This study was supported by grants from grant of the Outstanding Scientist of Shandong (JQ201421) and grant from NSFC (81371226).

1. Isolation of Mitochondria
NOTE: All solutions and equipment should be precooled to 0 - 4 &#176;C and kept on ice.
<ol>
	<li>Seed about 3 x 106 SH-SY5Y cells per 10 cm cell culture dish. Culture cells in high-glucose Dulbecco&#39;s modified Eagle medium with 10% fetal bovine serum, penicillin (100 U/mL)-streptomycin (100 &#181;g/mL). Maintain at 37 &#176;C in an incubator containing 5% CO2 overnight. 
	NOTE: At least 1 - 2 x 107 SH-SY5Y cells are neede...

<ol>
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K., Reynolds, I. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=High-affinity+calcium+indicators+underestimate+increases+in+intracellular+calcium+concentrations+associated+with+excitotoxic+glutamate+stimulations.">High-affinity calcium indicators underestimate increases in intracellular calcium concentrations associated with excitotoxic glutamate stimulations.</a> Neuroscience. 89 (1), 91-100 (1999).</li><li>Bambrick, L. L., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cyclosporin+A+increases+mitochondrial+calcium+uptake+capacity+in+cortical+astrocytes+but+not+cerebellar+granule+neurons.">Cyclosporin A increases mitochondrial calcium uptake capacity in cortical astrocytes but not cerebellar granule neurons.</a> J Bioenerg Biomembr. 38 (1), 43-47 (2006).</li><li>Zhao, K., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cell-permeable+peptide+antioxidants+targeted+to+inner+mitochondrial+membrane+inhibit+mitochondrial+swelling,+oxidative+cell+death,+and+reperfusion+injury.">Cell-permeable peptide antioxidants targeted to inner mitochondrial membrane inhibit mitochondrial swelling, oxidative cell death, and reperfusion injury.</a> J Biol Chem. 279 (33), 34682-34690 (2004).</li><li>Muriel, M. P., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Mitochondrial+free+calcium+levels+(Rhod-2+fluorescence)+and+ultrastructural+alterations+in+neuronally+differentiated+PC12+cells+during+ceramide-dependent+cell+death.">Mitochondrial free calcium levels (Rhod-2 fluorescence) and ultrastructural alterations in neuronally differentiated PC12 cells during ceramide-dependent cell death.</a> J Comp Neurol. 426 (2), 297-315 (2000).</li><li>Allman, R., Hann, A. C., Phillips, A. P., Martin, K. L., Lloyd, D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Growth+of+Azotobacter+vinelandii+with+correlation+of+Coulter+cell+size,+flow+cytometric+parameters,+and+ultrastructure.">Growth of Azotobacter vinelandii with correlation of Coulter cell size, flow cytometric parameters, and ultrastructure.</a> Cytometry. 11 (7), 822-831 (1990).</li><li>Wiechelman, K. J., Braun, R. D., Fitzpatrick, J. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Investigation+of+the+bicinchoninic+acid+protein+assay:+identification+of+the+groups+responsible+for+color+formation.">Investigation of the bicinchoninic acid protein assay: identification of the groups responsible for color formation.</a> Anal Biochem. 175 (1), 231-237 (1988).</li><li>Petronilli, V., Nicolli, A., Costantini, P., Colonna, R., Bernardi, P. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Regulation+of+the+permeability+transition+pore,+a+voltage-dependent+mitochondrial+channel+inhibited+by+cyclosporin+A.">Regulation of the permeability transition pore, a voltage-dependent mitochondrial channel inhibited by cyclosporin A.</a> Biochim Biophys Acta. 1187 (2), 255-259 (1994).</li><li>Pastorino, J. G., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Functional+consequences+of+the+sustained+or+transient+activation+by+Bax+of+the+mitochondrial+permeability+transition+pore.">Functional consequences of the sustained or transient activation by Bax of the mitochondrial permeability transition pore.</a> J Biol Chem. 274 (44), 31734-31739 (1999).</li><li>Gunter, T. E., Sheu, S. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Characteristics+and+possible+functions+of+mitochondrial+Ca(2+)+transport+mechanisms.">Characteristics and possible functions of mitochondrial Ca(2+) transport mechanisms.</a> Biochim Biophys Acta. 1787 (11), 1291-1308 (2009).</li></ol>

X. Sun supervised the experiments. Wei Li performed the experiments. Chen Zhang and X. Sun wrote the paper.

Here, we described a simple and effective protocol for the mitochondrial Ca2+ retention capacity assay and Ca2+-triggered mitochondrial swelling assay.
For the mitochondrial isolation, make sure that all the materials and tubes are on ice, especially when homogenizing the cells. 0.25% trypsin-EDTA can also be used to detach cells from the dish for 5 min at 37 &#176;C. After 15 - 25 strokes, it is necessary to observe the intact cell membrane under the microscope and avoid...

