Laboratory of Genetics
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Model Building and Refinement of a Natively Glycosylated HIV-1 Env Protein by High-Resolution Cryoelectron Microscopy.
Structure (London, England : 1993) Oct, 2015 | Pubmed ID: 26388028
Single-particle cryoEM analysis at near-atomic resolution from several thousand asymmetric subunits.
Journal of structural biology Nov, 2015 | Pubmed ID: 26470814
Cryo-EM reveals a novel octameric integrase structure for betaretroviral intasome function.
Nature Feb, 2016 | Pubmed ID: 26887496
Structural Basis for the Activation of IKK1/α.
Cell reports 11, 2016 | Pubmed ID: 27851956
Modular Assembly of the Bacterial Large Ribosomal Subunit.
Cell Dec, 2016 | Pubmed ID: 27912064
Cryo-EM structures and atomic model of the HIV-1 strand transfer complex intasome.
Science (New York, N.Y.) 01, 2017 | Pubmed ID: 28059769
Addressing preferred specimen orientation in single-particle cryo-EM through tilting.
Nature methods Aug, 2017 | Pubmed ID: 28671674
Open and closed structures reveal allostery and pliability in the HIV-1 envelope spike.
Nature 07, 2017 | Pubmed ID: 28700571
Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant.
Nature communications 09, 2018 | Pubmed ID: 30194371
Structural Basis for the RNA-Guided Ribonuclease Activity of CRISPR-Cas13d.
Cell 09, 2018 | Pubmed ID: 30241607
Analysis of discrete local variability and structural covariance in macromolecular assemblies using Cryo-EM and focused classification.
Ultramicroscopy 08, 2019 | Pubmed ID: 30528101
Challenges and opportunities in cryo-EM single-particle analysis.
The Journal of biological chemistry 03, 2019 | Pubmed ID: 30804214
HIV-1 integrase tetramers are the antiviral target of pyridine-based allosteric integrase inhibitors.
eLife 05, 2019 | Pubmed ID: 31120420
Cryo-EM Structures of a Group II Intron Reverse Splicing into DNA.
Cell 07, 2019 | Pubmed ID: 31348888
Mechanism of Filamentation-Induced Allosteric Activation of the SgrAI Endonuclease.
Structure (London, England : 1993) 10, 2019 | Pubmed ID: 31447289
Non-uniformity of projection distributions attenuates resolution in Cryo-EM.
Progress in biophysics and molecular biology 01, 2020 | Pubmed ID: 31525386
SrmB Rescues Trapped Ribosome Assembly Intermediates.
Journal of molecular biology 02, 2020 | Pubmed ID: 31877323
Structural basis for strand-transfer inhibitor binding to HIV intasomes.
Science (New York, N.Y.) 02, 2020 | Pubmed ID: 32001521
HIV-1 Integrase Inhibitors That Are Active against Drug-Resistant Integrase Mutants.
Antimicrobial agents and chemotherapy 08, 2020 | Pubmed ID: 32601157
Structural Biology of HIV Integrase Strand Transfer Inhibitors.
Trends in pharmacological sciences 09, 2020 | Pubmed ID: 32624197
Tools for visualizing and analyzing Fourier space sampling in Cryo-EM.
Progress in biophysics and molecular biology 03, 2021 | Pubmed ID: 32645314
Molecular determinants for dsDNA translocation by the transcription-repair coupling and evolvability factor Mfd.
Nature communications 07, 2020 | Pubmed ID: 32719356
Evaluating Local and Directional Resolution of Cryo-EM Density Maps.
Methods in molecular biology (Clifton, N.J.) , 2021 | Pubmed ID: 33368004
Integrase Strand Transfer Inhibitors Are Effective Anti-HIV Drugs.
Viruses 01, 2021 | Pubmed ID: 33572956
HIV-1 Integrase Inhibitors with Modifications That Affect Their Potencies against Drug Resistant Integrase Mutants.
ACS infectious diseases 06, 2021 | Pubmed ID: 33686850
Retroviral integrase: Structure, mechanism, and inhibition.
The Enzymes , 2021 | Pubmed ID: 34861940
Quantitative mining of compositional heterogeneity in cryo-EM datasets of ribosome assembly intermediates.
Structure (London, England : 1993) 04, 2022 | Pubmed ID: 34990602
Pretransition state and apo structures of the filament-forming enzyme SgrAI elucidate mechanisms of activation and substrate specificity.
The Journal of biological chemistry 04, 2022 | Pubmed ID: 35202658
Multivalent interactions essential for lentiviral integrase function.
Nature communications 05, 2022 | Pubmed ID: 35504909
Sriram Aiyer1,
Timothy S. Strutzenberg1,
Marianne E. Bowman2,
Joseph P. Noel2,3,
Dmitry Lyumkis1,4,5
1Laboratory of Genetics, The Salk Institute for Biological Studies,
2Jack H. Skirball Center for Chemical Biology and Proteomics, The Salk Institute for Biological Studies,
3Department of Chemistry and Biochemistry, University of California San Diego,
4Graduate School of Biological Sciences, Section of Molecular Biology, University of California San Diego,
5Department of Integrative Structural and Computational Biology, The Scripps Research Institute