Carrie D. Nicora

Phosphoproteome profiling of human skin fibroblast cells in response to low- and high-dose irradiation.

Comparison of aerobic and photosynthetic Rhodobacter sphaeroides 2.4.1 proteomes.

Application of the accurate mass and time tag approach to the proteome analysis of sub-cellular fractions obtained from Rhodobacter sphaeroides 2.4.1. Aerobic and photosynthetic cell cultures.

Proteomic analysis of stationary phase in the marine bacterium "Candidatus Pelagibacter ubique".

Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II.

Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.

Proteomic detection of non-annotated protein-coding genes in Pseudomonas fluorescens Pf0-1.

Transcriptional and translational regulatory responses to iron limitation in the globally distributed marine bacterium Candidatus pelagibacter ubique.

Proteome insights into the symbiotic relationship between a captive colony of Nasutitermes corniger and its hindgut microbiome.

Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles.

Proteome analysis of Borrelia burgdorferi response to environmental change.

Development of a biomarker for Geobacter activity and strain composition; proteogenomic analysis of the citrate synthase protein during bioremediation of U(VI).

Diurnal rhythms result in significant changes in the cellular protein complement in the cyanobacterium Cyanothece 51142.

Trypsin-catalyzed oxygen-18 labeling for quantitative proteomics.

Dynamic Proteome Analysis of Cyanothece sp. ATCC 51142 under Constant Light.

Simple sodium dodecyl sulfate-assisted sample preparation method for LC-MS-based proteomics applications.

Time-course analysis of the Shewanella amazonensis SB2B proteome in response to sodium chloride shock.

Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens.

A systematic analysis of a deep mouse epididymal sperm proteome.

In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing.

Suite of activity-based probes for cellulose-degrading enzymes.

Fluctuations in species-level protein expression occur during element and nutrient cycling in the subsurface.

Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens.

Trauma-associated human neutrophil alterations revealed by comparative proteomics profiling.

Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium.

Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies.

Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass.

Long-gradient separations coupled with selected reaction monitoring for highly sensitive, large scale targeted protein quantification in a single analysis.

A highly sensitive targeted mass spectrometric assay for quantification of AGR2 protein in human urine and serum.

Proteomic and transcriptomic analyses of "Candidatus Pelagibacter ubique" describe the first PII-independent response to nitrogen limitation in a free-living Alphaproteobacterium.

The identification of novel potential injury mechanisms and candidate biomarkers in renal allograft rejection by quantitative proteomics.

Optimization for peptide sample preparation for urine peptidomics.

Metabolic interdependencies between phylogenetically novel fermenters and respiratory organisms in an unconfined aquifer.

Proteomic profiles of five strains of oxygenic photosynthetic cyanobacteria of the genus Cyanothece.

The fungus gardens of leaf-cutter ants undergo a distinct physiological transition during biomass degradation.

Proteomics informed by transcriptomics identifies novel secreted proteins in Dermacentor andersoni saliva.

Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements.

Functional diversification of maize RNA polymerase IV and V subtypes via alternative catalytic subunits.

Bayesian proteoform modeling improves protein quantification of global proteomic measurements.

Sensitive targeted quantification of ERK phosphorylation dynamics and stoichiometry in human cells without affinity enrichment.

Perturbations in the urinary exosome in transplant rejection.

Subunit compositions of Arabidopsis RNA polymerases I and III reveal Pol I- and Pol III-specific forms of the AC40 subunit and alternative forms of the C53 subunit.

Diacyltransferase Activity and Chain Length Specificity of Mycobacterium tuberculosis PapA5 in the Synthesis of Alkyl β-Diol Lipids.

Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants.

Multi-Omic Dynamics Associate Oxygenic Photosynthesis with Nitrogenase-Mediated H2 Production in Cyanothece sp. ATCC 51142.

Integrated Omics Analysis of Pathogenic Host Responses during Pandemic H1N1 Influenza Virus Infection: The Crucial Role of Lipid Metabolism.

Multi-omics analysis reveals regulators of the response to nitrogen limitation in Yarrowia lipolytica.

Mining the human urine proteome for monitoring renal transplant injury.

Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway.

Unambiguous metabolite identification in high-throughput metabolomics by hybrid 1D H NMR/ESI MS approach.

Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis.

The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol.

The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates.

MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses.

Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes.

Proteome Remodeling in Response to Sulfur Limitation in " Pelagibacter ubique".

New roles in hemicellulosic sugar fermentation for the uncultivated Bacteroidetes family BS11.

An efficient method for native protein purification in the selected range from prostate cancer tissue digests.

MPLEx: a method for simultaneous pathogen inactivation and extraction of samples for multi-omics profiling.

Effects of delayed NSAID administration after experimental eccentric contraction injury - A cellular and proteomics study.

Phycobilisome truncation causes widespread proteome changes in Synechocystis sp. PCC 6803.

Targeted quantification of functional enzyme dynamics in environmental samples for microbially mediated biogeochemical processes.

Leucine Biosynthesis Is Involved in Regulating High Lipid Accumulation in .

Sulfide Generation by Dominant Microorganisms in Hydraulically Fractured Shales.

LC-SRM-Based Targeted Quantification of Urinary Protein Biomarkers.

Multiplexed targeted mass spectrometry assays for prostate cancer-associated urinary proteins.

MERS-CoV and H5N1 influenza virus antagonize antigen presentation by altering the epigenetic landscape.

Structure Elucidation of Unknown Metabolites in Metabolomics by Combined NMR and MS/MS Prediction.

Salmonella-Mediated Inflammation Eliminates Competitors for Fructose-Asparagine in the Gut.

Optimization for Peptide Sample Preparation for Urine Peptidomics.

Urinary Virome Perturbations in Kidney Transplantation.