Mitochondria are the main cellular organs to produce nearly 95% of the ATP used in the mammalian cells by oxidative phosphorylation. It is reported that the sequestered micromolar concentration of Ca2+ by mitochondria, the presence of ADP, and inorganic phosphate can be used to phosphorylate ADP to synthesis ATP1. When the concentration of cytosolic Ca2+ goes above a threshold, mitochondria can uptake Ca2+ rapidly and efflux it slowly. Thus, the functioning mitochondria can influx the increased cytosolic Ca2+. Irrelevant to the participation in the oxidative phosphorylation, the mitochondrial Ca2+ also take part in the cytosolic calcium signals and activate the mitochondrial apoptotic mechanism by inducing the opening of the mPTP in the inner mitochondrial membrane2. It has been widely recognized that abnormal elevation of intracellular Ca2+ can induce mitochondrial massive swelling by opening the mPTP3. Thus, this protocol aims to assess the mitochondrial function by quantifying the mitochondrial Ca2+ retention capacity and Ca2+-trigged mitochondrial swelling.
Ca2+ retention capacity is the measurement of the ability of mitochondria to uptake cytosolic calcium. Mitochondria can buffer the cytosolic free calcium and regulate calcium-dependent cellular processes by calcium uptake in the form of inactive precipitates. Impaired Ca2+ retention capacity occurs in stress phenomena associated with energy limitation and even neurodegenerative diseases4,5. Isolated mitochondria or digitonin-permeabilized cells can be used to identify the Ca2+ retention capacity, and the elevated ability to accumulate Ca2+ by isolated mitochondria with the additonal glutamate and malate is not effected by the mitochondrial isolation procedure6. A titrated amount of digitonin should be used to permeabilize the plasma membranes of different cell types. The hexapotassium salt of Ca2+-binding green fluorescent dye, a Ca2+-sensitive cell-impermeant visible light-excitable indicator, has been widely used7. Ca2+-binding green fluorescent dye is a low-affinity indicator and used to show that intracellular free Ca2+ concentrations continue to rise during prolonged (5 min) stimulations8. This method was less sensitive than the radioactive filter technique but was greatly simplified. The additional Ca2+ elevates calcium green fluorescence and the Ca2+ uptake by mitochondria returns the fluorescence to baseline. Sequential additions of Ca2+ were made until the mitochondria failed to uptake extramitochondrial Ca2+ 9. A fluorescence microplate reader can be used to continuously report the calcium green fluorescence.
After Ca2+ accumulation, mitochondria depolarized, released Ca2+ into the medium, and began to swell. Ca2+-triggered mitochondria swelling is used to indicate the mPTP opening. Electron microscopy and the decrease in light absorbance at 540 nm can be used to measure the Ca2+-triggered mitochondrial swelling10,11. Mitochondria volume can be directly determined by forward angle light scattering12, where decreases in the absorbance reflect passive swelling of the mitochondrial matrix.
Here, we illustrate the methodology to examine the mitochondrial Ca2+ retention capacity and Ca2+-triggered mitochondrial swelling in isolated mitochondria from SH-SY5Y cells.

