13.
We describe a method14 that advances live cell imaging by integrating an optical trap with spinning disk confocal microscopy with temperature and humidity control to provide exquisite spatial and temporal control of pathogenic organisms in a physiological environment to facilitate interactions with host cells, as determined by the operator. Live, pathogenic organisms like Candida albicans and Aspergillus fumigatus, which can cause potentially lethal, invasive infections in immunocompromised individuals15, 16 (e.g. AIDS, chemotherapy, and organ transplantation patients), were optically trapped using non-destructive laser intensities and moved adjacent to macrophages, which can phagocytose the pathogen. High resolution, transmitted light and fluorescence-based movies established the ability to observe early events of phagocytosis in living cells. To demonstrate the broad applicability in immunology, primary T-cells were also trapped and manipulated to form synapses with anti-CD3 coated microspheres in vivo, and time-lapse imaging of synapse formation was also obtained. By providing a method to exert fine spatial control of live pathogens with respect to immune cells, cellular interactions can be captured by fluorescence microscopy with minimal perturbation to cells and can yield powerful insight into early responses of innate and adaptive immunity.

A method is described to individually select, manipulate, and image live pathogens using an optical trap coupled to a spinning disk microscope. The optical trap provides spatial and temporal control of organisms and places them adjacent to host cells. Fluorescence microscopy captures dynamic intercellular interactions with minimal perturbation to cells.

Dinamik Canlı Hücre Görüntüleme Konukçu-Patojen Etkileşimleri Çalışma Optik Tuzak

Dynamic live cell imaging allows direct visualization of real-time interactions between cells of the immune system1, 2; however, the lack of spatial and ...

Use of the EpiAirway Model for Characterizing Long-term Host-pathogen Interactions

Nontypeable Haemophilus influenzae (NTHi) are human-adapted Gram-negative bacteria that can cause recurrent and chronic infections of the respiratory mucosa 1; 2. To study the mechanisms by which these organisms survive on and inside respiratory tissues, a model in which successful long-term co-culture of bacteria and human cells can be performed is required. We use primary human respiratory epithelial tissues raised to the air-liquid interface, the EpiAirway model (MatTek, Ashland, MA). These are non-immortalized, well-differentiated, 3-dimensional tissues that contain tight junctions, ciliated and nonciliated cells, goblet cells that produce mucin, and retain the ability to produce cytokines in response to infection. 
This biologically relevant in vitro model of the human upper airway can be used in a number of ways; the overall goal of this method is to perform long-term co-culture of EpiAirway tissues with NTHi and quantitate cell-associated and internalized bacteria over time. As well, mucin production and the cytokine profile of the infected co-cultures can be determined. This approach improves upon existing methods in that many current protocols use submerged monolayer or Transwell cultures of human cells, which are not capable of supporting bacterial infections over extended periods3. For example, if an organism can replicate in the overlying media, this can result in unacceptable levels of cytotoxicity and loss of host cells, arresting the experiment. The EpiAirway model allows characterization of long-term host-pathogen interactions. Further, since the source for the EpiAirway is normal human tracheo-bronchial cells rather than an immortalized line, each is an excellent representation of actual human upper respiratory tract tissue, both in structure and in function4.
For this method, the EpiAirway tissues are weaned off of anti-microbial and anti-fungal compounds for 2 days prior to delivery, and all procedures are performed under antibiotic-free conditions. This necessitates special considerations, since both bacteria and primary human tissues are used in the same biosafety cabinet, and are co-cultured for extended periods.

This method allows characterization of extended bacterial co-culture with EpiAirways, primary human respiratory epithelial tissue grown at the air-liquid interface, a biologically relevant in vitro model. The approach can be used with any microbe that is amenable to long-term co-culture.

Uzun vadeli Host-patojen Etkileşimleri karakterize EpiAirway Model kullanın.

Nontypeable Haemophilus influenzae  (NTHi) are human-adapted Gram-negative bacteria that can cause recurrent and chronic infections of the respiratory ...

