Howard Hughes Medical Institute,
Department of Neurobiology,
Howard Hughes Medical Institute, Department of Neurobiology
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Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species.
Genome biology , 2014 | Pubmed ID: 25496777
Evaluating functional network inference using simulations of complex biological systems.
Bioinformatics (Oxford, England) , 2002 | Pubmed ID: 12169550
Induction of hippocampal long-term potentiation during waking leads to increased extrahippocampal zif-268 expression during ensuing rapid-eye-movement sleep.
The Journal of neuroscience : the official journal of the Society for Neuroscience Dec, 2002 | Pubmed ID: 12486186
Influence of network topology and data collection on network inference.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing , 2003 | Pubmed ID: 12603026
Analysis of the mouse transcriptome for genes involved in the function of the nervous system.
Genome research Jun, 2003 | Pubmed ID: 12819138
Revised nomenclature for avian telencephalon and some related brainstem nuclei.
The Journal of comparative neurology May, 2004 | Pubmed ID: 15116397
Differential expression of glutamate receptors in avian neural pathways for learned vocalization.
The Journal of comparative neurology Aug, 2004 | Pubmed ID: 15236466
Advances to Bayesian network inference for generating causal networks from observational biological data.
Bioinformatics (Oxford, England) Dec, 2004 | Pubmed ID: 15284094
Songbirds and the revised avian brain nomenclature.
Annals of the New York Academy of Sciences Jun, 2004 | Pubmed ID: 15313771
Learned birdsong and the neurobiology of human language.
Annals of the New York Academy of Sciences Jun, 2004 | Pubmed ID: 15313804
Avian brains and a new understanding of vertebrate brain evolution.
Nature reviews. Neuroscience Feb, 2005 | Pubmed ID: 15685220
Night-vision brain area in migratory songbirds.
Proceedings of the National Academy of Sciences of the United States of America Jun, 2005 | Pubmed ID: 15928090
Rapid behavioral and genomic responses to social opportunity.
PLoS biology Nov, 2005 | Pubmed ID: 16216088
Social context-dependent singing-regulated dopamine.
The Journal of neuroscience : the official journal of the Society for Neuroscience Aug, 2006 | Pubmed ID: 16943558
A molecular neuroethological approach for identifying and characterizing a cascade of behaviorally regulated genes.
Proceedings of the National Academy of Sciences of the United States of America Oct, 2006 | Pubmed ID: 17018643
Computational inference of neural information flow networks.
PLoS computational biology Nov, 2006 | Pubmed ID: 17121460
Lateralized activation of Cluster N in the brains of migratory songbirds.
The European journal of neuroscience Feb, 2007 | Pubmed ID: 17331212
The pallial basal ganglia pathway modulates the behaviorally driven gene expression of the motor pathway.
The European journal of neuroscience Apr, 2007 | Pubmed ID: 17419760
Role of the midbrain dopaminergic system in modulation of vocal brain activation by social context.
The European journal of neuroscience Jun, 2007 | Pubmed ID: 17553009
Molecular mapping of movement-associated areas in the avian brain: a motor theory for vocal learning origin.
PloS one , 2008 | Pubmed ID: 18335043
Profiling of experience-regulated proteins in the songbird auditory forebrain using quantitative proteomics.
The European journal of neuroscience Mar, 2008 | Pubmed ID: 18364021
VOCALIZATIONS AND ASSOCIATED BEHAVIORS OF THE SOMBRE HUMMINGBIRD (APHANTOCHROA CIRRHOCHLORIS) AND THE RUFOUS-BREASTED HERMIT (GLAUCIS HIRSUTUS).
The Auk Oct, 2006 | Pubmed ID: 18802498
Assessing visual requirements for social context-dependent activation of the songbird song system.
Proceedings. Biological sciences / The Royal Society Jan, 2009 | Pubmed ID: 18826930
Early onset of deafening-induced song deterioration and differential requirements of the pallial-basal ganglia vocal pathway.
The European journal of neuroscience Dec, 2008 | Pubmed ID: 19087177
The Avian Brain Nomenclature Forum: Terminology for a New Century in Comparative Neuroanatomy.
The Journal of comparative neurology , 2004 | Pubmed ID: 19626136
Neural systems for vocal learning in birds and humans: a synopsis.
Journal of ornithology / DO-G Dec, 2007 | Pubmed ID: 19684872
Dopamine receptors in a songbird brain.
The Journal of comparative neurology Mar, 2010 | Pubmed ID: 20058221
Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species.
Molecular ecology Mar, 2010 | Pubmed ID: 20331785
The genome of a songbird.
Nature Apr, 2010 | Pubmed ID: 20360741
The dusp1 immediate early gene is regulated by natural stimuli predominantly in sensory input neurons.
The Journal of comparative neurology Jul, 2010 | Pubmed ID: 20506480
Obtaining mtDNA genomes from next-generation transcriptome sequencing: a case study on the basal Passerida (Aves: Passeriformes) phylogeny.
Molecular phylogenetics and evolution Oct, 2010 | Pubmed ID: 20601014
Night-time neuronal activation of Cluster N in a day- and night-migrating songbird.
The European journal of neuroscience Aug, 2010 | Pubmed ID: 20618826
Microproteomics: quantitative proteomic profiling of small numbers of laser-captured cells.
Cold Spring Harbor protocols Feb, 2011 | Pubmed ID: 21285273
Dynamic evolution of base composition: causes and consequences in avian phylogenomics.
Molecular biology and evolution Aug, 2011 | Pubmed ID: 21393604
Convergent differential regulation of parvalbumin in the brains of vocal learners.
PloS one , 2012 | Pubmed ID: 22238614
Dopamine regulation of human speech and bird song: A critical review.