<table>
	<tbody>
		<tr>
			<td>SH-SY5Y cell line</td>
			<td>ATCC (The Global Bioresource Center)</td>
			<td>ATCC Number: CRL-2266</td>
			<td></td>
		</tr>
		<tr>
			<td>Calcium green-5N</td>
			<td>Life Technologies</td>
			<td>c-3737</td>
			<td>Ca2+-binding green fluorescent dye</td>
		</tr>
		<tr>
			<td>complete protease inhibitors</td>
			<td>Roche Molecular Biochemicals</td>
			<td>4693116001</td>
			<td></td>
		</tr>
		<tr>
			<td>glass homogenizer</td>
			<td>Kimble Chase</td>
			<td>9885303002</td>
			<td></td>
		</tr>
		<tr>
			<td>glutamate</td>
			<td>Sigma-Aldrich</td>
			<td>RES5063G-A7</td>
			<td></td>
		</tr>
		<tr>
			<td>malate</td>
			<td>Sigma-Aldrich</td>
			<td>46940-U</td>
			<td></td>
		</tr>
		<tr>
			<td>rotenone</td>
			<td>Sigma-Aldrich</td>
			<td>R8875</td>
			<td></td>
		</tr>
		<tr>
			<td>HEPES</td>
			<td>Sigma-Aldrich</td>
			<td>H3375</td>
			<td></td>
		</tr>
		<tr>
			<td>MgCl2</td>
			<td>Sigma-Aldrich</td>
			<td>00457</td>
			<td></td>
		</tr>
		<tr>
			<td>K2HPO4</td>
			<td>Sigma-Aldrich</td>
			<td>V900050</td>
			<td></td>
		</tr>
		<tr>
			<td>KCl</td>
			<td>Sigma-Aldrich</td>
			<td>P9541</td>
			<td></td>
		</tr>
		<tr>
			<td>CaCl2</td>
			<td>Sigma-Aldrich</td>
			<td>V900266</td>
			<td></td>
		</tr>
		<tr>
			<td>Varioskan flash instruments</td>
			<td>Thermo Scientific</td>
			<td>IC100E</td>
			<td></td>
		</tr>
		<tr>
			<td>Bongkrekate</td>
			<td>Biovision</td>
			<td>1820-100</td>
			<td></td>
		</tr>
		<tr>
			<td>atractyloside</td>
			<td>Sigma-Aldrich</td>
			<td>C4992</td>
			<td></td>
		</tr>
		<tr>
			<td>high-glucose Dulbecco&#8217;s modified Eagle medium</td>
			<td>Hyclone</td>
			<td>SH30022</td>
			<td>4.5 g/L glucose, L-glutamine, without sodium pyruvate</td>
		</tr>
		<tr>
			<td>fetal bovine serum</td>
			<td>Hyclone</td>
			<td>SV30087</td>
			<td></td>
		</tr>
		<tr>
			<td>penicillin</td>
			<td>Sigma-Aldrich</td>
			<td>P3032</td>
			<td></td>
		</tr>
		<tr>
			<td>streptomycin</td>
			<td>Invitrogen</td>
			<td>11860-038</td>
			<td></td>
		</tr>
		<tr>
			<td>BCA assay kit</td>
			<td>Thermo Scientific</td>
			<td>NCI3225CH</td>
			<td></td>
		</tr>
		<tr>
			<td>PBS</td>
			<td>Hyclone</td>
			<td>SH30256.01</td>
			<td></td>
		</tr>
		<tr>
			<td>10 cm cell culture dish</td>
			<td>NEST</td>
			<td>704001</td>
			<td></td>
		</tr>
	</tbody>
</table>

mitochondrial ca2+ retention capacity assay and ca2+-triggered mitochondrial swelling assay

The production of ATP by oxidative phosphorylation is the primary function of mitochondria. Mitochondria in higher eukaryotes also participate in cytosolic Ca2+ buffering, and the ATP production in mitochondrial can be mediated by intramitochondrial free Ca2+ concentration. Ca2+ retention capacity can be regarded as the capability of mitochondria to retain calcium in the mitochondrial matrix. Accumulated intracellular Ca2+ leads to the permeability of the inner mitochondrial membrane, termed the opening of mitochondrial permeability transition pore (mPTP), which leads to the leakage of molecules with a molecular weight less than 1.5 kDa. Ca2+-triggered mitochondria swelling is used to indicate the mPTP opening. Here, we describe two assays to examine the Ca2+ retention capacity and Ca2+-triggered mitochondrial swelling in isolated mitochondria. After certain amounts of Ca2+ are added, all steps can be completed in one day and recorded by a microplate reader. Thus, these two simple and effective assays can be adopted to assess the Ca2+-related mitochondrial functions.

Representative Results of Ca2+ Retention Capacity: 
Results were expressed as fluorescence values. With the additional pulses of Ca2+ (200 nmols/mg mitochondrial protein), the fluorescence increased by double above baseline with the mPTP opening. 5 &#956;M Bongkrekate (BKA), an inhibitor of Ca2+-induced mPTP opening, or 1 &#956;M atractyloside (ATR), an activator of Ca2+-induced mPTP opening, were added in isolated mitochondria. Th...

Watch this Scientific Journal Video about Mitochondrial Ca2+ Retention Capacity Assay and Ca2+-triggered Mitochondrial Swelling Assay at JoVE.com

Mitochondrial Ca2+ Retention Capacity Assay and Ca2+-triggered Mitochondrial Swelling Assay

This protocol aims to describe a method to examine the Ca2+ retention capacity and Ca2+- triggered mitochondrial swelling of isolated mitochondria of SH-SY5Y cells step-by-step.

Mitochondrial Ca2+ Retention Capacity Assay and Ca2+-triggered Mitochondrial Swelling Assay

The production of ATP by oxidative phosphorylation is the primary function of mitochondria. Mitochondria in higher eukaryotes also participate in ...