Fluorescence Microscopy Methods for Determining the Viability of Bacteria in Association with Mammalian Cells

Central to the field of bacterial pathogenesis is the ability to define if and how microbes survive after exposure to eukaryotic cells. Current protocols to address these questions include colony count assays, gentamicin protection assays, and electron microscopy. Colony count and gentamicin protection assays only assess the viability of the entire bacterial population and are unable to determine individual bacterial viability. Electron microscopy can be used to determine the viability of individual bacteria and provide information regarding their localization in host cells. However, bacteria often display a range of electron densities, making assessment of viability difficult. This article outlines protocols for the use of fluorescent dyes that reveal the viability of individual bacteria inside and associated with host cells. These assays were developed originally to assess survival of Neisseria gonorrhoeae in primary human neutrophils, but should be applicable to any bacterium-host cell interaction. These protocols combine membrane-permeable fluorescent dyes (SYTO9 and 4&#39;,6-diamidino-2-phenylindole [DAPI]), which stain all bacteria, with membrane-impermeable fluorescent dyes (propidium iodide and SYTOX Green), which are only accessible to nonviable bacteria. Prior to eukaryotic cell permeabilization, an antibody or fluorescent reagent is added to identify extracellular bacteria. Thus these assays discriminate the viability of bacteria adherent to and inside eukaryotic cells. A protocol is also provided for using the viability dyes in combination with fluorescent antibodies to eukaryotic cell markers, in order to determine the subcellular localization of individual bacteria. The bacterial viability dyes discussed in this article are a sensitive complement and/or alternative to traditional microbiology techniques to evaluate the viability of individual bacteria and provide information regarding where bacteria survive in host cells.

Central to the field of bacterial pathogenesis is the ability to define if and how microbes survive after exposure to eukaryotic cells. This article outlines protocols for the use of fluorescent dyes that reveal the viability of individual bacteria inside and associated with host cells.

Memeli Hücreleri ile Derneği&#39;nin Bakterilerin Canlılık belirlenmesi için Floresan Mikroskopi Yöntemleri

Central to the field of bacterial pathogenesis is the ability to define if and how microbes survive after exposure to eukaryotic cells. Current protocols ...

Porphyromonas gingivalis as a Model Organism for Assessing Interaction of Anaerobic Bacteria with Host Cells

Anaerobic bacteria far outnumber aerobes in many human niches such as the gut, mouth, and vagina. Furthermore, anaerobic infections are common and frequently of indigenous origin. The ability of some anaerobic pathogens to invade human cells gives them adaptive measures to escape innate immunity as well as to modulate host cell behavior. However, ensuring that the anaerobic bacteria are live during experimental investigation of the events may pose challenges. Porphyromonas gingivalis, a Gram-negative anaerobe, is capable of invading a variety of eukaryotic non-phagocytic cells. This article outlines how to successfully culture and assess the ability of P. gingivalis to invade human umbilical vein endothelial cells (HUVECs). Two protocols were developed: one to measure bacteria that can successfully invade and survive within the host, and the other to visualize bacteria interacting with host cells. These techniques necessitate the use of an anaerobic chamber to supply P. gingivalis with an anaerobic environment for optimal growth.
The first protocol is based on the antibiotic protection assay, which is largely used to study the invasion of host cells by bacteria. However, the antibiotic protection assay is limited; only intracellular bacteria that are culturable following antibiotic treatment and host cell lysis are measured. To assess all bacteria interacting with host cells, both live and dead, we developed a protocol that uses fluorescent microscopy to examine host-pathogen interaction. Bacteria are fluorescently labeled with 2&#39;,7&#39;-Bis-(2-carboxyethyl)-5-(and-6)-carboxyfluorescein acetoxymethyl ester (BCECF-AM) and used to infect eukaryotic cells under anaerobic conditions. Following fixing with paraformaldehyde and permeabilization with 0.2% Triton X-100, host cells are labeled with TRITC phalloidin and DAPI to label the cell cytoskeleton and nucleus, respectively. Multiple images taken at different focal points (Z-stack) are obtained for temporal-spatial visualization of bacteria. Methods used in this study can be applied to any cultivable anaerobe and any eukaryotic cell type.

Porphyromonas gingivalis as a Model Organism for Assessing Interaction of Anaerobic Bacteria with Host Cells

This article presents two protocols: one to measure anaerobic bacteria that can successfully invade and survive within the host, and the other to visualize anaerobic bacteria interacting with host cells. This study can be applied to any cultivable anaerobe and any eukaryotic cell type.

Ana Hücreleri ile Anaerobik Bakteriler Etkileşim değerlendirilmesi için bir model organizma olarak Porphyromonas gingivalis

Anaerobic bacteria far outnumber aerobes in many human niches such as the gut, mouth, and vagina. Furthermore, anaerobic infections are common and ...

