Department of Biology
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Replication fork stalling at natural impediments.
Microbiology and molecular biology reviews : MMBR Mar, 2007 | Pubmed ID: 17347517
Expandable DNA repeats and human disease.
Nature Jun, 2007 | Pubmed ID: 17581576
Discovery of alternative DNA structures: a heroic decade (1979-1989).
Frontiers in bioscience : a journal and virtual library Jan, 2008 | Pubmed ID: 17981612
Replication stalling at unstable inverted repeats: interplay between DNA hairpins and fork stabilizing proteins.
Proceedings of the National Academy of Sciences of the United States of America Jul, 2008 | Pubmed ID: 18632578
A tribute to Evgenii V. Ananiev, 1947-2008.
PLoS genetics Aug, 2008 | Pubmed ID: 18769503
Chromosome fragility at GAA tracts in yeast depends on repeat orientation and requires mismatch repair.
The EMBO journal Nov, 2008 | Pubmed ID: 18833189
Replisome stalling and stabilization at CGG repeats, which are responsible for chromosomal fragility.
Nature structural & molecular biology Feb, 2009 | Pubmed ID: 19136957
Human mutation rate associated with DNA replication timing.
Nature genetics Apr, 2009 | Pubmed ID: 19287383
Checkpoint responses to unusual structures formed by DNA repeats.
Molecular carcinogenesis Apr, 2009 | Pubmed ID: 19306277
Large-scale expansions of Friedreich's ataxia GAA repeats in yeast.
Molecular cell Jul, 2009 | Pubmed ID: 19595718
Mechanisms and implications of transcription blockage by guanine-rich DNA sequences.
Proceedings of the National Academy of Sciences of the United States of America Jul, 2010 | Pubmed ID: 20616059
Getting to the core of repeat expansions by cell reprogramming.
Cell stem cell Nov, 2010 | Pubmed ID: 21040891
Friedreich's ataxia (GAA)n•(TTC)n repeats strongly stimulate mitotic crossovers in Saccharomyces cerevisae.
PLoS genetics Jan, 2011 | Pubmed ID: 21249181
Expansions, contractions, and fragility of the spinocerebellar ataxia type 10 pentanucleotide repeat in yeast.
Proceedings of the National Academy of Sciences of the United States of America Feb, 2011 | Pubmed ID: 21282659
Overcoming natural replication barriers: differential helicase requirements.
Nucleic acids research Feb, 2012 | Pubmed ID: 21984413
Effects of Friedreich's ataxia GAA repeats on DNA replication in mammalian cells.
Nucleic acids research May, 2012 | Pubmed ID: 22262734
A Renaissance man: in memoriam of Jon Widom (1955-2011).
Journal of biomolecular structure & dynamics Oct, 2011 | Pubmed ID: 22783898
Genome-wide screen identifies pathways that govern GAA/TTC repeat fragility and expansions in dividing and nondividing yeast cells.
Molecular cell Oct, 2012 | Pubmed ID: 22959270
Role of DNA polymerases in repeat-mediated genome instability.
Cell reports Nov, 2012 | Pubmed ID: 23142667
Transcription blockage by homopurine DNA sequences: role of sequence composition and single-strand breaks.
Nucleic acids research Feb, 2013 | Pubmed ID: 23275544
DNA replication: driving past four-stranded snags.
Nature May, 2013 | Pubmed ID: 23657255
The balancing act of DNA repeat expansions.
Current opinion in genetics & development Jun, 2013 | Pubmed ID: 23725800
Genome rearrangements caused by interstitial telomeric sequences in yeast.
Proceedings of the National Academy of Sciences of the United States of America Dec, 2013 | Pubmed ID: 24191060
To switch or not to switch: at the origin of repeat expansion disease.
Molecular cell Jan, 2014 | Pubmed ID: 24411078
Coupling transcriptional state to large-scale repeat expansions in yeast.
Cell reports Dec, 2014 | Pubmed ID: 25464841
The hidden side of unstable DNA repeats: Mutagenesis at a distance.
DNA repair Aug, 2015 | Pubmed ID: 25956860
Transcription blockage by stable H-DNA analogs in vitro.
Nucleic acids research Aug, 2015 | Pubmed ID: 26101261
Putting the Brakes on Huntington Disease in a Mouse Experimental Model.
PLoS genetics Aug, 2015 | Pubmed ID: 26247607
Expansion of Interstitial Telomeric Sequences in Yeast.
Cell reports Nov, 2015 | Pubmed ID: 26586439
The role of break-induced replication in large-scale expansions of (CAG)/(CTG) repeats.
Nature structural & molecular biology Jan, 2017 | Pubmed ID: 27918542
Phosphate steering by Flap Endonuclease 1 promotes 5'-flap specificity and incision to prevent genome instability.
Nature communications Jun, 2017 | Pubmed ID: 28653660
Precarious maintenance of simple DNA repeats in eukaryotes.