The overall goal of this experiment is to determine mitochondrial calcium retention capacity in calcium induced mitochondrial swelling. This method can help answer key questions in the study of mitochondrial dysfunction, such as abnormal energy metabolism. The main advantage of this technique is that it's very simple and effective.To begin, seed about three million SH-SY5Y cells per 10 centimeter cell culture dish. Remove the medium and wash the cells with about one milliliter of ice cold PBS in a 10 centimeter cell culture dish three times. Add one milliliter of ice cold PBS into the 10 centimeter cell culture dish and scrape the adherent cells into a new 1.5 milliliter tube.Centrifuge at 800 times G for 10 minutes at four degrees Celsius. During the centrifugation, prepare five milliliters of mitochondrial isolation buffer, supplemented with 50 microliters of protease inhibitor stock solution. Remove the supernatant and re-suspend the pellet with one milliliter of mitochondrial isolation buffer.Incubate the 1.5 milliliter tube on ice for 30 minutes. Then, lyse the suspended cells with a glass homogenizer, up and down manually on ice. Transfer the homogenate into a 1.5 milliliter tube.Then, centrifuge at 1, 000 times G for five minutes at four degrees Celsius to remove the debris. Following centrifugation, transfer the supernatant into a new 1.5 milliliter tube before centrifuging again as before. After transferring the supernatant to a new tube, centrifuge at 14, 000 times G for 15 minutes at four degrees Celsius.Remove the supernatant and re-suspend the pellet containing mitochondria with one milliliter of mitochondrial isolation buffer. Then centrifuge the solution for 15 minutes at 14, 000 times G and four degrees Celsius to precipitate the mitochondria. The resulting mitochondria pellet must be kept on ice and re-suspended in 50 to 100 microliters of potassium chloride media, according to the pellet volume before any assay.Finally, use five microliters of mitochondrial solution to measure the mitochondrial protein concentration by standard BCA assay, measuring OD562 using a plate reader. Prepare the potassium chloride media and add the calcium binding green fluorescent dye to a final concentration of 0.5 micromolar before the experiment. To determine mitochondrial calcium retention capacity, first transfer one milliliter of isolated mitochondria in potassium chloride media containing 0.5 micromolar calcium binding green fluorescent dye to each well of a six well plate.Incubate the mitochondria and the calcium binding green fluorescent dye in the six well plate at room temperature, protected from ambient light for one minute. Following incubation, add four microliter aliquots at the 20 millimolar calcium chloride solution to each well of the six well plate using the automatic dispense setting to introduce 200 nanomoles of calcium per milligram of mitochondrial protein. Use the fluorescent spectrometer to monitor the fluorescence changes every three seconds for two minutes with an excitation wavelength of 506 nanometers and an emission wavelength of 531 nanometers.The plate is equipped with shaking at 600 rpm for three seconds between readings, controlled by software. Add an additional four microliter aliquot of 20 millimolar calcium chloride solution to each well, then monitor the fluorescence changes every three seconds for two minutes. To determine calcium induced mitochondrial swelling, transfer one milliliter of isolated mitochondria in potassium chloride media to each well of a six well plate.Then, add 10 microliters of 20 millimolar calcium chloride aqueous solution to the mitochondrial protein to trigger mitochondrial swelling. Using a microplate reader controlled by software, record the decrease in absorbance every three seconds for 10 minutes at 540 nanometers. Representative results of mitochondrial calcium retention capacity of bongkrekic, an inhibitor of the calcium induced mitochondrial permeability transition pore, or MPTP, opening atractyloside, an activator of the calcium induced MPTP opening and a blank control, are shown here.The capacity on in the bongkrekic treatment is much higher than the atractyloside group, as expected. Representative results of calcium induced mitochondrial swelling of bongkrekic, atractyloside, and the no treatment control are shown here. The decreased absorbance monitored at 540 nanometers indicates the mitochondrial swellings.The results suggest that BKA can inhibit the MPTP opening, while ATR can facilitate the MPTP opening. Once mastered, this technique can be done in five hours if it is performed properly. While attempting this procedure, it's important to remember to keep all the solutions on ice.

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Neuroscience

10.9K vistas.  Qilu Hospital of Shandong University. The overall goal of this experiment is to determine mitochondrial calcium retention capacity in calcium induced mitochondrial swelling. This method can help answer key questions in the study of mitochondrial dysfunction, such as abnormal energy metabolism. The main advantage of this technique is that it's very simple and effective.To begin, seed about three million SH-SY5Y cells per 10 centimeter cell culture dish. Remove the medium and wash the cells with about one milliliter of ice c...