Great thanks to Prof Klaus-Armin Narve and Dr. Sandra Goebbels (Max-Plank-Institute of Experimental Medicine, Goettingen, Germany) for kindly providing Nex-Cre mice. Also, we thank our video-team Yunus Dikici and Ruben Wiesner for recording and processing of the JoVE video for this article. In addition, great thanks to Kristin Claussen for her voice-over and Kimberly Anne Go for proofreading of the manuscript.
The presented results were obtained at the Ruhr-University in Bochum and the video was recorded at the University of Bremen.
This work was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) - Projektnummer 122679504 - SFB 874 and DFG MA 4692/3-2.

The authors have nothing to disclose.

Using light to manipulate neuronal signaling has been the method of choice for nearly one decade now. Since 2005, the number of published articles about the development of new optogenetic tools4,6,8,14,49,50,51 and studies where such tools are utilized to investigate brain circuits21,23,40,43,52, highly increased. On one hand, with the enormous diversity of injectable optogenetic tools, implantation variants, transgenic mouse lines and behavioral experiments, the possibility for experiments is manifold and unlimited. On the other hand, the possibility to make faults in choosing experimental conditions is very high and the experiments are so specific, that often the comparability to other studies is difficult.
Critical steps 
One important critical step of this protocol is proper planning. The choice of the optogenetic tool should match the scientific question. Is it only necessary to manipulate the overall activity of a neuron or synapse? Then commercially provided tools like ChR221,25,27 and Arch37 are a good choice. But apart from that, if one special neurotransmitter system or even a single receptor should be manipulated, an individual receptor chimera is often the better choice3,6. Several receptor chimeras with GPCRs, the so called Opto-XRs, and guidelines to produce them are already available4,50. Other than the choice of optogenetic tools, the mouse line in combination with the behavioral experiment is also critical. Different background strains, like for example C57Bl/6 and BALB/cByJ, display different behavioral phenotypes in some respects53,54. C57Bl/6 mice have a low baseline anxiety and can be used for anxiogenic manipulation, whereas BALB/cByJ show higher anxiety levels and are therefore more sensitive to anxiolytic drugs. Additionally, the transgenic variants of these background strains may also vary in their phenotype48. With a proper combination of specific promoters in conjunction with an optogenetic tool and transgenic mouse line, nearly every desired cell population can be targeted.
A critical step during surgery is targeting the correct location. With the help of the mouse brain atlas, proper coordinates for the anterior-posterior axis, and medial-lateral axis, and depth of the structure can be established45. In reality, every skull has a slightly different form and size. Thus, the F-factor46 to adjust the stereotactic coordinates is quite important, as is the correct nose and ear fixation during stereotactic surgery. If the head of the mouse is tilted, the injection canula will fail to target the desired region of interest.
Additionally, the diameter of the injection canula is also critical. If it is too small, no virus can be released into the tissue, if it is too wide, the canula will leak virus solution on its way to the region of interest. If the implanted optical fiber terminates directly above the target region, the virus expression in the cortex regions above does not matter. But if the implant is placed above other regions to stimulate axon terminals, the axons of upper cortex regions will also be activated by light and falsify obtained data. As an example: The IL region and the prelimbic (PrL) region both project to the basal amygdala55,56 but have completely different functions and roles in the modulation of anxiety26,57. If the implant is placed above the amygdala to activate axon terminals from the IL region, and during the injection virus solution was also placed into the PrL due to the wrong injection canula, the risk of also activating axon terminals from the PrL is very high.
During the preparation of the skull for the fixation of the implant, the sparse usage of primer and bond is crucial for a reliable and durable fixation. If the 2-component adhesion system is not applied thinly, the dental cement might detach from the skull after a couple of days or weeks. In addition, the skull also has to be completely dried before fixing the implant, as otherwise the cement will not attach properly to the skull.
Critical steps also exist in the behavioral part of this protocol. First, the construction of the maze is very important. In every behavioral setup, several variants exist in the literature regarding size and form, as well as for the procedure itself58,59,60. It is important to choose a variant that makes the data comparable and reproducible. Also, special requirements for utilized mouse lines should be taken into account43,48. In the representative data for the EPM it can be seen that several Nex-Cre mice fell from the maze or slipped off several times (Figure 2b). For these mice, a maze with a small wall around the open arms would have been a better alternative.
Second, it is critical to keep all external room conditions constant61, otherwise different groups of mice would not be comparable at all. In this regard, it is very important to choose the time of the experiment as one where the experimental setup is vacant and the experimenter is always present. Furthermore, events in the building, such as construction work, testing of any systems (fire alarm) or the cleaning day of the mouse facility, should be considered in order to avoid interference with the obtained data.
Finally, handling and housing conditions are critical for behavioral experiments. When an implantation is performed, mice need to be single housed because of the risk of injury from other mice. To ensure good comparability between groups and a low error within one group, every mouse needs to have the same cage size and enrichment. For anxiety-related experiments, single housing has some advantages as singe housed male mice show a lower baseline anxiety level, less variation in their anxiety level, and less depressive-like symptoms15,16. Group housed male mice might strongly differ in their anxiety level because of hierarchy among the mice. Besides the housing, a constant and equal handling of all mice and groups is also important. Grabbing the mouse in order to connect the light fiber on the implant is very stressful. Therefore, this procedure has to be the same for every mouse, meaning the same technique and the same experimenter. Furthermore, the habituation time in the waiting cage, which is meant to calm the mouse down from the stressful connecting procedure, also needs to have equal conditions in duration, litter and position to the maze. The handling within the mouse facility is also critical for later behavioral performance. Experimental and control animals should not be cleaned on different days or by different people, as this is also stressful for mice. Additionally, the cleaning day should not be the experimental day to avoid differences in behavior.
Troubleshooting 
There are several problems which might occur during the protocol. For example, drilling a whole in the skull during the stereotactic surgery could damage blood vessels. Usually, strong bleeding occurs, especially above bregma and lambda. If this happens, do not try to stop the bleeding with cotton sticks as they tend to extend even more bleeding out of the vessel because of their absorbency, instead, directly rinse with NaCl.
It can also happen that the pressure injection of the virus solution is not working. In this case, it could be that parafilm, a scab from the burr hole or brain tissue, is clogging the tip of the canula. In this case, remove the canula slowly out of the brain without changing the x- or y-axis and use a tweezer to remove 1-2 mm of the front part of the canula tip. Before lowering the canula again, test for functionality by applying small amount of pressure to see if virus comes out of the canula tip. To avoid constipation, lower the canula with a constant speed and do not stop the movement until the deepest depth of the injection side is reached. If too much of the canula tip is removed and the diameter is too large, the canula will damage tissue and the risk of applying the virus all at once will be increased. Thus, make sure that only the clogged part of the tip is carefully removed.
During the behavioral experiment, the setup of the experiment in the video tracking software (e.g., Ethovision XT) might cause problems. If, for example, the light output is not working properly, this can be due to several reasons. The Pulser has to be opened, programmed and started before Ethovision XT is opened. The hardware needs to be selected correctly in the &#8220;Experimental setup&#8221; (step 3.2.2.4). If the wrong IO-Box, or anything other than &#8220;Costume Hardware&#8221; is selected, the Pulser device cannot be controlled by Ethovision. If the test of the light output is successful, but the programmed light protocol in &#8220;Trial control settings&#8221; does not work during acquisition, the sub-rule or sub-rule reference might be located incorrectly or the conditions and actions are unclear. For example: does the reference belong to the correct sub-rule? Is the reference programmed correctly (e.g., how often is the sub-rule executed)?
Additionally, it might happen that during &#8220;detection settings&#8221; the animal is adequately tracked, but during acquisition there are samples where the subject is not found. In this case, check if the illumination in the experimental room was changed, or if anything produced unwanted shadows within the maze. The entire bottom of the maze has to have the same color, as the setting will only work for one specific combination. If for whatever reasons different bottom colors or shadows can not be avoided, define the detection setting in the darkest part of the maze.
To change any settings after the acquisition of the first animals, do not apply these changes in the already used settings. Duplicate them to adjust them. This also means that the already recorded trial is not valid anymore for data analysis. In such a case, record all animals for this experimental group with the original settings, and create a new experiment afterwards where the recorded videos are analyzed instead of live tracking. In this &#8220;from video&#8221; experiment, several settings can be used for analysis without losing comparability between animals or even data.
Limitations and future applications 
This method of manipulating behavior with optogenetics in freely moving animals also includes limitations. During the surgery, the proximity of the two implants is restricted. For double implantation, the distance between the two implants must minimally be the width of the apparatus to hold the implant. The apparatus needs to lower the second implant into the burr hole, while the first implants is already fixed. A solution for this might be an angled implantation, where the tips of the glass fiber can be very close while the ceramic ferules above the skull have larger distance23,55,56,57,62,63. A disadvantage of an angled implantation is the light spreading. When the fiber tip is slanted instead of from straight above, the stimulated area is different. In case of two target regions in close proximity, the changed position of the light stimulation needs to be considered.
During the behavioral experiment, the construction of the maze might interfere with the optical cable connected to the animal. Some behavioral tests, such as the light-dark box, contain an indoor area64,65, and other mazes contain compartments which the mouse needs to enter. Such experiments cannot be performed with this setup. Alternatively, a wireless system might be an option22,26,66. But luckily some mazes, such as the Barnes Maze, can be arranged in such a way, that the mice are able to enter the relevant compartments67.
Besides those with closed zones, mazes that are too wide can cause also problems. The larger the area of the maze, the longer the cable has to be to allow the animal to go to every position in the maze. Care has to be taken that the animal is not able to step on the cable or grab it and bite it. A solution for that might be a construction that rolls up the redundant cable. A disadvantage is that the drag to unroll the cable is hard for mice. This solution would better suit suited for rats. Another possible option could be to do the light stimulation in advance, instead of during the experiment, of course this is only feasible if a long-term effect due to the light stimulation occurs23.
Comparison to existing/alternative methods 
Alternative methods would be chemical or electrical stimulation during behavior8,18. Chemical agonists or antagonists are able to activate or silence neurons via specific receptors and can also manipulate single neurotransmitter systems38,68. On one hand, the receptor-specificity is quite high for chemicals, because specific agonist or antagonist only activate certain receptors39. On the other hand, the specificity for receptor subtypes of the same neurotransmitter group is often insufficient. Most chemicals bind to at least two sub-types with different probabilities69. Additionally, chemicals cannot distinguish between neuronal cell types as long as they possess the same receptor types. Beyond this, temporal and spatial resolution is poor for chemical manipulations in comparison to optogenetics. Agonists or antagonists are often administered orally35 or via systemic injections57,70. If the infusion of the chemical is done directly in the brain tissue, effects appears faster than with oral applications, but still on a slower timescale than with light stimulation. As the administered chemicals diffuse in the brain and are not specific for neuronal types or brain regions, manipulation of specific brain circuitries it not possible.
Electrical stimulation has a higher temporal resolution than chemical stimulation9,14. The spread within in neuronal tissue is less than with chemical stimulation and the spatial resolution is better than with chemical stimulation. However, electrical stimulation lacks the possibility to specifically address different neuronal cell types or receptor types, as every neuron in proximity to the electrode will respond to the electrical stimulation.
Alternative methods to the behavior in freely moving mice are for example electrophysiological recordings in brain slices, where single neurons or axons can be modulated with optogenetics and elicited effects can be measured via recording electrodes6,71. In vitro experiments offer the possibility to investigate the molecular and cellular basis of optogenetic stimulations but have the limitation that intrinsic connectivity and input from other brain regions is missing. Another option is to use optogenetic in conjunction with multiphoton imaging1,72. In this case, mice have their head fixed and can be anesthetized or be awake to solve simple tasks.
To perform a successful optogenetic experiment, a wide range of tools and applications are available nowadays. The selection of optogenetic tools and the behavioral set-up is critical to answer specific research questions. If the right combination of tools and experiments is chosen, optogenetics allows an unprecedented, in-depth investigation of neuronal circuitries with high temporal and spatial resolution. This will help to understand and develop new therapeutic strategies for psychiatric diseases and cognition.