BioEssays : news and reviews in molecular, cellular and developmental biology Sep, 2017 | Pubmed ID: 28703879
A Defective mRNA Cleavage and Polyadenylation Complex Facilitates Expansions of Transcribed (GAA) Repeats Associated with Friedreich's Ataxia.
Cell reports Sep, 2017 | Pubmed ID: 28877480
Quantitative Analysis of the Rates for Repeat-Mediated Genome Instability in a Yeast Experimental System.
Methods in molecular biology (Clifton, N.J.) , 2018 | Pubmed ID: 29043640
Nanopore sequencing of complex genomic rearrangements in yeast reveals mechanisms of repeat-mediated double-strand break repair.
Genome research Dec, 2017 | Pubmed ID: 29113982
RNA-DNA hybrids promote the expansion of Friedreich's ataxia (GAA)n repeats via break-induced replication.
Nucleic acids research Apr, 2018 | Pubmed ID: 29447396
Cis- and Trans-Modifiers of Repeat Expansions: Blending Model Systems with Human Genetics.
Trends in genetics : TIG Jun, 2018 | Pubmed ID: 29567336
Mechanisms of genetic instability caused by (CGG) repeats in an experimental mammalian system.
Nature structural & molecular biology Aug, 2018 | Pubmed ID: 30061600
Mrc1 and Tof1 prevent fragility and instability at long CAG repeats by their fork stabilizing function.
Nucleic acids research Jan, 2019 | Pubmed ID: 30476303
Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways.
Microbial cell (Graz, Austria) Jan, 2019 | Pubmed ID: 30652105
At the Beginning of the End and in the Middle of the Beginning: Structure and Maintenance of Telomeric DNA Repeats and Interstitial Telomeric Sequences.
Genes Feb, 2019 | Pubmed ID: 30764567
Experimental System to Study Instability of (CGG) Repeats in Cultured Mammalian Cells.
Methods in molecular biology (Clifton, N.J.) , 2020 | Pubmed ID: 31586346
Large-scale contractions of Friedreich's ataxia GAA repeats in yeast occur during DNA replication due to their triplex-forming ability.
Proceedings of the National Academy of Sciences of the United States of America Jan, 2020 | Pubmed ID: 31911468
On the wrong DNA track: Molecular mechanisms of repeat-mediated genome instability.
The Journal of biological chemistry Mar, 2020 | Pubmed ID: 32060097
Replication-independent instability of Friedreich's ataxia GAA repeats during chronological aging.
Proceedings of the National Academy of Sciences of the United States of America Feb, 2021 | Pubmed ID: 33495349
Rad9-mediated checkpoint activation is responsible for elevated expansions of GAA repeats in CST-deficient yeast.
Genetics Oct, 2021 | Pubmed ID: 34849883
Characteristics and possible mechanisms of formation of microinversions distinguishing human and chimpanzee genomes.
Scientific reports Jan, 2022 | Pubmed ID: 35022450
Partners in crime: Tbf1 and Vid22 promote expansions of long human telomeric repeats at an interstitial chromosome position in yeast.
PNAS nexus Jul, 2022 | Pubmed ID: 35832866
Replication dependent and independent mechanisms of GAA repeat instability.
DNA repair Oct, 2022 | Pubmed ID: 35952488
S1-END-seq reveals DNA secondary structures in human cells.
Molecular cell Oct, 2022 | Pubmed ID: 36075220
Shuffling the yeast genome using CRISPR/Cas9-generated DSBs that target the transposable Ty1 elements.
PLoS genetics Jan, 2023 | Pubmed ID: 36701275
Large-scale expansions of Friedreich's ataxia GAA•TTC repeats in an experimental human system: role of DNA replication and prevention by LNA-DNA oligonucleotides and PNA oligomers.
Nucleic acids research Sep, 2023 | Pubmed ID: 37216608
Massive contractions of Myotonic Dystrophy Type 2-associated CCTG tetranucleotide repeats occur via double strand break repair with distinct requirements for helicases.
bioRxiv : the preprint server for biology Jul, 2023 | Pubmed ID: 37461657
Pathogenic CANVAS (AAGGG) repeats stall DNA replication due to the formation of alternative DNA structures.
bioRxiv : the preprint server for biology Jul, 2023 | Pubmed ID: 37546920
Detection of alternative DNA structures and its implications for human disease.
Molecular cell Oct, 2023 | Pubmed ID: 37863029
Massive contractions of myotonic dystrophy type 2-associated CCTG tetranucleotide repeats occur via double-strand break repair with distinct requirements for DNA helicases.
G3 (Bethesda, Md.) Feb, 2024 | Pubmed ID: 37950892
Pathogenic CANVAS (AAGGG)n repeats stall DNA replication due to the formation of alternative DNA structures.
Nucleic acids research May, 2024 | Pubmed ID: 38381906