We thank Dr. S. Tanaka at Tokyo Institute of Technology for time-resolved IR vibrational spectroscopy measurements and Prof. M. Hara and Dr. K. Matsuo at Nagoya University for XRD measurements. We also thanks Prof. S. Yamaguchi at Nagoya University, Prof. R. Herges at Kiel University and Prof. R. J. D. Miller at the Max Planck Institute for the Structure and Dynamics of Matter for valuable discussion.
This work is supported by the Japanese Science Technology (JST), PRESTO, for funding the projects "Molecular technology and creation of new functions" (Grant Number of JPMJPR13KD, JPMJPR12K5, and JPMJPR16P6) and "Chemical conversion of light energy". This work is also partially supported by JSPS Grant Numbers JP15H02103, JP17K17893, JP15H05482, JP17H05258, JP26107004, and JP17H06375.

1.Time-Resolved Infrared Vibrational Spectroscopy
<ol>
	<li>Sample preparation
	<ol>
		<li>Solution: Dissolve the &#960;-extended cyclooctatetraene (&#960;-COT) molecules into dichloromethane with proper concentration (1 mmol/L).</li>
		<li>LC phase: Melt the &#960;-COT powder on a calcium fluoride (CaF2) substrate using hot plate at the temperature of 100 &#176;C. Cool the sample at a room temperature. 
		Note: We need to choose a material (CaF2 or barium fluoride (BaF2...

The authors have nothing to disclose.

The crucial step of the process during the time-resolved electron diffraction measurements is maintaining the high voltage (75 keV) without current fluctuation since the distance between the photocathode and anode plate is only ~10 mm. If the current fluctuates above the range of 0.1 &#181;A before or during the experiments, increase the acceleration voltage up to 90 keV to discharge and set it again to 75 keV. This conditioning process has to be done until the current fluctuates in the range of 0.1 &#181;A. The proper d...

Liquid crystals (LCs) have a variety of functions and are widely used in scientific and technological applications1,2,3,4,5,6. The behavior of LCs can be attributed to their orientational ordering as well as to the high mobility of their molecules. A molecular structure of LC materials is typically characterized by a mesogen core and long flexible carbon chains that ensure high mobility of the LC molecules. Under external stimuli7,8,9,10,11,12,13,14,15, such as light, electric fields, temperature changes, or mechanical pressure, small intra- and intermolecular motions of the LC molecules cause drastic structural reordering in the system, leading to its functional behavior. To understand the functions of LC materials, it is important to determine the molecular scale structure in the LC phase and identify the key motions of the molecular conformations and packing deformations.
X-ray diffraction (XRD) is commonly employed as a powerful tool for determining structures of LC materials16,17,18. However, the diffraction pattern originating from a functional stimuli-responsive core is often concealed by a broad halo pattern from the long carbon chains. An effective solution to this problem is provided by time-resolved diffraction analysis, which enables direct observations of molecular dynamics using photoexcitation. This technique extracts structural information about the photoresponsive aromatic moiety using the differences between the diffraction patterns obtained before and after photoexcitation. These differences provide the means both to remove the background noise and to directly observe the structural changes of interest. Analyses of the differential diffraction patterns reveal the modulated signals from the photoactive moiety alone, thereby excluding the deleterious diffraction from the non-photoresponsive carbon chains. A description of this method of differential diffraction analysis is provided in Hada, M. et al19.
Time-resolved diffraction measurements can provide structural information about the atomic rearrangements that occur during the phase transition in materials20,21,22,23,24,25,26,27,28,29 and chemical reactions among molecules30,31,32,33,34. With these applications in mind, remarkable progress has been made in the development of ultrabright and ultrashort-pulsed X-ray35,36 and electron37,38,39,40 sources. However, time-resolved diffraction has only been applied to simple, isolated molecules or to single- or poly-crystals, in which highly ordered inorganic lattice or organic molecules produce well-resolved diffraction patterns providing structural information. In contrast, ultrafast structural analyses of more complex soft materials have been hampered because of their less ordered phases. In this study, we demonstrate the use of time-resolved electron diffraction as well as transient absorption spectroscopy and time-resolved infrared (IR) vibrational spectroscopy to characterize the structural dynamics of photoactive LC materials using this diffraction-extracted methodology19.

