Department of Biochemistry and Molecular Biology
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A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling.
Nature biotechnology Mar, 2003 | Pubmed ID: 12577067
Mass spectrometric-based approaches in quantitative proteomics.
Methods (San Diego, Calif.) Feb, 2003 | Pubmed ID: 12606218
Unbiased quantitative proteomics of lipid rafts reveals high specificity for signaling factors.
Proceedings of the National Academy of Sciences of the United States of America May, 2003 | Pubmed ID: 12724530
Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins.
Molecular & cellular proteomics : MCP Dec, 2003 | Pubmed ID: 14517339
RNA and RNA binding proteins participate in early stages of cell spreading through spreading initiation centers.
Cell May, 2004 | Pubmed ID: 15163412
Intracellular delivery of phosphatidylinositol (3,4,5)-trisphosphate causes incorporation of glucose transporter 4 into the plasma membrane of muscle and fat cells without increasing glucose uptake.
The Journal of biological chemistry Jul, 2004 | Pubmed ID: 15166230
Differential expression profiling of membrane proteins by quantitative proteomics in a human mesenchymal stem cell line undergoing osteoblast differentiation.
Stem cells (Dayton, Ohio) Oct, 2005 | Pubmed ID: 16210410
Insulin-dependent interactions of proteins with GLUT4 revealed through stable isotope labeling by amino acids in cell culture (SILAC).
Journal of proteome research Jan, 2006 | Pubmed ID: 16396496
Quantitative proteomic comparison of rat mitochondria from muscle, heart, and liver.
Molecular & cellular proteomics : MCP Apr, 2006 | Pubmed ID: 16415296
Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase D treatment.
Journal of proteome research Apr, 2006 | Pubmed ID: 16602701
A mammalian organelle map by protein correlation profiling.
Cell Apr, 2006 | Pubmed ID: 16615899
Quantitative comparison of caste differences in honeybee hemolymph.
Molecular & cellular proteomics : MCP Dec, 2006 | Pubmed ID: 16920818
MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes.
Nucleic acids research Jan, 2007 | Pubmed ID: 17090601
PrestOMIC, an open source application for dissemination of proteomic datasets by individual laboratories.
Proteome science , 2007 | Pubmed ID: 17553161
Proteomics analysis of interleukin (IL)-7-induced signaling effectors shows selective changes in IL-7Ralpha449F knock-in T cell progenitors.
Molecular & cellular proteomics : MCP Oct, 2007 | Pubmed ID: 17602185
Lipid raft proteomics: more than just detergent-resistant membranes.
Sub-cellular biochemistry , 2007 | Pubmed ID: 17953390
The dynamic phagosomal proteome and the contribution of the endoplasmic reticulum.
Proceedings of the National Academy of Sciences of the United States of America Nov, 2007 | Pubmed ID: 18006660
Proteomics of photoreceptor outer segments identifies a subset of SNARE and Rab proteins implicated in membrane vesicle trafficking and fusion.
Molecular & cellular proteomics : MCP Jun, 2008 | Pubmed ID: 18245078
Immunoproteomic discovery of novel T cell antigens from the obligate intracellular pathogen Chlamydia.
Journal of immunology (Baltimore, Md. : 1950) Feb, 2008 | Pubmed ID: 18250455
Proteomic analysis of the secretome of Leishmania donovani.
Genome biology , 2008 | Pubmed ID: 18282296
Integrin-linked kinase localizes to the centrosome and regulates mitotic spindle organization.
The Journal of cell biology Feb, 2008 | Pubmed ID: 18283114
Mapping the integrin-linked kinase interactome using SILAC.
Journal of proteome research Apr, 2008 | Pubmed ID: 18327965
Contributions of proteomics to understanding phagosome maturation.
Cellular microbiology Jul, 2008 | Pubmed ID: 18331591
Rictor and integrin-linked kinase interact and regulate Akt phosphorylation and cancer cell survival.
Cancer research Mar, 2008 | Pubmed ID: 18339839
Identification of cognate host targets and specific ubiquitylation sites on the Salmonella SPI-1 effector SopB/SigD.
Journal of proteomics Apr, 2008 | Pubmed ID: 18541478
Identification and biochemical characterization of the SLC9A7 interactome.
Molecular membrane biology Aug, 2008 | Pubmed ID: 18654930
Lessons learned from lipid raft proteomics.