The Use of Flow Cytometry to Assess the State of Chromatin in T Cells

During a proper immune response, quiescent T cells become activated upon antigen presentation to their antigen-specific T cell receptor. This leads to clonal proliferation of only those T cells that bear a receptor that recognizes the antigen. Chromatin decondensation is a hallmark of T cell activation and is required for T cells to acquire the ability to proliferate after antigen engagement. This change in chromatin condensation can be detected using antibodies raised against histone proteins. These antibodies cannot bind to their epitopes in na&#239;ve T cells as well as they can in activated T cells. We describe how to simultaneously stain T cell-specific surface markers, track viability with a fixable dead cell stain, and measure chromatin status via intracellular staining of Histone H3 proteins. Stained cells are analyzed by flow cytometry and chromatin condensation status is measured as the mean fluorescence intensity (MFI) of the Histone H3 stain. Chromatin decondensation during T cell activation is demonstrated as an increase in the MFI

Flow cytometry can be utilized to assess the state of chromatin within T cells. This protocol allows scientists to interpret evidence of chromatin decondensation during T cell activation demonstrated by an increase in the mean florescence intensity (MFI) of fluorescent Histone H3 antibodies

Akış Sitometrinin Kullanımı T Hücrelerinde Kromatin Devleti değerlendirmek için

During a proper immune response, quiescent T cells become activated upon antigen presentation to their antigen-specific T cell receptor. This leads to ...

Multicolor Flow Cytometry-based Quantification of Mitochondria and Lysosomes in T Cells

T cells utilize different metabolic programs to match their functional needs during differentiation and proliferation. Mitochondria are crucial cellular components responsible for supplying cell energy; however, excess mitochondria also produce reactive oxygen species (ROS) that could cause cell death. Therefore, the number of mitochondria must constantly be adjusted to fit the needs of the cells. This dynamic regulation is achieved in part through the function of lysosomes that remove surplus/damaged organelles and macromolecules. Hence, cellular mitochondrial and lysosomal contents are key indicators to evaluate the metabolic adjustment of cells. With the development of probes for organelles, well-characterized lysosome or mitochondria-specific dyes have become available in various formats to label cellular lysosomes and mitochondria. Multicolor flow cytometry is a common tool to profile cell phenotypes, and has the capability to be integrated with other assays. Here, we present a detailed protocol of how to combine organelle-specific dyes with surface markers staining to measure the amount of lysosomes and mitochondria in different T cell populations on a flow cytometer.

This article illustrates a powerful method to quantify mitochondria or lysosomes in living cells. The combination of lysosome- or mitochondria-specific dyes with fluorescently conjugated antibodies against surface markers allows the quantification of these organelles in mixed cell populations, like primary cells harvested from tissue samples, by using multicolor flow cytometry.

Çok renkli akış sitometresi tabanlı Quantification mitokondri ve T hücrelerde organellerin

T cells utilize different metabolic programs to match their functional needs during differentiation and proliferation. Mitochondria are crucial cellular ...

An Advanced Murine Model for Nonalcoholic Steatohepatitis in Association with Type 2 Diabetes

Obesity is associated with chronic low-grade inflammation and insulin resistance, contributing to an increasing prevalence of chronic metabolic diseases, such as type 2 diabetes and nonalcoholic steatohepatitis (NASH). Recent research has established that pro-inflammatory immune cells infiltrate obese hypertrophic adipose tissue and liver. Given the emerging importance of immune cells in the context of metabolic homeostasis, there is a critical need to quantify and characterize their modification during the development of type 2 diabetes and NASH. However, animal models that induce pathophysiological features typical of human NASH are sparse.
In this article, we provide a detailed protocol to identify immune cell subsets isolated from liver and adipose tissue in a reliable mouse model of NASH, established by housing high-fat diet (HFD) mice under non-specific pathogen-free (SPF) conditions without a barrier for at least seven weeks. We demonstrate the handling of mice in non-SPF conditions, digestion of the tissues and identification of macrophages, natural killer (NK) cells, dendritic cells, B and T cell subsets by flow cytometry. Representative flow cytometry plots from SPF HFD mice and non-SPF mice are provided. To obtain reliable and interpretable data, the use of antibodies, accurate and precise methods for tissue digestion and proper gating in flow cytometry experiments are critical elements.
The intervention to restore physiological antigen exposure in mice by housing them in non-SPF conditions and unspecific exposure to microbial antigens could provide a relevant tool for investigating the link between immunological alterations, diet-induced obesity and related long term complications.

A simple and reliable diet-induced rodent animal model for nonalcoholic steatohepatitis (NASH) is described, achieved through non-SPF housing of the animals and administration of a specific high-fat diet. We describe identification of hepatic and adipose immune cell subsets to recapitulate human immunological conditions by exposing mice to environmental germs.

Tip 2 diyabet ile Ilişkisi olmayan alkollü steatohepatit için gelişmiş bir Murine modeli

Obesity is associated with chronic low-grade inflammation and insulin resistance, contributing to an increasing prevalence of chronic metabolic diseases, ...