The modulation of neuronal circuits in the central nervous system and their behavioral outcomes are important for understanding how the brain works, especially in psychiatric diseases and cognitive tasks such as learning and memory. With optogenetics, single cells or cell populations up to whole circuitries can be modulated by light. Common optogenetic tools like Channelrhodopsin2 (ChR2) or Archaerhodopsin (Arch) are able to activate or silence neurons, or increase or inhibit transmitter release at axon terminals projecting to distinct brain regions1,2,3,4. However, Arch needs to be used carefully as it was shown that its activation at presynaptic terminals increases spontaneous transmitter release5. Arch is an outward rectifying proton pump that changes the pH value inside the cell. This alkaline milieu induces calcium influx and enhances transmitter release5. To specifically modulate intracellular signaling pathways, receptor chimeras composed of a light activatable optogenetic tool, such as rhodopsin or cone opsin, in conjunction with an adequate G-protein coupled receptor, can be created6,7,8. The amount and variation of optogenetic tools available has increased significantly during the last decade9.
The purpose of optogenetics is to manipulate neuronal circuitries during behavior. Optogenetics enables, for example, the measurement of acute behavioral changes such as changes in anxiety behavior. Optogenetic tools are delivered into target regions of the brain via viral vectors. With the help of special promoters and enhancers, or the Cre-loxP system, cell type specificity can be ensured for the expression of optogenetic tools (Figure 1A). There are several genetically modified mouse lines expressing the enzyme Cre-Recombinase in specific cell types only. For example, Nex-Cre mice express the Cre-Recombinase in pyramidal neurons in the cortex and the hippocampus under the control of the Nex-promotor10. This enzyme is able to invert DNA-sequences, which are flanked by loxP sides11. Consequently, the DNA-sequence of a double-floxed optogenetic tool, which is inverted and flanked by loxP sides, can only be transcribed by neurons that possess the Cre-Recombinase, but not by other neuronal types12,13. In the case of Nex-Cre mice, the optogenetic tool will be solely expressed in pyramidal neurons. Light stimulation of certain brain regions is then achieved via chronic implantation of optical fibers directly above the region of interest. Animals can then be coupled to a suitable light source and freely behave in nearly all kinds of behavioral tests.
<img alt="Figure 1" class="xfigimg" src="/files/ftp_upload/61023/61023fig01.jpg" /> 
Figure 1: Injection and implantation.&#160;A) Cre-loxP system for ChR2-YFP. Double floxed optogenetic tool is packed in an adeno associated virus (AAV) for injection into the brain tissue. B) Sagittal view of the virus injection and implantation of an optical neuronal interface into/above the IL region of the mPFC. Injection and implantation were done from above. All regions of interest, IL, BLA and DRN, are shown. C) Detailed view of the implanted optical fiber, sleeve and light source. D) Spreading of blue and red laser light stimulation in grey matter brain tissue from a 200 &#181;m light fiber (Yizhar et al. 2011). Blue light spreads, at maximum, 0.5 mm into the tissue, red light about 1 mm. Color coding: red 50%, yellow 10%, green 5%, blue 1% if light reaches this area. E) Coronal view of the unilateral implantation directly above the left IL with a 200 &#181;m optical fiber. The IL region has a width of 0.25 mm in each hemisphere and a depth of 0.2 mm. Blue and red light bulbs are the boarder of 5% light spreading and are transferred from Yizhar et al to the right size. LoxP: locus of X-over P1; ChR2: Channelrhodopsin; YFP: yellow fluorescent protein; dflox: double floxed; IL: infralimbic cortex; BLA: basolateral amygdala; DRN: dorsal raphe nuclei; PrL: prelimbic region. This figure has been modified from Berg 201948. <a href="https://www.jove.com/files/ftp_upload/61023/61023fig01large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
Optogenetic approaches are utilized as it enables both high temporal and spatial resolution14 and cell type specific modulation. Additionally, it is possible to repetitively use the implanted device without further treatment. After a stereotactic surgery, where the injection of an adeno-associated virus carrying the optogenetic tool and the implantation of the optical fiber is performed, mice can recover for two weeks. We have chosen a recovery time of only 2 weeks, because this is enough time to recover from the surgery and for the virus to express. As the behavioral experiments are followed by immunohistochemistry, we have to ensure that mice do not get too old during the experiment; otherwise the tissue quality is decreased. They show no obvious behavioral impairments from the implant and engage in typical cage behavior. Of course, the implantation is accompanied by a significant surgical lesion; therefore, the mice are monitored intensively. After the surgery, mice need to be single housed, as group housed mice tend to injure each other&#8217;s fresh wounds and implants. However, housing conditions have a great impact on the anxiety level of male mice, as single housed mice show lower anxiety levels15 and in general less depressive-like symptoms16.
Chemical or electrical manipulation of brain circuitries lack the high cell type specificity of optogenetics and have a lower temporal and spatial resolution14,17,18. Depending on the experimental question, electrical or chemical stimulation can have different advantages. When passing fiber terminals in a specific region also need to be stimulated, electrical stimulation is the best method. Chemical stimulation is a good choice for when transmitter specific receptors in a whole region should be activated by agonists. Another great advantage of optogenetics compared to chemical or electrical stimulation is that endogenously, neurons are not sensitive to light, which avoids the occurrence of side effects19. Indeed, high light intensities might induce heating effects8,20, but due to proper control groups, the behavioral effects due to optogenetic manipulation can be eliminated.
Investigating rodent behavior, especially in regards to psychiatric diseases, has greatly improved with optogenetics in freely moving animals, as it enables the direct modulation of single receptors up to specific cell populations21 and circuitries22. The possibility to measure the acute effects of such modulations, as well as the long-term behavioral effects after a defined time23 or after chronic stimulation24, enables a wide flexibility of experimental designs and provides very detailed insights into brain circuitries. Light stimulation can be used to modulate neurons located at the injection site of the optogenetic tool. When both the injection and implantation address the same brain region, cell bodies and back projecting axons of principle neurons and interneurons in this region can be targeted3,6,8. However, the light fiber can also be implanted in a region different from the injected one. In this case, light stimulation can modulate transmitter release at axon terminals in projection areas of the injected region25,26,27.
In the study here, optogenetics is used in combination with experiments to analyze anxiety-related behavior. Anxiety-related psychiatric diseases affect more than one third of the world&#8217;s population28,29,30 and cause a high economic burden31. Those affected suffer from a feeling of arousal, tension and worry followed by avoidance behavior32,33. These chronically occurring negative emotions, which are mainly focused on future events34, strongly interfere with the daily life of patients. Common treatments like benzodiazepines or selective serotonin reuptake inhibitors (SSRIs) are only successful in some of the patients. A large amount of people do not respond to the treatment at all35, showing that the mechanism underlying such diseases is not yet fully understood. The medial prefrontal cortex (mPFC) is known to play an important role in the development and manifestation of anxiety21,25,27,36,37,38. Specifically, the overactivation of the infralimbic cortex (IL) region in the mPFC might be part of anxiety-related disorders39,40. The example experiment described here could help to understand how modulations in the IL region of the mPFC influence anxiety behavior. Additionally, the development of new therapeutic strategies for anxiety-related psychiatric diseases can also potentially be supported.
2-6 month old male Nex-Cre mice are used to express ChR2 specifically in pyramidal neurons within the IL region of the mPFC41. Nex-Cre mice have a C57Bl/6 background and express the enzyme Cre-recombinase specifically in pyramidal neurons. During a stereotactic surgery, double floxed ChR2-DNA is injected into the IL region via adeno associated viral vectors. The optical implant is placed directly above the region of interest (Figure 1B) and the implant is fixed with dental cement. Control animals receive an injection of double floxed tdTomato-DNA in the same region to mimic cell specific expression.
Animals are group-housed until the day of surgery and afterwards are single housed to avoid injuries from other mice. Mice are housed in individual ventilated cage (IVC) racks in TypI-L cages for single housed mice. The light-dark cycle follows a 12:12 h rhythm, the light phase starting at 10 AM. All behavioral experiments are performed in the dark phase, which resembles the active phase of rodents. Water and standard food pellets are available ad libitum. After two weeks of recovery, which ensures a sufficient expression of ChR2 in pyramidal neurons, mice are used for behavioral experiments.
The Open Field (OF) is a 50 cm x 50 cm squared maze with sandblasted 40 cm high walls. The ground is divided in 16 squares where the inner 4 represent the center. The measured behavior is: 1) time spent in the center, 2) number of center entries, and 3) total distance moved. During this experiment, there are 4 trials totaling 20 minutes. In trials 1 and 3, no light stimulation occurs, and in trials 2 and 4, a 20 Hz stimulation with 5 ms light pulse and 1 mW light intensity of 473 nm is performed (Figure 2A). In the later trials, habituation to the testing area was taken into account, but the use of sham-injected control animals indicate how habituation is expressed.
The Barnes Maze is an experiment for learning and memory. It is a circular platform that is 92 cm in diameter and contains 20 equidistant holes around the circumference. 19 of the holes are closed and under one hole an escape box is presented. For 4 consecutive days, mice have 4 training trials to learn the location of the escape box. On the 5th day, the escape box is removed, and mice are tested on how much time they need to find the correct hole. The measured behavior is: 1) Time until the escape box/correct hole is found, 2) Number of target visits and errors, and 3) Distance moved until in the escape box. The light stimulation in different groups is done either during acquisition or consolidation, which take place on the training days 1-4, or during retrieval on the testing day, which is day 5 (Figure 2D).
<img alt="Figure 2" class="xfigimg" src="/files/ftp_upload/61023/61023fig2v2.jpg" /> 
Figure 2: Behavioral experiments with optogenetic protocols.&#160;A) Schematic drawing of the Open Field experiment with the corresponding light stimulation protocol. C) Schematic drawing of the Elevated-Plus Maze experiment with the corresponding light stimulation protocol. D) Schematic drawing of the Barnes Maze experiment with the corresponding light stimulation protocol. EPM: Elevated-Plus Maze; OF: Open Field; BM: Barnes Maze Test. This figure has been modified from Berg 201948. <a href="https://www.jove.com/files/ftp_upload/61023/61023fig2v2large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
For optogenetic stimulation, the light intensity and frequency have to be adapted to the optogenetic tool and neuronal type that is under investigation. The lowest possible light intensity should be used in order to avoid damage to the tissue, as several studies have shown that there are possible heating effects due to strong light intensity8,20. For ChR2, a 20 Hz stimulation with a 5 ms light pulse is commonly used2. As ChR2 is quite light sensitive, 1 mW light intensity is sufficient. The light stimulation protocol alternates between light off and on trials to directly measure behavioral changes. The external room conditions for behavioral experiments should remain stable for the whole group of animals. Important conditions to consider are the noise (keep in mind that devices themselves might make noise), the smell (always clean the behavioral setups with ethanol), the light intensity, and the experimenter. The experimenter should always be the same person. Additionally, the time of day of the experiments should be the same for all animals in one group, a few hours after the start of the dark phase in the facility is preferred.
The goal of this experiment is to increase the excitation/inhibition (E/I) ratio in the IL region through strong activation of excitatory pyramidal neurons. An enhanced E/I ratio in this special cortex region is known to increase anxiety levels in mice40,42,43,44.