Expert review of proteomics Aug, 2008 | Pubmed ID: 18761463
Biochemical and proteomic approaches for the study of membrane microdomains.
Journal of proteomics Feb, 2009 | Pubmed ID: 18926938
Changes in protein expression during honey bee larval development.
Genome biology , 2008 | Pubmed ID: 18959778
Mitochondria do not contain lipid rafts, and lipid rafts do not contain mitochondrial proteins.
Journal of lipid research May, 2009 | Pubmed ID: 19136664
Moving closer to the lipid raft proteome using quantitative proteomics.
Methods in molecular biology (Clifton, N.J.) , 2009 | Pubmed ID: 19153694
Cell-based identification of natural substrates and cleavage sites for extracellular proteases by SILAC proteomics.
Methods in molecular biology (Clifton, N.J.) , 2009 | Pubmed ID: 19377966
Contributions of quantitative proteomics to understanding membrane microdomains.
Journal of lipid research Oct, 2009 | Pubmed ID: 19578161
Intracellular receptor for human host defense peptide LL-37 in monocytes.
Journal of immunology (Baltimore, Md. : 1950) Aug, 2009 | Pubmed ID: 19605696
The innate immune and systemic response in honey bees to a bacterial pathogen, Paenibacillus larvae.
BMC genomics , 2009 | Pubmed ID: 19695106
Phosphoproteomics--finally fulfilling the promise?
Molecular bioSystems Oct, 2009 | Pubmed ID: 19756301
Sequestosome-1/p62 is the key intracellular target of innate defense regulator peptide.
The Journal of biological chemistry Dec, 2009 | Pubmed ID: 19850933
MSQuant, an open source platform for mass spectrometry-based quantitative proteomics.
Journal of proteome research Jan, 2010 | Pubmed ID: 19888749
A comprehensive proteomic analysis of the type III secretome of Citrobacter rodentium.
The Journal of biological chemistry Feb, 2010 | Pubmed ID: 20034934
Quantitative analysis of proteome coverage and recovery rates for upstream fractionation methods in proteomics.
Journal of proteome research Apr, 2010 | Pubmed ID: 20078137
Structural and biochemical characterization of SrcA, a multi-cargo type III secretion chaperone in Salmonella required for pathogenic association with a host.
PLoS pathogens Feb, 2010 | Pubmed ID: 20140193
An exosome-based secretion pathway is responsible for protein export from Leishmania and communication with macrophages.
Journal of cell science Mar, 2010 | Pubmed ID: 20159964
Isotopic labeling of terminal amines in complex samples identifies protein N-termini and protease cleavage products.
Nature biotechnology Mar, 2010 | Pubmed ID: 20208520
The pathogenic E. coli type III effector EspZ interacts with host CD98 and facilitates host cell prosurvival signalling.
Cellular microbiology Sep, 2010 | Pubmed ID: 20374249
Pseudopodial actin dynamics control epithelial-mesenchymal transition in metastatic cancer cells.
Cancer research May, 2010 | Pubmed ID: 20388789
PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.
Bioinformatics (Oxford, England) Jul, 2010 | Pubmed ID: 20472543
Release of membrane-bound vesicles and inhibition of tumor cell adhesion by the peptide Neopetrosiamide A.
PloS one , 2010 | Pubmed ID: 20520768
Development of a Chlamydia trachomatis T cell Vaccine.
Human vaccines Aug, 2010 | Pubmed ID: 20523121
Ecological adaptation of diverse honey bee (Apis mellifera) populations.
PloS one , 2010 | Pubmed ID: 20559562
An integrated global strategy for cell lysis, fractionation, enrichment and mass spectrometric analysis of phosphorylated peptides.
Molecular bioSystems May, 2010 | Pubmed ID: 20567768
Integrin-linked kinase is a functional Mn2+-dependent protein kinase that regulates glycogen synthase kinase-3β (GSK-3beta) phosphorylation.
PloS one , 2010 | Pubmed ID: 20827300
EseG, an effector of the type III secretion system of Edwardsiella tarda, triggers microtubule destabilization.
Infection and immunity Dec, 2010 | Pubmed ID: 20855515
Leishmania exosomes modulate innate and adaptive immune responses through effects on monocytes and dendritic cells.
Journal of immunology (Baltimore, Md. : 1950) Nov, 2010 | Pubmed ID: 20881185
Trans-SILAC: sorting out the non-cell-autonomous proteome.
