Victor Ruotti

Integrative genomics: in silico coupling of rat physiology and complex traits with mouse and human data.

ChromSorter PC: a database of chromosomal regions associated with human prostate cancer.

ProMoST (Protein Modification Screening Tool): a web-based tool for mapping protein modifications on two-dimensional gels.

Automated analysis of conserved syntenies for the zebrafish genome.

DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy.

Tools and strategies for physiological genomics: the Rat Genome Database.

Induced pluripotent stem cell lines derived from human somatic cells.

Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells.

A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets.

Molecular profiling reveals similarities and differences between primitive subsets of hematopoietic cells generated in vitro from human embryonic stem cells and in vivo during embryogenesis.

ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches.

Human DNA methylomes at base resolution show widespread epigenomic differences.

RNA-Seq gene expression estimation with read mapping uncertainty.

Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.

Highly consistent, fully representative mRNA-Seq libraries from ten nanograms of total RNA.

Chemically defined conditions for human iPSC derivation and culture.

Proteomic and phosphoproteomic comparison of human ES and iPS cells.