<table>
	<tbody>
		<tr>
			<td>Ketamin</td>
			<td>Sigma-Aldrich</td>
			<td>K2753-64</td>
			<td>Anestasia</td>
		</tr>
		<tr>
			<td>20 % Glucose</td>
			<td>AlleMan Pharma</td>
			<td></td>
			<td>Injection s.c. for fast recovery</td>
		</tr>
		<tr>
			<td>Behavioral mazes</td>
			<td>Costum made</td>
			<td></td>
			<td>Measure anxiety</td>
		</tr>
		<tr>
			<td>Bepanthen</td>
			<td>Bayer</td>
			<td></td>
			<td>Ophthalmic oinment</td>
		</tr>
		<tr>
			<td>Betaisodona</td>
			<td>Monodipharma</td>
			<td></td>
			<td>Sterilant containing iodine</td>
		</tr>
		<tr>
			<td>Betaisodona</td>
			<td>Monodipharma</td>
			<td></td>
			<td>Iodine oinment</td>
		</tr>
		<tr>
			<td>Binocular</td>
			<td>Olympus</td>
			<td>SZ52, 110AL0.62x WD160</td>
			<td>Surgery</td>
		</tr>
		<tr>
			<td>Ceramic ferrules</td>
			<td>Thorlabs</td>
			<td>CFLC230-10</td>
			<td>Implant</td>
		</tr>
		<tr>
			<td>Ceramic Fiber Scribe</td>
			<td>Thorlabs</td>
			<td>CSW12.5</td>
			<td>Cutting of the glass fiber</td>
		</tr>
		<tr>
			<td>Channelrhodopsin2-YFP virus</td>
			<td>Penn Vector Core</td>
			<td>Addgene 20298</td>
			<td>Optogenetic tool</td>
		</tr>
		<tr>
			<td>Compressed air</td>
			<td>Kontakt Chemie</td>
			<td>Druckluft 67</td>
			<td>Drying of the skull</td>
		</tr>
		<tr>
			<td>Coordinate system</td>
			<td>Stoelting</td>
			<td></td>
			<td>Stereotactic coordinates for the surgery</td>
		</tr>
		<tr>
			<td>Correl Draw</td>
			<td></td>
			<td></td>
			<td>Graphical software version 13</td>
		</tr>
		<tr>
			<td>Cryoslicer</td>
			<td>MICROM</td>
			<td>HM500OM</td>
			<td>Production of brain slices for staining</td>
		</tr>
		<tr>
			<td>Ethovision XT 14</td>
			<td>Noldus</td>
			<td></td>
			<td>Software for behavioral tracking</td>
		</tr>
		<tr>
			<td>Exel</td>
			<td></td>
			<td></td>
			<td>Statistical Software</td>
		</tr>
		<tr>
			<td>Ferrule Polishing Puck</td>
			<td>Thorlabs</td>
			<td>D50-F</td>
			<td>Polishing implants round side</td>
		</tr>
		<tr>
			<td>Fiber Patch Cord dual</td>
			<td>Prizmatix</td>
			<td>Optogenetics-Fiber 500, 1,20 m, Ferrule core 1,25 mm</td>
			<td>Cables, which are connected with the two implants of a bilateral implantation</td>
		</tr>
		<tr>
			<td>Fiber Patch Cord single</td>
			<td>Prizmatix</td>
			<td>Optogenetics-Fiber 500, 1,20 m, Ferrule core 1,25 mm</td>
			<td>Cable, which is connected with the implant via a sleeve</td>
		</tr>
		<tr>
			<td>Fiber Stripping Tool</td>
			<td>Thorlabs</td>
			<td>T06S13</td>
			<td>Stripping glass fiber for implant</td>
		</tr>
		<tr>
			<td>Filter paper</td>
			<td>VWR European</td>
			<td>516-0300</td>
			<td>Cut into pieces for the Novelty-Suppressed Feeding test</td>
		</tr>
		<tr>
			<td>Food pellets</td>
			<td>M&#252;hle Levers</td>
			<td>H&#246;veler Nagerfutter</td>
			<td>Nutrition for the mice</td>
		</tr>
		<tr>
			<td>Glass pipettes</td>
			<td>Harvard Apparatus</td>
			<td>GC150-10</td>
			<td>Injection pipettes</td>
		</tr>
		<tr>
			<td>Gradia direct-Flo</td>
			<td>Henry Schein</td>
			<td>103322</td>
			<td>Fluid dental cementum</td>
		</tr>
		<tr>
			<td>Heating lamp</td>
			<td>efbe-Schott/Phillips</td>
			<td>R95E</td>
			<td>Prevent the mice from cooling after the surgery</td>
		</tr>
		<tr>
			<td>Heating plate</td>
			<td>Stoelting</td>
			<td></td>
			<td>Integrated into coordinate system</td>
		</tr>
		<tr>
			<td>Injection canula</td>
			<td>Braun</td>
			<td>100 Sterican, 0,4 x 20 mm, Gr. 20</td>
			<td>All injections and to bore hole into the skull</td>
		</tr>
		<tr>
			<td>Litter</td>
			<td></td>
			<td>T 1350</td>
			<td>Grounding for the Novelty-Supressed Feeding test</td>
		</tr>
		<tr>
			<td>Mouse cages</td>
			<td>Zoonlab</td>
			<td>405 cm^2</td>
			<td>Single housing for experiments</td>
		</tr>
		<tr>
			<td>Optibond FL</td>
			<td>Kerr</td>
			<td>26684E</td>
			<td>Preparation of the skull for implantation</td>
		</tr>
		<tr>
			<td>Optical glass fiber</td>
			<td>Thorlabs</td>
			<td>FT200EMT</td>
			<td>Light fiber for implant</td>
		</tr>
		<tr>
			<td>Optogenetics-LED.STSI</td>
			<td>Prizmatix</td>
			<td></td>
			<td>Optogenetic toolbox for light stimulation during behavioral experiments</td>
		</tr>
		<tr>
			<td>Paraformaldehyde</td>
			<td>Sigma-Aldrich</td>
			<td>16005-1KG-R</td>
			<td>Perfusion of mice to remove the brains</td>
		</tr>
		<tr>
			<td>Polishing sheet 0.02 &#181;m grit</td>
			<td>Thorlabs</td>
			<td>LFCF</td>
			<td>Polishing implants round side</td>
		</tr>
		<tr>
			<td>Polishing sheet 1 &#181;m grit</td>
			<td>Thorlabs</td>
			<td>LF1D</td>
			<td>Polishing implants round side</td>
		</tr>
		<tr>
			<td>Polishing sheet 30 &#181;m grit</td>
			<td>Thorlabs</td>
			<td>LF30D</td>
			<td>Polishing implants round side</td>
		</tr>
		<tr>
			<td>Polishing sheet 6 &#181;m grit</td>
			<td>Thorlabs</td>
			<td>LF6D</td>
			<td>Polishing implants round side</td>
		</tr>
		<tr>
			<td>Pulser Software</td>
			<td>Prizmatix</td>
			<td></td>
			<td>Software for light device control</td>
		</tr>
		<tr>
			<td>Rimadyl-Carprofen</td>
			<td>Zoetis</td>
			<td></td>
			<td>Analgesia</td>
		</tr>
		<tr>
			<td>Sigma Plot</td>
			<td></td>
			<td></td>
			<td>Software for statistics</td>
		</tr>
		<tr>
			<td>Sleeve</td>
			<td>Thorlabs</td>
			<td>FT200EMT</td>
			<td>Connection of implant and light cable</td>
		</tr>
		<tr>
			<td>SodiumCloride (NaCl)</td>
			<td>Braun</td>
			<td>3570410</td>
			<td>Rinsing of the skull</td>
		</tr>
		<tr>
			<td>Superglue</td>
			<td>Pattex Henkel</td>
			<td></td>
			<td>To Fix the glass fiber in the ferrule</td>
		</tr>
		<tr>
			<td>td-Tomato virus</td>
			<td>Penn Vector Core</td>
			<td>Addgene 51503</td>
			<td>Optogenetic tool</td>
		</tr>
		<tr>
			<td>UV light</td>
			<td>KoQGHJ</td>
			<td>wireless, 1200 mW/cm^2</td>
			<td>Polymeration lamp for dental cementum</td>
		</tr>
		<tr>
			<td>Xylavet-Xylazin</td>
			<td>cp pharma</td>
			<td></td>
			<td>Anesthesia</td>
		</tr>
	</tbody>
</table>