Nature methods Nov, 2010 | Pubmed ID: 20935649
Mapping the protein interaction network in methicillin-resistant Staphylococcus aureus.
Journal of proteome research Mar, 2011 | Pubmed ID: 21166474
Interpretation of data underlying the link between CCD and an invertebrate iridescent virus.
Molecular & cellular proteomics : MCP Jan, 2011 | Pubmed ID: 21205880
Immunization with live and dead Chlamydia muridarum induces different levels of protective immunity in a murine genital tract model: correlation with MHC class II peptide presentation and multifunctional Th1 cells.
Journal of immunology (Baltimore, Md. : 1950) Mar, 2011 | Pubmed ID: 21296978
Interpretation of data underlying the link between colony collapse disorder (CCD) and an invertebrate iridescent virus.
Molecular & cellular proteomics : MCP Mar, 2011 | Pubmed ID: 21364086
Organization and assembly of the TRAPPII complex.
Traffic (Copenhagen, Denmark) Jun, 2011 | Pubmed ID: 21453443
Biomarkers for severity of spinal cord injury in the cerebrospinal fluid of rats.
PloS one , 2011 | Pubmed ID: 21559420
Quantitative mass spectrometry catalogues Salmonella pathogenicity island-2 effectors and identifies their cognate host binding partners.
The Journal of biological chemistry Jul, 2011 | Pubmed ID: 21566117
A honey bee (Apis mellifera L.) PeptideAtlas crossing castes and tissues.
BMC genomics , 2011 | Pubmed ID: 21639908
Differential impact of caveolae and caveolin-1 scaffolds on the membrane raft proteome.
Molecular & cellular proteomics : MCP Oct, 2011 | Pubmed ID: 21753190
Quantitative proteomic analysis reveals formation of an EscL-EscQ-EscN type III complex in enteropathogenic Escherichia coli.
Journal of bacteriology Oct, 2011 | Pubmed ID: 21804003
The pathogenic Escherichia coli type III secreted protease NleC degrades the host acetyltransferase p300.
Cellular microbiology Oct, 2011 | Pubmed ID: 21812888
Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees.
BMC genomics , 2011 | Pubmed ID: 21923906
Phosphoproteomic analysis of Salmonella-infected cells identifies key kinase regulators and SopB-dependent host phosphorylation events.
Science signaling Sep, 2011 | Pubmed ID: 21934108
The worker honeybee fat body proteome is extensively remodeled preceding a major life-history transition.
PloS one , 2011 | Pubmed ID: 21969861
Expression of PTRF in PC-3 Cells Modulates Cholesterol Dynamics and the Actin Cytoskeleton Impacting Secretion Pathways.
Molecular & cellular proteomics : MCP Feb, 2012 | Pubmed ID: 22030351
Mechanisms of stable lipid loss in a social insect.
The Journal of experimental biology Nov, 2011 | Pubmed ID: 22031746
Cheminformatics-Driven Discovery of Selective, Nanomolar Inhibitors for Staphylococcal Pyruvate Kinase.
ACS chemical biology Nov, 2011 | Pubmed ID: 22066782
The gap junction protein Cx43 is involved in the bone-targeted metastatic behaviour of human prostate cancer cells.
Clinical & experimental metastasis Feb, 2012 | Pubmed ID: 22080401
Evaluation of mTOR-regulated mRNA translation.
Methods in molecular biology (Clifton, N.J.) , 2012 | Pubmed ID: 22125065
Nanodiscs and SILAC-Based Mass Spectrometry to Identify a Membrane Protein Interactome.
Journal of proteome research Feb, 2012 | Pubmed ID: 22129326
Bromenshenk et al (PLoS One, 2011, 5(10):e13181) have claimed to have found peptides from an invertebrate iridovirus in bees.
Molecular & cellular proteomics : MCP Jan, 2012 | Pubmed ID: 22238354
Alternative reading frame selection mediated by a tRNA-like domain of an internal ribosome entry site.
Proceedings of the National Academy of Sciences of the United States of America Jan, 2012 | Pubmed ID: 22247292
Roles of the mammalian target of rapamycin, mTOR, in controlling ribosome biogenesis and protein synthesis.
Biochemical Society transactions Feb, 2012 | Pubmed ID: 22260684
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