Biological Sciences Division
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Phosphoproteome profiling of human skin fibroblast cells in response to low- and high-dose irradiation.
Journal of proteome research May, 2006 | Pubmed ID: 16674116
Comparison of aerobic and photosynthetic Rhodobacter sphaeroides 2.4.1 proteomes.
Journal of microbiological methods Dec, 2006 | Pubmed ID: 16828186
Application of the accurate mass and time tag approach to the proteome analysis of sub-cellular fractions obtained from Rhodobacter sphaeroides 2.4.1. Aerobic and photosynthetic cell cultures.
Journal of proteome research Aug, 2006 | Pubmed ID: 16889416
Proteomic analysis of stationary phase in the marine bacterium "Candidatus Pelagibacter ubique".
Applied and environmental microbiology Jul, 2008 | Pubmed ID: 18469119
Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II.
Molecular cell Jan, 2009 | Pubmed ID: 19110459
Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.
Applied and environmental microbiology Oct, 2009 | Pubmed ID: 19717633
Proteomic detection of non-annotated protein-coding genes in Pseudomonas fluorescens Pf0-1.
PloS one Dec, 2009 | Pubmed ID: 20041161
Transcriptional and translational regulatory responses to iron limitation in the globally distributed marine bacterium Candidatus pelagibacter ubique.
PloS one May, 2010 | Pubmed ID: 20463970
Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome.
The ISME journal Jan, 2011 | Pubmed ID: 20613792
Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles.
Environmental science & technology Dec, 2010 | Pubmed ID: 21058662
Proteome analysis of Borrelia burgdorferi response to environmental change.
PloS one Nov, 2010 | Pubmed ID: 21072190
Development of a biomarker for Geobacter activity and strain composition; proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI).
Microbial biotechnology Jan, 2011 | Pubmed ID: 21255372
Diurnal rhythms result in significant changes in the cellular protein complement in the cyanobacterium Cyanothece 51142.
PloS one , 2011 | Pubmed ID: 21364985
Trypsin-catalyzed oxygen-18 labeling for quantitative proteomics.
Methods in molecular biology (Clifton, N.J.) , 2011 | Pubmed ID: 21604114
Dynamic Proteome Analysis of Cyanothece sp. ATCC 51142 under Constant Light.
Journal of proteome research Feb, 2012 | Pubmed ID: 22060561
Simple sodium dodecyl sulfate-assisted sample preparation method for LC-MS-based proteomics applications.
Analytical chemistry Mar, 2012 | Pubmed ID: 22339560
Time-course analysis of the Shewanella amazonensis SB2B proteome in response to sodium chloride shock.
Scientific reports , 2011 | Pubmed ID: 22355544
Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens.
The ISME journal Sep, 2012 | Pubmed ID: 22378535
A systematic analysis of a deep mouse epididymal sperm proteome.
Biology of reproduction Jun, 2012 | Pubmed ID: 23115268
In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing.
Molecular cell Dec, 2012 | Pubmed ID: 23142082
Suite of activity-based probes for cellulose-degrading enzymes.
Journal of the American Chemical Society Dec, 2012 | Pubmed ID: 23176123
Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.
PloS one , 2013 | Pubmed ID: 23472107
Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens.
Applied and environmental microbiology Jun, 2013 | Pubmed ID: 23584789
Trauma-associated human neutrophil alterations revealed by comparative proteomics profiling.
Proteomics. Clinical applications Aug, 2013 | Pubmed ID: 23589343
Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium.
The ISME journal Sep, 2013 | Pubmed ID: 23657364
Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies.
Proteomics Oct, 2013 | Pubmed ID: 23776032
Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass.
PloS one , 2013 | Pubmed ID: 23894306
Long-gradient separations coupled with selected reaction monitoring for highly sensitive, large scale targeted protein quantification in a single analysis.
Analytical chemistry Oct, 2013 | Pubmed ID: 24004026
A highly sensitive targeted mass spectrometric assay for quantification of AGR2 protein in human urine and serum.
Journal of proteome research Feb, 2014 | Pubmed ID: 24251762
Proteomic and transcriptomic analyses of "Candidatus Pelagibacter ubique" describe the first PII-independent response to nitrogen limitation in a free-living Alphaproteobacterium.
mBio Nov, 2013 | Pubmed ID: 24281717
The identification of novel potential injury mechanisms and candidate biomarkers in renal allograft rejection by quantitative proteomics.
Molecular & cellular proteomics : MCP Feb, 2014 | Pubmed ID: 24335474
Optimization for peptide sample preparation for urine peptidomics.
Clinical proteomics Feb, 2014 | Pubmed ID: 24568099
Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer.
The ISME journal Jul, 2014 | Pubmed ID: 24621521
Proteomic profiles of five strains of oxygenic photosynthetic cyanobacteria of the genus Cyanothece.
Journal of proteome research Jul, 2014 | Pubmed ID: 24846609
The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation.
Environmental microbiology reports Aug, 2014 | Pubmed ID: 24992538
Proteomics informed by transcriptomics identifies novel secreted proteins in Dermacentor andersoni saliva.