optogenetic manipulation of neuronal activity to modulate behavior in freely moving mice

Optogenetic modulation of neuronal circuits in freely moving mice affects acute and long-term behavior. This method is able to perform manipulations of single neurons and region-specific transmitter release, up to whole neuronal circuitries in the central nervous system, and allows the direct measurement of behavioral outcomes. Neurons express optogenetic tools via an injection of viral vectors carrying the DNA of choice, such as Channelrhodopsin2 (ChR2). Light is brought into specific brain regions via chronic optical implants that terminate directly above the target region. After two weeks of recovery and proper tool-expression, mice can be repeatedly used for behavioral tests with optogenetic stimulation of the neurons of interest.
Optogenetic modulation has a high temporal and spatial resolution that can be accomplished with high cell specificity, compared to the commonly used methods such as chemical or electrical stimulation. The light does not harm neuronal tissue and can therefore be used for long-term experiments as well as for multiple behavioral experiments in one mouse. The possibilities of optogenetic tools are nearly unlimited and enable the activation or silencing of whole neurons, or even the manipulation of a specific receptor type by light.
The results of such behavioral experiments with integrated optogenetic stimulation directly visualizes changes in behavior caused by the manipulation. The behavior of the same animal without light stimulation as a baseline is a good control for induced changes. This allows a detailed overview of neuronal types or neurotransmitter systems involved in specific behaviors, such as anxiety. The plasticity of neuronal networks can also be investigated in great detail through long-term stimulation or behavioral observations after optical stimulation. Optogenetics will help to enlighten neuronal signaling in several kinds of neurological diseases.