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</table>

novel techniques for observing structural dynamics of photoresponsive liquid crystals

We discuss in this article the experimental measurements of the molecules in liquid crystal (LC) phase using the time-resolved infrared (IR) vibrational spectroscopy and time-resolved electron diffraction. Liquid crystal phase is an important state of matter that exists between the solid and liquid phases and it is common in natural systems as well as in organic electronics. Liquid crystals are orientationally ordered but loosely packed, and therefore, the internal conformations and alignments of the molecular components of LCs can be modified by external stimuli. Although advanced time-resolved diffraction techniques have revealed picosecond-scale molecular dynamics of single crystals and polycrystals, direct observations of packing structures and ultrafast dynamics of soft materials have been hampered by blurry diffraction patterns. Here, we report time-resolved IR vibrational spectroscopy and electron diffractometry to acquire ultrafast snapshots of a columnar LC material bearing a photoactive core moiety. Differential-detection analyses of the combination of time-resolved IR vibrational spectroscopy and electron diffraction are powerful tools for characterizing structures and photoinduced dynamics of soft materials.

We chose a saddle-shaped &#960;-COT skeleton43,44 as a photoactive core unit of the LC molecule, because it forms a well-defined columnar stacking structure and because the central eight-membered COT ring is expected to show a photoinduced conformational change into a flat form owing to the excited-state aromaticity19,45. Synthetic process of this material is provided in p...

Watch this Scientific Journal Video about Novel Techniques for Observing Structural Dynamics of Photoresponsive Liquid Crystals at JoVE.com

Novel Techniques for Observing Structural Dynamics of Photoresponsive Liquid Crystals

Here, we present the protocols of differential-detection analyses of time-resolved infrared vibrational spectroscopy and electron diffraction which enable observations of the deformations of local structures around photoexcited molecules in a columnar liquid crystal, giving an atomic perspective on the relationship between the structure and the dynamics of this photoactive material.

We discuss in this article the experimental measurements of the molecules in liquid crystal (LC) phase using the time-resolved infrared (IR) vibrational ...