International journal for parasitology Nov, 2014 | Pubmed ID: 25110293
Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements.
Molecular & cellular proteomics : MCP Aug, 2014 | Pubmed ID: 25129695
Functional diversification of maize RNA polymerase IV and V subtypes via alternative catalytic subunits.
Cell reports Oct, 2014 | Pubmed ID: 25284785
Bayesian proteoform modeling improves protein quantification of global proteomic measurements.
Molecular & cellular proteomics : MCP Dec, 2014 | Pubmed ID: 25433089
Sensitive targeted quantification of ERK phosphorylation dynamics and stoichiometry in human cells without affinity enrichment.
Analytical chemistry Jan, 2015 | Pubmed ID: 25517423
Perturbations in the urinary exosome in transplant rejection.
Frontiers in medicine , 2014 | Pubmed ID: 25593928
Subunit compositions of Arabidopsis RNA polymerases I and III reveal Pol I- and Pol III-specific forms of the AC40 subunit and alternative forms of the C53 subunit.
Nucleic acids research Apr, 2015 | Pubmed ID: 25813043
Diacyltransferase Activity and Chain Length Specificity of Mycobacterium tuberculosis PapA5 in the Synthesis of Alkyl β-Diol Lipids.
Biochemistry Sep, 2015 | Pubmed ID: 26271001
Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants.
PloS one , 2015 | Pubmed ID: 26317212
Multi-Omic Dynamics Associate Oxygenic Photosynthesis with Nitrogenase-Mediated H2 Production in Cyanothece sp. ATCC 51142.
Scientific reports Nov, 2015 | Pubmed ID: 26525576
Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism.
Cell host & microbe Feb, 2016 | Pubmed ID: 26867183
Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica.
BMC genomics Feb, 2016 | Pubmed ID: 26911370
Mining the human urine proteome for monitoring renal transplant injury.
Kidney international 06, 2016 | Pubmed ID: 27165815
Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway.
Science signaling 07, 2016 | Pubmed ID: 27405981
Unambiguous metabolite identification in high-throughput metabolomics by hybrid 1D H NMR/ESI MS approach.
Magnetic resonance in chemistry : MRC Dec, 2016 | Pubmed ID: 27539910
Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis.
mBio 08, 2016 | Pubmed ID: 27555310
The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol.
Nature microbiology 05, 2016 | Pubmed ID: 27573103
The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates.
Molecular ecology Nov, 2016 | Pubmed ID: 27696597
MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses.
mSystems May-Jun, 2016 | Pubmed ID: 27822525
Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes.
mSystems May-Jun, 2016 | Pubmed ID: 27822530
Proteome Remodeling in Response to Sulfur Limitation in " Pelagibacter ubique".
mSystems Jul-Aug, 2016 | Pubmed ID: 27822545
New roles in hemicellulosic sugar fermentation for the uncultivated Bacteroidetes family BS11.
The ISME journal 03, 2017 | Pubmed ID: 27959345
An efficient method for native protein purification in the selected range from prostate cancer tissue digests.
Chinese clinical oncology Dec, 2016 | Pubmed ID: 28061542
MPLEx: a method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling.
The Analyst Jan, 2017 | Pubmed ID: 28091625
Effects of delayed NSAID administration after experimental eccentric contraction injury - A cellular and proteomics study.
PloS one , 2017 | Pubmed ID: 28245256
Phycobilisome truncation causes widespread proteome changes in Synechocystis sp. PCC 6803.
PloS one , 2017 | Pubmed ID: 28253354
Targeted quantification of functional enzyme dynamics in environmental samples for microbially mediated biogeochemical processes.
Environmental microbiology reports Oct, 2017 | Pubmed ID: 28618201
Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in .
mBio 06, 2017 | Pubmed ID: 28634240
Sulfide Generation by Dominant Microorganisms in Hydraulically Fractured Shales.
mSphere Jul-Aug, 2017 | Pubmed ID: 28685163
LC-SRM-Based Targeted Quantification of Urinary Protein Biomarkers.
Methods in molecular biology (Clifton, N.J.) Nov, 2017 | Pubmed ID: 29116567
Multiplexed targeted mass spectrometry assays for prostate cancer-associated urinary proteins.
Oncotarget Nov, 2017 | Pubmed ID: 29254211
MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape.
Proceedings of the National Academy of Sciences of the United States of America Jan, 2018 | Pubmed ID: 29339515
Structure Elucidation of Unknown Metabolites in Metabolomics by Combined NMR and MS/MS Prediction.
Metabolites Jan, 2018 | Pubmed ID: 29342073
Salmonella-Mediated Inflammation Eliminates Competitors for Fructose-Asparagine in the Gut.
Infection and immunity May, 2018 | Pubmed ID: 29483291
Optimization for Peptide Sample Preparation for Urine Peptidomics.
Methods in molecular biology (Clifton, N.J.) Apr, 2018 | Pubmed ID: 29623538
Urinary Virome Perturbations in Kidney Transplantation.
Frontiers in medicine , 2018 | Pubmed ID: 29725592
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