The aim of this protocol is to measure changes in the behavior of genetically modified mice during an optogenetic experiment. Optogenetic manipulation is done by injection of an adeno associated viral vector. Light stimulation in freely moving mice is possible via implantation of a light fiber directly above the region of interest.
In Figure 4, the results of an optogenetic experiment are presented. A strong activation of excitatory pyramidal neurons in the IL region via ChR2 increased anxiety-related behavior in the Open Field. ChR2 was injected in the IL region of the mPFC in Nex-Cre mice for expression in pyramidal neurons (Figure 4A). During two anxiety tests, the Open Field (Figure 4B,C) and the Novelty-Suppressed Feeding test (Figure 4F,G), ChR2 is stimulated with blue light and activates pyramidal neurons. As control, another group of mice received an injection of the fluorophore tdTomato instead of ChR2 (Figure 4D,G). In such experiment, anxiety is defined as avoidance of the brighter central area. Mice show an intrinsic avoidance of open areas because they are anxious of predators.
In the Open Field experiment, shown in Figure 4B, mice executed 4 trials of 5 minutes each. In trials 1 and 3 no light stimulation occurred (Off1,2) and in trials 2 and 4, blue light stimulation with 20 Hz (5 ms light pulse) and 1 mW intensity was performed (On1,2). The heatmaps show that, in the experimental group, the center duration differed between Off and On trials. During light stimulation, mice preferentially stay in the border zone. Control animals also prefer the border, but do not change their behavior upon light stimulation. In Figure 4C, the main behavioral measurements during the Open Field experiment are shown for the experimental group. If the data passed the Shapiro-Wilk test for normality, statistics were done with an independent two-tailed t-test. If the normality test failed, the Mann-Whitney-Rank Sum test was used as non-parametric alternative. For these kinds of experiments, a within group comparison was chosen to investigate if light stimulation can directly change anxiety behavior over time, independent of the baseline anxiety of experimental and control animals. The center duration decreased significantly during both light stimulation trials, indicating increased anxiety levels. The total distance moved was not altered, showing that locomotor behavior was not affected. The number of center entries was increased, although not significantly. In Figure 4D, the data of the control group is shown. Control animals did not display any behavioral changes between Off and On trials in any of the analyzed parameters, showing that light stimulation or implantation did not cause the observed effects. In sum, this test shows increased anxiety during light stimulation of IL pyramidal neurons via ChR2.
In Figure 5, the data of an unsuccessful optogenetic experiment is shown for the Elevated-Plus Maze. During the Elevated-Plus Maze experiment, which is presented in Figure 5A, mice completed 6 trials of 3 minutes each. In trials 1, 3 and 5 no light stimulation was performed (Off1, Off2, Off3) and in trials 2, 4 and 6, blue light stimulation with 20 Hz (5 ms light pulse) and 1 mW intensity was performed (On1, On2, On3). In these exemplary results, the length of the optogenetic protocol and the construction of the maze itself were not suitable for the transgenic mouse line. In Figure 5B, it can be seen, that several mice slipped off the maze with their back paws or even fell down. When this happened, mice got a second chance to perform the EPM one day later. If they fell down again, they were excluded from analysis. When mice slipped off several times but managed to stay on the maze, data was analyzed normally. Nevertheless, the data has to be interpreted very carefully and control animals get greater importance. Nex-Cre mice had motor difficulties to stay on the narrow open arms. To avoid this, little walls, with a height of 1 cm, would have helped for a secure hold of the back paws on the arms of the maze. Both the heatmaps and the graphs show that experimental, as well as control mice, started to avoid the open arms from trial 2 (On1) on (Figure 5C-E). The time on the open arms is significantly decreased for both groups, as are the open arm entries. Analyzing the experimental group only obtained data implicating a large anxiogenic effect of the light stimulation, as time on the open arm and open arm entries are significantly decreased during the On1 trial. However, when comparing this data to the control group, which show the same behavior, it becomes clear that the observed behavior is not mediated by the optogenetic stimulation, but by avoidance of the open arms in general due to habituation to the maze. This data underlines the importance of a proper control group to distinguish between behavioral effects mediated by optogenetic stimulation and possible behavioral adaption. Also, this data sheds light on the importance of properly adapting an experimental setup to suit the specific mousse line and experimental question.
To validate and strengthen gathered behavioral data, brains of mice are removed after the last experiment to control for the correct injection and implantation (Figure 6). Brains are fixed in 4% paraformaldehyde and removed from the skull. Brains are dehydrated in 30% sucrose for 1-2 days and cryosliced afterwards. The 40 &#181;m thick coronal brain slices are washed and mounted on superfrost objective slides with a mounting medium containing DAPI, which stains cell nuclei. This enables the identification of target areas in the coronal slices. Fluorescence of the YFP-tag or tdTomato itself indicates the location of the virus injection. In Figure 6B the exemplary injection sites of ChR2-YFP on the left (yellow), and tdTomato on the right (red) are presented. With the help of a template, adapted from the Paxinos and Franklin45 mouse brain atlas, the IL region can be identified. In both slides, the optogenetic tool is expressed in the IL region, but also in adjacent brain regions. For a proper interpretation, the spreading of blue light in brain tissue is consulted8 (Figure 1D,E). It can be seen that the blue light will reach the DP region below the IL with only less than 5% of the initial 1 mW light intensity at the fiber tip (Blue line in Figure 1D)8. Additionally, small amount of light can go upward to the PrL region due to back-scattering47. Consequently one can say that the IL region is illuminated the most strongly, however adjacent regions like the DP and PrL region may also be slightly stimulated. Therefore, IL-cell specific stimulation is not guaranteed and immunohistochemical analysis of the adjacent regions should be performed, to see if the activity of PrL and DP cells is modulated via light. In Figure 6C, another important control is shown: the specificity of the Nex-Cre mouse line. Via antibody staining against the two cell types in the IL region, glutamatergic principle neurons and GABAergic interneurons, it can be seen, that the ChR2-YFP expression only occurs in glutamatergic neurons and not with GABAergic ones.
All in all, our experiments show that with optogenetic manipulation during behavioral testing, changes in anxiety-related behavior could be observed. By using more than one test for the same behavior, a reliable conclusion can be drawn. In addition, immunohistochemical analysis confirms the obtained data. Our experiments suggest, that the specific activation of pyramidal neurons in the infralimbic cortex increased anxiety-related behavior in certain assays.