This method can help address a common problem in the liquid crystal research. Which is that peak molecular motion during the photoresponse cannot be determined by conventional methods. The main advantage of these techniques is that the structure and the ultrafast dynamics of photoexcited liquid crystal are obtained both from differential IR spectrum and differential electron diffraction patterns.I will be demonstrating the time-resolved IR vibration spectroscopy. To prepare a solution phase sample for time-resolved IR vibrational spectroscopy, dissolve 0.025 millimoles of pi-COT in 25 milliliters of dichloromethane, to obtain a 1 millimole per liter solution. To prepare a liquid crystal phase sample, cover a 3 millimeter thick calcium fluoride substrate in pi-COT powder.Place the substrate on a hot plate, and melt the powder at 100 degrees Celsius. Turn off the hot plate, and allow the sample to cool to room temperature. After preparing the sample, turn on the titanium-sapphire laser and the chirped pulse amplifier and allow them to thermally stabilize.Set the pulse duration to 120 femtoseconds, the repetition rate to 500 Hertz, and the incident fluence to 1 millijoule per square centimeter. Check the power and stability of the UV pump, and mid-IR probe pulses, and realign the optical paths as needed. Cool the mercury-cadmium-tellurium IR detector with liquid nitrogen.Position the spectrometer in line with the optical path and calibrate the spectrometer. Then, mount a 1 millimeter thick silicone wafer on the sample holder as a test sample. Set the pump-probe delay to a positive value.Optimize the pump-probe overlap by adjusting the mirror directing the pump beam to the sample, to obtain the maximal transient signal intensity. Set up a scan, starting at minus 100 picoseconds and ending at 1000 picosends, with a step time of 5 picoseconds. Scan the test sample, and identify the temporal position where the transient signal starts to emerge or time zero.Then, if using a solution phase sample, mount a flow cell with barium fluoride windows in the instrument and begin pumping the sample through the flow cell. If using a liquid crystal phase sample, mount the sample on a motorized stage to allow continuous movement of the laser spot position on the sample, to minimize laser induced damage. Confirm the time zero temporal position with the sample, and set the start, end and step times.Select a directory for the data file, and run the data acquisition process. First, etch and clean a silicone nitride coated wafer, to obtain a substrate with silicone nitride windows. Place the substrate on a spin coater chuck with the silicone nitride windows facing up.Spin coat the substrate with a 10 milligram per milliliter solution of pi-COT in chloroform. Place the spin coated substrate on a hot plate, and heat the hot plate to 100 degrees Celsius to melt the pi-COT. Turn off the hot plate when it reaches 100 degrees Celsius and let the sample cool in place, to obtain a pi-COT liquid crystal film.To begin the measurement, mount the sample on the instrument sample holder. Place the sample holder in the vacuum chamber and close the chamber. Use a rotary pump to evacuate the chamber to less than 1000 pascals or 10 millibars.Then, use a turbomolecular pump to evacuate the electron gun chamber to about 10 to the minus 6 pascals. Next, turn on the titanium-sapphire laser, and the chirped pulse amplifier, and allow them to thermally stabilize for one hour. Set the repetition rate to 500 hertz.Turn on the CCD camera chiller, and cool the device to 10 degrees Celsius. Then, turn on the electrical power supply, and set the voltage to 75 kilovolts. Open the special overlap software, and set the exposure time to 50 milliseconds.To find the probe electron beam position, first set the start type to z-overlap, and click start. When that process finishes, select y-overlap and click start again. Then, set the electron beam to the sample holder pinhole position, and align the pump laser with the reflected pump light by the pinhole.Next, switch to the time-resolved electron diffraction program. Set the start type to time-resolved and the pump influence to 2 millijoules per square centimeter. Click start to measure the time zero position based on an inorganic standard material fixed on the sample holder.Then, insert the Faraday cup into the electron beam path and measure the fluence with the picoammeter. Rotate the neutral density filter to adjust the electron beam fluence to 3 picoamperes. Adjust the pump pulse fluence to 1.67 milliwatts by rotating the wave plate on the pump beam line.Then, in the time-resolved electron diffraction software, move to the sample position. Set the CCD camera exposure time to 1 second. Set the start type to single, and click start to obtain a static electron diffraction image.Then, turn on the Peltier element of the CCD camera and cool the device to minus 20 degrees Celsius. Once the CCD camera has cooled, set the number of patterns to collect at each step, and the number of steps for the time-resolved measurements. Set the start type to time-resolved, and click start to collect the time-resolved electron diffraction images.When the experiment has finished, turn off the electron acceleration power supply. Collect the time-resolved image in the same way to obtain a background. The differential IR vibrational spectrum of a pi-COT based liquid crystal thin film had peaks corresponding to the stretching modes of the COT and thiazole rings, and of the biphenyl moyades, which are strongly IR active in the flat T1 form of pi-COT.The time-dependent evolution of the peak intensity had a wave number of 1338 reciprocal centimeters. It's consistent with the saddle to flat confirmational change within 2 picoseconds. Followed by relaxation to the initial saddle form in 10 to 20 picoseconds for single molecules, or 150 picoseconds for stacked molecules.The electron diffraction peaks from the photoresponsive moyades were extracted from the long pattern dominated by long carbon chains, by subtracting the initial diffraction pattern from a pattern obtained 500 picoseconds after UV pulse radiation. The positive and negative peaks indicated the formation and loss, respectively, of structural features by 500 picoseconds after irradiation. Th formation of a new ordered structure began about 200 picoseconds after photoexcitation, consistent with the relaxation to the initial saddle form in stacked molecules.The loss of the pi-pi stacking order on a 300 picoseconds timescale, was attributed to a small number of flat conformers, with 300 to 1000 picoseconds lifetimes, twisting to minimize steric hindrance. We first had the idea for this method when we discussed liquid crystals, which are not usually examined by times of diffraction because they do not provide good electron diffraction patterns. Our methodology allows changes in liquid crystal diffraction patterns to be identified, allowing access to important structure information and ultrafast molecule dynamics.Once mastered, these techniques can be done in a half day if they are performed properly. These techniques can potentially be used to answer further questions about the structure and ultrafast dynamics of more complex biomaterials.

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Research

JoVE Journal

Chemistry

8.6K Views.  Okayama University. This method can help address a common problem in the liquid crystal research. Which is that peak molecular motion during the photoresponse cannot be determined by conventional methods. The main advantage of these techniques is that the structure and the ultrafast dynamics of photoexcited liquid crystal are obtained both from differential IR spectrum and differential electron diffraction patterns.I will be demonstrating the time-resolved IR vibration spectroscopy. To prepare a solution ...