Brain and language Jan, 2012 | Pubmed ID: 22284300
Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.
Genome biology Jan, 2012 | Pubmed ID: 22293439
Hybrid error correction and de novo assembly of single-molecule sequencing reads.
Nature biotechnology Jul, 2012 | Pubmed ID: 22750884
Interspecies avian brain chimeras reveal that large brain size differences are influenced by cell-interdependent processes.
PloS one , 2012 | Pubmed ID: 22860132
Specialized motor-driven dusp1 expression in the song systems of multiple lineages of vocal learning birds.
PloS one , 2012 | Pubmed ID: 22876306
Birds, primates, and spoken language origins: behavioral phenotypes and neurobiological substrates.
Frontiers in evolutionary neuroscience , 2012 | Pubmed ID: 22912615
Of mice, birds, and men: the mouse ultrasonic song system has some features similar to humans and song-learning birds.
PloS one , 2012 | Pubmed ID: 23071596
Mouse vocal communication system: are ultrasounds learned or innate?
Brain and language Jan, 2013 | Pubmed ID: 23295209
Global view of the functional molecular organization of the avian cerebrum: mirror images and functional columns.
The Journal of comparative neurology Nov, 2013 | Pubmed ID: 23818122
Molecular profiling of the developing avian telencephalon: regional timing and brain subdivision continuities.
The Journal of comparative neurology Nov, 2013 | Pubmed ID: 23818174
Rudimentary substrates for vocal learning in a suboscine.
Nature communications , 2013 | Pubmed ID: 23823977
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.
GigaScience , 2013 | Pubmed ID: 23870653
Different mechanisms are responsible for dishabituation of electrophysiological auditory responses to a change in acoustic identity than to a change in stimulus location.
Neurobiology of learning and memory Nov, 2013 | Pubmed ID: 23999220
Mammalian genes induce partially reprogrammed pluripotent stem cells in non-mammalian vertebrate and invertebrate species.
eLife , 2013 | Pubmed ID: 24015354
NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species.
The Journal of comparative neurology May, 2014 | Pubmed ID: 24596113
NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species.
Brain, behavior and evolution , 2014 | Pubmed ID: 24603302
High-coverage sequencing and annotated assemblies of the budgerigar genome.
GigaScience , 2014 | Pubmed ID: 25061512
Basal ganglia function, stuttering, sequencing, and repair in adult songbirds.
Scientific reports , 2014 | Pubmed ID: 25307086
Convergent differential regulation of SLIT-ROBO axon guidance genes in the brains of vocal learners.
The Journal of comparative neurology Apr, 2015 | Pubmed ID: 25424606
Comparative genomics reveals molecular features unique to the songbird lineage.
BMC genomics , 2014 | Pubmed ID: 25494627
Genomic resources for the endangered Hawaiian honeycreepers.
BMC genomics , 2014 | Pubmed ID: 25496081
Dynamic evolution of the alpha (α) and beta (β) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles.
BMC evolutionary biology , 2014 | Pubmed ID: 25496280
Low frequency of paleoviral infiltration across the avian phylogeny.
Genome biology , 2014 | Pubmed ID: 25496498
Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition.
Genome biology , 2014 | Pubmed ID: 25496599
Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor.
BMC genomics , 2014 | Pubmed ID: 25496766
Avian genomes. A flock of genomes. Introduction.
Science (New York, N.Y.) Dec, 2014 | Pubmed ID: 25504710
Comparative genomics reveals insights into avian genome evolution and adaptation.
Science (New York, N.Y.) Dec, 2014 | Pubmed ID: 25504712
Whole-genome analyses resolve early branches in the tree of life of modern birds.
Science (New York, N.Y.) Dec, 2014 | Pubmed ID: 25504713
Complex evolutionary trajectories of sex chromosomes across bird taxa.
Science (New York, N.Y.) Dec, 2014 | Pubmed ID: 25504727
Evidence for a single loss of mineralized teeth in the common avian ancestor.
Science (New York, N.Y.) Dec, 2014 | Pubmed ID: 25504730
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.
Science (New York, N.Y.) Dec, 2014 | Pubmed ID: 25504731
Core and region-enriched networks of behaviorally regulated genes and the singing genome.
Science (New York, N.Y.) Dec, 2014 | Pubmed ID: 25504732
Convergent transcriptional specializations in the brains of humans and song-learning birds.
Science (New York, N.Y.) Dec, 2014 | Pubmed ID: 25504733
The basal ganglia within a cognitive system in birds and mammals.
The Behavioral and brain sciences Dec, 2014 | Pubmed ID: 25514958
Evolutionary genomics and adaptive evolution of the Hedgehog gene family (Shh, Ihh and Dhh) in vertebrates.
PloS one , 2014 | Pubmed ID: 25549322
Maintenance and neuronal differentiation of chicken induced pluripotent stem-like cells.
Stem cells international , 2014 | Pubmed ID: 25610469
Comparative genomic data of the Avian Phylogenomics Project.
GigaScience , 2014 | Pubmed ID: 25671091
Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment.
GigaScience , 2014 | Pubmed ID: 25671092
Phylogenomic analyses data of the avian phylogenomics project.
GigaScience , 2015 | Pubmed ID: 25741440
Male mice song syntax depends on social contexts and influences female preferences.
Frontiers in behavioral neuroscience , 2015 | Pubmed ID: 25883559
Genomics: Bird sequencing project takes off.
Nature Jun, 2015 | Pubmed ID: 26040883
Core and Shell Song Systems Unique to the Parrot Brain.
PloS one , 2015 | Pubmed ID: 26107173
A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis.
BMC evolutionary biology , 2015 | Pubmed ID: 26123414
Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida.
Molecular biology and evolution Jul, 2015 | Pubmed ID: 26219582