<img alt="Figure 4" class="xfigimg" src="/files/ftp_upload/61023/61023fig04v4.jpg" /> 
Figure 4: Optogenetic activation of IL pyramidal neurons increases anxiety behavior.&#160;Light stimulation during experiments: 473 nm, 1 mW, 20 Hz stimulation. A) Schematic drawing of injection and implantation site for ChR2-YFP or tdTomato into the IL. During the experiment, pyramidal neurons in the IL region of the mPFC are activated by ChR2. Saggital brain slices adapted from the Paxinos and Franklin mouse brain atlas, saggital: lateral o,6. B) Open Field maze with light stimulation protocol (20 min with 4x5 min alternating Off and On trials; left) and heat maps of exemplary ChR2-injected(EXP) and tdTomato-injected (CT) mice in all 4 trials of the experiment (right). EXP animals spend less time in the center of the OF when stimulated with blue laser light. For CT animals, time spent in the center does not differ between light Off and On trials. C) Group data for EXP animals in the OF, n=11. Mice spend significantly less time in the center of the OF when stimulated with blue light (Off1 39.49&#177;6.9 s, On1 19.87&#177;4.47 s, Off2 28.13&#177;8.55 s, On2 23.42&#177;9.32 s, Off1:On1, t-test, p = 0.033, *; Off1:On2, MWRS, p=0,049, *). Distance moved is not affected (Off1 2703.09&#177;292.65 cm, On1 3113.4&#177;491.15 cm, Off2 3331.86 &#177;482.62 cm, On2 3082.17&#177;658,61 cm). # of center entries decrease with time, but show no significant differences (Off 1 22.36&#177;3.78, On1 18.45&#177;3.95, Off2 17.36&#177;1.99, On2 13.27&#177;2.64). D) Group data for CT animals in the OF, n=15. Time mice spend in the center of the OF, the distance moved, # of center entries does not change between light On and Off trials (Time in center Off116.73&#177;2.65 s, On1 16.02&#177;1.89 s, Off2 12.02&#177;1.76 s, On2 13.04&#177;2.58 s; Distance Off1 3399.69&#177;296.77 cm, On1 3210.6&#177;446.9 cm, Off2 3030.28&#177;513.83 cm, On2 2955&#177;617.7 cm; # of center entries Off1 14.2&#177;1.98, On1 13.6&#177;2.02, Off2 10.8&#177;1.88, On2 11.67&#177;2.5). CT mice show significantly higher baseline anxiety (Off1 EXP:CT, MWRS, p=0.005, **). Values are mean&#177;S.E.M. * indicate significant differences (p&#8804;0.05), ** indicate significant differences (p&#8804;0.01). t-test always two-tailed, MWRS: Mann-Whitney Rank Sum test; IL: infralimbic cortex; BLA: basolateral amygdala; DRN: dorsal raphe nuclei; OF: Open Field; CT: control animals; EXP: experimental animal; L: light. This figure has been modified from Berg et al. 2019, PLoS One43 and from Berg 201948. <a href="https://www.jove.com/files/ftp_upload/61023/61023fig04large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 5" class="xfigimg" src="/files/ftp_upload/61023/61023fig5v4.jpg" /> 
Figure 5: EPM experiment failed to show behavioral effects in Nex-Cre mice.&#160;Light stimulation during experiments: 473 nm, 1 mW, 20 Hz stimulation. A) Elevated-Plus Maze with light stimulation protocol (18 min, 6x3 min, alternating Off and On trials). B) Group data for the mice that &#8220;slip off&#8221; is included into the data, total n=23. Nex-Cre mice had a tendency to slip off of the open arm with their back paws, independent of the experimental group (left). Only mice that stayed on the maze for all 6 trials were considered in later analyses. Slip off&#8217;s in the first Off1 phase are reason for later avoidance of the open arms (Off1 EXP 1.63&#177;0.6, CT 2.2&#177;0.79, Off2+3 EXP 0.125&#177;0.125, CT 0&#177;0, On1+2+3 EXP 0.625&#177;0.26, CT 0.1&#177;0.1). Pie chart (right) shows mice falling from the maze during the 18 min with 42.42%. Only 57.57% finished the experiment. C) Heat maps of exemplary EXP and CT mice in all 6 trials of the experiment. Both groups show a decrease in open arm duration after the Off1 trial. D) Group data for EXP animals in the EPM, n=12. Time spent in the open arms decreased significantly during the first two trials and constantly afterwards (Off1 73.91&#177;12.22 s, On1 36.15&#177;14.65 s, Off2 15.61&#177;6.23 s, On2 19.49&#177;7.51 s, Off3 9.36&#177;4.44 s, On3 7.96&#177;3.47 s. Off1:On1, t-test, p=0,041, *). The distance moved is not affected (Off1 679.96&#177;71.63 cm, On1 712.24&#177;112.82 cm, Off2 717.49&#177;97.39 cm, On2 782.51&#177;81.11 cm, Off3 722.11&#177;68.60 cm, On3 663.90&#177;106.57 cm). The amount of open arm entries decreases significantly from Off1 to On1 and then stays constant (Off1 8.08&#177;1.08, On1 3.33&#177;0.76, Off2 2.16&#177;0.69, On2 2.91&#177;1.09, Off3 1.73&#177;0.75, On3 1.73&#177;0.66. Off1:On1, t-test, p=0.002, **). The time spent in the center of the EPM decreases along trials but shows no significant difference from Off to On trial (Off1 41.71&#177;5.34 s, On1 31.2&#177;4.59 s, Off2 19.8&#177;3.44 s, On2 24.49&#177;3.38 s, Off3 20.37&#177;4.77 s, On3 18.85&#177;4.07 s). E) Group data for CT animals in the EPM, n=11. CT data shows the same significant decreases as EXP data, indicating the experiment has not worked properly (Time in open arms Off1 86.92&#177;12.74 s, On1 33.78&#177;14.38 s, Off2 18.01&#177;11.61 s, On2 16.41&#177;9.61 s, Off3 11.36&#177;4.01 s, On3 5.43&#177;2.07 s. Off1:On1, MWRS, p=0.009, **; Distance Off1 705.11&#177;88.36 cm, On1 789.45&#177;77.53 cm, Off2 724.74&#177;80.49 cm, On2 676.57&#177;111.99 cm, Off3 716.99&#177;132.47 cm, On3 663.03&#177;132.46 cm; Open arm entries Off1 7.09&#177;1, On1 3.72&#177;1.17, Off2 1.45&#177;0.47, On2 1.36&#177;0.58, Off3 0.91&#177;0.43, Off3 1.64&#177;0.59. Off1:On1, MWRS, p=0.01, *; Time spend in the center Off1 35.89 s, On1 29.25&#177;3.96 s, Off2 22.17&#177;3.58 s, On2 15.9&#177;2.57 s, Off3 13.86&#177;4.2 s, On3 16.89&#177;5.75 s). Values are mean &#177; S.E.M. * indicate significant differences (p&#8804;0.05), ** indicate significant differences (p&#8804;0.01). t-test is always two-tailed, MWRS: Mann-Whitney Rank Sum test; EPM: Elevated-Plus Maze; CT: control animals; EXP: experimental animal; OA: open arms. This figure has been modified from Berg et al. 2019, PLoS One43 and from Berg 201948. <a href="https://www.jove.com/files/ftp_upload/61023/61023fig05large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Figure 6" class="xfigimg" src="/files/ftp_upload/61023/61023fig06.jpg" /> 
Figure 6: Injection side of ChR2 and tdTomato in the IL and Nex-Cre specificity.&#160;A) Schematic drawing of the implantation site on coronal brain slices at AP + 1.66 mm, mL 0.3 mm, DV -1.8 mm, with unilateral injection and implantation (adapted from mouse brain atlas, Paxinos and Franklin, Bregma +1.54 mm). B) Exemplary injection sites of ChR2-YFP (left, yellow) and tdTomato (right, red) merged with DAPI stained cell nuclei (blue) in Nex-Cre mice. Scale bar 1 mm. Insets show high magnification of IL region. Scale bar 150 &#181;m. White boxes indicate location of insets. C) Top row: confocal images of the left IL region of a Nex-Cre mouse stained with CamKII as a marker for glutamatergic neurons (blue), and ChR2-YFP (yellow) or Gad67 as a marker for GABAergic neurons (green), of a Nex-Cre mouse. Bottom row: colocalization of ChR2-YFP (yellow) with CamKII (left, blue), but not with Gad67 (right, green), showing specificity of Nex-Cre mice for glutamatergic neurons. Scale bar 50 &#181;m. PrL: prelimbic cortex; IL: infralimbic cortex; DP: dorsal peduncular cortex. This figure has been modified from Berg et al. 2019, PLoS One43 and from Berg 201948. <a href="https://www.jove.com/files/ftp_upload/61023/61023fig06large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>