Analysis of SAMHD1 Restriction by Flow Cytometry in Human Myeloid U937 Cells

Sterile &#945;-motif/histidine-aspartate domain-containing protein 1 (SAMHD1) inhibits replication of HIV-1 in quiescent myeloid cells. U937 cells are widely used as a convenient cell system for analyzing SAMHD1 activity due to a low level of SAMHD1 RNA expression, leading to undetectable endogenous protein expression. Based on similar assays developed in the Stoye laboratory to characterize other retroviral restriction factors, the Bishop lab developed a two-color restriction assay to analyze SAMHD1 in U937 cells. Murine Leukaemia Virus-like particles expressing SAMHD1, alongside YFP expressed from an IRES, are used to transduce U937 cells. Cells are then treated with phorbol myristate acetate to induce differentiation to a quiescent phenotype. Following differentiation, cells are infected with HIV-1 virus-like particles expressing a fluorescent reporter. After 48 h, cells are harvested and analyzed by flow cytometry. The proportion of HIV-infected cells in the SAMHD1-expressing population is compared to that in internal control cells lacking SAMHD1. This comparison reveals a restriction ratio. SAMHD1 expression leads to a five-fold reduction in HIV infection, corresponding to a restriction ratio of 0.2. Our recent substitution of RFP for the original GFP as the reporter gene for HIV infection has facilitated flow cytometry analysis.
This assay has been successfully used to characterize the effect of amino acid substitutions on SAMHD1 restriction by transducing with viruses encoding altered SAMHD1 proteins, derived from site-directed mutagenesis of the expression vector. For example, the catalytic site substitutions HD206-7AA show a restriction phenotype of 1, indicating a loss of restriction activity. Equally, the susceptibility of different tester viruses can be determined. The assay can be further adapted to incorporate the effect of differentiation status, metabolic status, and SAMHD1 modifiers to better understand the relationship between SAMHD1, cell metabolic state, and viral restriction.

Described here is an established method to determine the extent of HIV-1 restriction by the cellular inhibitory protein SAMHD1. Human myeloid lineage U937 cells are transduced with a SAMHD1 expression vector co-expressing YFP, differentiated and then challenged with HIV-RFP. The level of restriction is determined by flow cytometry analysis.

İnsan Miyeloid U937 Hücrelerinde Akış Sitometrisi ile SAMHD1 Kısıtlamasının Analizi

Sterile &#945;-motif/histidine-aspartate domain-containing protein 1 (SAMHD1) inhibits replication of HIV-1 in quiescent myeloid cells. U937 cells are ...

An Automated Culture System for Use in Preclinical Testing of Host-Directed Therapies for Tuberculosis

Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis (TB), was the most significant infectious disease killer globally until the advent of COVID-19. Mtb has evolved to persist in its intracellular environment, evade host defenses, and has developed resistance to many anti-tubercular drugs. One approach to solving resistance is identifying existing&#160;approved drugs that will boost the host immune response to Mtb. These drugs could then be repurposed as adjunctive host-directed therapies (HDT) to shorten treatment time and help overcome antibiotic resistance.
Quantification of intracellular Mtb growth in macrophages is a crucial aspect of assessing potential HDT. The gold standard for measuring Mtb growth is counting colony-forming units (CFU) on agar plates. This is a slow, labor-intensive assay that does not lend itself to rapid screening of drugs. In this protocol, an automated, broth-based culture system, which is more commonly used to detect Mtb in clinical specimens, has been adapted for preclinical screening of host-directed therapies. The capacity of the liquid culture assay system to investigate intracellular Mtb growth in macrophages treated with HDT was evaluated. The HDTs tested for their ability to inhibit Mtb growth were all-trans Retinoic acid (AtRA), both in solution and encapsulated in poly(lactic-co-glycolic acid) (PLGA) microparticles and the combination of interferon-gamma and linezolid. The advantages of this automated liquid culture-based technique over the CFU method include simplicity of setup, less labor-intensive preparation, and faster time to results (5-12 days compared to 21 days or more for agar plates).

Rapid and efficient quantification of intracellular M. tuberculosis growth is crucial for pursuing improved therapies against tuberculosis (TB). This protocol describes a broth-based colorimetric detection assay using an automated liquid culture system to quantify Mtb growth in macrophages treated with candidate host-directed therapies.

Tüberküloz için Ev Sahibi Tarafından Yönlendirilen Tedavilerin Preklinik Testlerinde Kullanılmak Üzere Otomatik Bir Kültür Sistemi

Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis (TB), was the most significant infectious disease killer globally until the advent ...