Watch this Scientific Journal Video about Optogenetic Manipulation of Neuronal Activity to Modulate Behavior in Freely Moving Mice at JoVE.com

Optogenetic Manipulation of Neuronal Activity to Modulate Behavior in Freely Moving Mice

With optogenetic manipulation of specific neuronal populations or brain regions, behavior can be modified with high temporal and spatial resolution in freely moving animals. By using different optogenetic tools in combination with chronically implanted optical fibers, a variety of neuronal modulations and behavioral testing can be performed.

Optogenetic modulation of neuronal circuits in freely moving mice affects acute and long-term behavior. This method is able to perform manipulations of ...

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17.5K Views.  University of Bremen. With optogenetic manipulation of specific neuronal populations or brain regions, behavior can be modified with high temporal and spatial resolution in freely moving animals. By using different optogenetic tools in combination with chronically implanted optical fibers, a variety of neuronal modulations and behavioral testing can be performed.

Video: Optogenetic Manipulation of Neuronal Activity to Modulate Behavior in Freely Moving Mice

Long-term Potentiation of Perforant Pathway-dentate Gyrus Synapse in Freely Behaving Mice

Studies of long-term potentiation of synaptic efficacy, an activity-dependent synaptic phenomenon having properties that make it attractive as a potential cellular mechanism underlying learning and information storage, have long been used to elucidate the physiology of various neuronal circuits in the hippocampus, amygdala, and other limbic and cortical structures. With this in mind, transgenic mouse models of neurological diseases represent useful platforms to conduct long-term&#160;potentiation (LTP) studies to develop a greater understanding of the role of genes in normal and abnormal synaptic communication in neuronal networks involved in learning, emotion and information processing. This article describes methodologies for reliably inducing LTP in the freely behaving mouse. These methodologies can be used in studies of transgenic and knockout freely&#160;behaving mouse models of neurodegenerative diseases.

Transgenic and knockout mouse models of neurological diseases are useful for studying the role of genes in normal and abnormal neurophysiology. This article describes methodologies which can be used to study long-term potentiation, a cellular mechanism which may underlie learning and memory, in transgenic and knockout freely&#160;behaving mouse models of neuropathology.

Studies of long-term potentiation of synaptic efficacy, an activity-dependent synaptic phenomenon having properties that make it attractive as a potential ...

Uncovering Beat Deafness: Detecting Rhythm Disorders with Synchronized Finger Tapping and Perceptual Timing Tasks

A set of behavioral tasks for assessing perceptual and sensorimotor timing abilities in the general population (i.e., non-musicians) is presented here with the goal of uncovering rhythm disorders, such as beat deafness. Beat deafness is characterized by poor performance in perceiving durations in auditory rhythmic patterns or poor synchronization of movement with auditory rhythms (e.g., with musical beats). These tasks include the synchronization of finger tapping to the beat of simple and complex auditory stimuli and the detection of rhythmic irregularities (anisochrony detection task) embedded in the same stimuli. These tests, which are easy to administer, include an assessment of both perceptual and sensorimotor timing abilities under different conditions (e.g., beat rates and types of auditory material) and are based on the same auditory stimuli, ranging from a simple metronome to a complex musical excerpt. The analysis of synchronized tapping data is performed with circular statistics, which provide reliable measures of synchronization accuracy (e.g., the difference between the timing of the taps and the timing of the pacing stimuli) and consistency. Circular statistics on tapping data are particularly well-suited for detecting individual differences in the general population. Synchronized tapping and anisochrony detection are sensitive measures for identifying profiles of rhythm disorders and have been used with success to uncover cases of poor synchronization with spared perceptual timing. This systematic assessment of perceptual and sensorimotor timing can be extended to populations of patients with brain damage, neurodegenerative diseases (e.g., Parkinson&#8217;s disease), and developmental disorders (e.g., Attention Deficit Hyperactivity Disorder).

Behavioral tasks that allow for the assessment of perceptual and sensorimotor timing abilities in the general population (i.e., non-musicians) are presented. Synchronization of finger tapping to the beat of an auditory stimuli and detecting rhythmic irregularities provides a means of uncovering rhythm disorders.

A set of behavioral tasks for assessing perceptual and sensorimotor timing abilities in the general population (i.e., non-musicians) is presented here ...

Flat-floored Air-lifted Platform: A New Method for Combining Behavior with Microscopy or Electrophysiology on Awake Freely Moving Rodents

It is widely acknowledged that the use of general anesthetics can undermine the relevance of electrophysiological or microscopical data obtained from a living animal&#8217;s brain. Moreover, the lengthy recovery from anesthesia limits the frequency of repeated recording/imaging episodes in longitudinal studies. Hence, new methods that would allow stable recordings from non-anesthetized behaving mice are expected to advance the fields of cellular and cognitive neurosciences. Existing solutions range from mere physical restraint to more sophisticated approaches, such as linear and spherical treadmills used in combination with computer-generated virtual reality. Here, a novel method is described where a head-fixed mouse can move around an air-lifted mobile homecage and explore its environment under stress-free conditions. This method allows researchers to perform behavioral tests (e.g., learning, habituation or novel object recognition) simultaneously with two-photon microscopic imaging and/or patch-clamp recordings, all combined in a single experiment. This video-article describes the use of the awake animal head fixation device (mobile homecage), demonstrates the procedures of animal habituation, and exemplifies a number of possible applications of the method.

This method creates a tangible, familiar environment for the mouse to navigate and explore during microscopic imaging or single-cell electrophysiological recordings, which require firm fixation of the animal&#8217;s head.

It is widely acknowledged that the use of general anesthetics can undermine the relevance of electrophysiological or microscopical data obtained from a ...

A Novel Experimental and Analytical Approach to the Multimodal Neural Decoding of Intent During Social Interaction in Freely-behaving Human Infants

Understanding typical and atypical development remains one of the fundamental questions in developmental human neuroscience. Traditionally, experimental paradigms and analysis tools have been limited to constrained laboratory tasks and contexts due to technical limitations imposed by the available set of measuring and analysis techniques and the age of the subjects. These limitations severely limit the study of developmental neural dynamics and associated neural networks engaged in cognition, perception and action in infants performing &#8220;in action and in context&#8221;. This protocol presents a novel approach to study infants and young children as they freely organize their own behavior, and its consequences in a complex, partly unpredictable and highly dynamic environment. The proposed methodology integrates synchronized high-density active scalp electroencephalography (EEG), inertial measurement units (IMUs), video recording and behavioral analysis to capture brain activity and movement non-invasively in freely-behaving infants. This setup allows for the study of neural network dynamics in the developing brain, in action and context, as these networks are recruited during goal-oriented, exploration and social interaction tasks.

This protocol presents a novel methodology for the neural decoding of intent from freely-behaving infants during unscripted social interaction with an actor. Neural activity is acquired using non-invasive high-density active scalp electroencephalography (EEG). Kinematic data is collected with inertial measurement units and supplemented with synchronized video recording.

Understanding typical and atypical development remains one of the fundamental questions in developmental human neuroscience. Traditionally, experimental ...

Visualizing Motion Patterns in Acupuncture Manipulation

Acupuncture manipulation varies widely among practitioners in clinical settings, and it is difficult to teach novice students how to perform acupuncture manipulation techniques skillfully. The Acupuncture Manipulation Education System (AMES) is an open source software system designed to enhance acupuncture manipulation skills using visual feedback. Using a phantom acupoint and motion sensor, our method for acupuncture manipulation training provides visual feedback regarding the actual movement of the student's acupuncture manipulation in addition to the optimal or intended movement, regardless of whether the manipulation skill is lifting, thrusting, or rotating. Our results show that students could enhance their manipulation skills by training using this method. This video shows the process of manufacturing phantom acupoints and discusses several issues that may require the attention of individuals interested in creating phantom acupoints or operating this system.

Here, we present a protocol for using the Acupuncture Manipulation Education System (AMES) in the training of acupuncture manipulation skills using phantom acupoints.

Acupuncture manipulation varies widely among practitioners in clinical settings, and it is difficult to teach novice students how to perform acupuncture ...

Manipulation of Epileptiform Electrocorticograms (ECoGs) and Sleep in Rats and Mice by Acupuncture

Ancient Chinese literature has documented that acupuncture possesses efficient therapeutic effects on epilepsy and insomnia. There is, however, little research to reveal the possible mechanisms behind these effects. To investigate the effect of acupuncture on epilepsy and sleep, several issues need to be addressed. The first is to identify the acupoints, which correspond between humans, rats, and mice. Furthermore, the depth of insertion of the acupuncture needle, the degree of needle twist in manual needle acupuncture, and the stimulation parameters for electroacupuncture (EA) need to be determined. To evaluate the effects of acupuncture on epilepsy and sleep, a feasible model of epilepsy in rodents is required. We administer pilocarpine into the left central nucleus of the amygdala (CeA) to simulate focal temporal lobe epilepsy (TLE) in rats. Intraperitoneal (IP) injection of pilocarpine induces generalized epilepsy and status epilepticus (SE) in rats. Five IP injections of pentylenetetrazol (PTZ) with a one-day interval between each injection successfully induces spontaneous generalized epilepsy in mice. Recordings of electrocorticograms (ECoGs), electromyograms (EMGs), brain temperature, and locomotor activity are used for sleep analysis in rats, while ECoGs, EMGs, and locomotor activity are employed for sleep analysis in mice. ECoG electrodes are implanted into the frontal, parietal, and contralateral occipital cortices, and a thermistor is implanted above the cerebral cortex by stereotactic surgery. EMG electrodes are implanted into the neck muscles, and an infrared detector determines locomotor activity. The criteria for categorizing vigilance stages, including wakefulness, rapid eye movement (REM) sleep, and non-REM (NREM) sleep are based on information from ECoGs, EMGs, brain temperature, and locomotor activity. Detailed classification criteria are stated in the text.

Manipulation of Epileptiform Electrocorticograms ECoGs and Sleep in Rats and Mice by Acupuncture

This paper demonstrates the performance of acupuncture, epilepsy models, and the analysis of sleep in rodents. The acupuncture procedure and the identification of acupoints are described. Pilocarpine or pentylenetetrazol (PTZ) is used to induce epilepsy. Electrocorticogram (ECoG), electromyogram (EMG), brain temperature, and locomotor activity recordings are employed for sleep analysis.

Ancient Chinese literature has documented that acupuncture possesses efficient therapeutic effects on epilepsy and insomnia. There is, however, little ...

Multi-layer Cortical Ca2+ Imaging in Freely Moving Mice with Prism Probes and Miniaturized Fluorescence Microscopy

In vivo circuit and cellular level functional imaging is a critical tool for understanding the brain in action. High resolution imaging of mouse cortical neurons with two-photon microscopy has provided unique insights into cortical structure, function and plasticity. However, these studies are limited to head fixed animals, greatly reducing the behavioral complexity available for study. In this paper, we describe a procedure for performing chronic fluorescence microscopy with cellular-resolution across multiple cortical layers in freely behaving mice. We used an integrated miniaturized fluorescence microscope paired with an implanted prism probe to simultaneously visualize and record the calcium dynamics of hundreds of neurons across multiple layers of the somatosensory cortex as the mouse engaged in a novel object exploration task, over several days. This technique can be adapted to other brain regions in different animal species for other behavioral paradigms.

Multi-layer Cortical Ca2+ Imaging in Freely Moving Mice with Prism Probes and Miniaturized Fluorescence Microscopy

Here, we present a procedure for performing large-scale Ca2+ imaging with cellular-resolution across multiple cortical layers in freely moving mice. Hundreds of active cells can be observed simultaneously using a miniature, head-mounted microscope coupled with an implanted prism probe.

In vivo circuit and cellular level functional imaging is a critical tool for understanding the brain in action. High resolution imaging of mouse cortical ...

A Wireless, Bidirectional Interface for In Vivo Recording and Stimulation of Neural Activity in Freely Behaving Rats

In vivo electrophysiology is a powerful technique to investigate the relationship between brain activity and behavior at a millisecond and micrometer scale. However, current methods mostly rely on tethered cable recordings or only use unidirectional systems, allowing either recording or stimulation of neural activity, but not at the same time or same target. Here, a new wireless, bidirectional device for simultaneous multichannel recording and stimulation of neural activity in freely behaving rats is described. The system operates through a single portable head stage that both transmits recorded activity and can be targeted in real-time for brain stimulation using a telemetry-based multichannel software. The head stage is equipped with a preamplifier and a rechargeable battery, allowing stable long-term recordings or stimulation for up to 1 h. Importantly, the head stage is compact, weighs 12 g (including battery) and thus has minimal impact on the animal&#180;s behavioral repertoire, making the method applicable to a broad set of behavioral tasks. Moreover, the method has the major advantage that the effect of brain stimulation on neural activity and behavior can be measured simultaneously, providing a tool to assess the causal relationships between specific brain activation patterns and behavior. This feature makes the method particularly valuable for the field of deep brain stimulation, allowing precise assessment, monitoring, and adjustment of stimulation parameters during long-term behavioral experiments. The applicability of the system has been validated using the inferior colliculus as a model structure.

A Wireless, Bidirectional Interface for In Vivo Recording and Stimulation of Neural Activity in Freely Behaving Rats

A wireless, bidirectional system for multi-channel neural recordings and stimulation in freely behaving rats is introduced. The system is light and compact, thus having minimal impact on the animal&#180;s behavioral repertoire. Moreover, this bidirectional system provides a sophisticated tool to assess causal relationships between brain activation patterns and behavior.

In vivo electrophysiology is a powerful technique to investigate the relationship between brain activity and behavior at a millisecond and micrometer ...

Assessing Activity-based Anorexia in Mice

Rodents develop activity-based anorexia (ABA) when exposed to a restricted feeding schedule and allowed free access to a running wheel. These conditions lead to a life-threatening reduction in body weight. However, rodents exposed to only one of these conditions ultimately adapt to re-establish normal body weight. Although increased running coupled with reduction in voluntary food intake appear paradoxical under ABA conditions, ABA behavior is observed across numerous mammalian species. 
The ABA paradigm provides an animal model for anorexia nervosa (AN), an eating disorder with severe dysregulation of appetite-behavior. Subjects are singly housed with free access to a running wheel. Each day, the subject is offered food for a limited amount of time. During the course of the experiment, a subject's body weight decreases from high activity and low caloric intake. The duration of the study varies based on how long food is offered daily, the type of food offered, the strain of mouse, if drugs are being tested, and environmental factors.
A lack of effective pharmacological treatments for AN patients, their low quality of life, high cost of treatment, and their high mortality rate indicate the urgency to further research AN. We provide a basic outline for performing ABA experiments with mice, offering a method to investigate AN-like behavior in order to develop novel therapies. This protocol is optimized for use in Balb/cJ mice, but can easily be manipulated for other strains, providing great flexibility in working with different questions, especially related to genetic factors of ABA.

Mice individually housed with a running wheel while given limited access to food develop reductions in food consumption and increase activity on the running wheel. This experimental phenomenon is called activity-based anorexia. This paradigm provides an experimental tool for studying the neurobiology and behaviors underlying aspects of anorexia nervosa.

Rodents develop activity-based anorexia (ABA) when exposed to a restricted feeding schedule and allowed free access to a running wheel. These conditions ...

Simultaneous Recordings of Cortical Local Field Potentials and Electrocorticograms in Response to Nociceptive Laser Stimuli from Freely Moving Rats

Electrocortical responses, elicited by laser heat pulses that selectively activate nociceptive free nerve endings, are widely used in many animal and human studies to investigate the cortical processing of nociceptive information. These laser-evoked brain potentials (LEPs) consist of several transient responses that are time-locked to the onset of laser stimuli. However, the functional properties of the LEP responses are still largely unknown, due to the lack of a sampling technique that can simultaneously record neural activities at the surface of the cortex (i.e., electrocorticogram [ECoG] and scalp electroencephalogram [scalp EEG]) and inside the brain (i.e., local field potential [LFP]). To address this issue, we present here an animal protocol using freely moving rats. This protocol is composed of three main procedures: (1) animal preparation and surgical procedures, (2) a simultaneous recording of ECoG and LFP in response to nociceptive laser stimuli, and (3) data analysis and feature extraction. Specifically, with the help of a 3D-printed protective shell, both ECoG and LFP electrodes implanted on the rat&#39;s skull were securely held together. During data collection, laser pulses were delivered on the rat&#39;s forepaws through gaps in the bottom of the chamber when the animal was in spontaneous stillness. Ongoing white noise was played to avoid the activation of the auditory system by the laser-generated ultrasounds. As a consequence, only nociceptive responses were selectively recorded. Using the standard analytical procedures (e.g., band-pass filtering, epoch extraction, and baseline correction) to extract stimulus-related brain responses, we obtained results showing that LEPs with a high signal-to-noise ratio were simultaneously recorded from ECoG and LFP electrodes. This methodology makes the simultaneous recording of ECoG and LFP activities possible, which provides a bridge of electrocortical signals at the mesoscopic and macroscopic levels, thereby facilitating the investigation of nociceptive information processing in the brain.

We developed a technique that simultaneously records both electrocorticography and local field potentials in response to nociceptive laser stimuli from freely moving rats. This technique helps establish a direct relationship of electrocortical signals at the mesoscopic and macroscopic levels, which facilitates the investigation of nociceptive information processing in the brain.

Electrocortical responses, elicited by laser heat pulses that selectively activate nociceptive free nerve endings, are widely used in many animal and ...