Center for biotechnology and Informatics
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Design and applications of a multimodality image data warehouse framework.
Journal of the American Medical Informatics Association : JAMIA May-Jun, 2002 | Pubmed ID: 11971885
Workflow-enabled distributed component-based information architecture for digital medical imaging enterprises.
IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society Sep, 2003 | Pubmed ID: 14518730
A neuroinformatics database system for disease-oriented neuroimaging research.
Academic radiology Mar, 2004 | Pubmed ID: 15035525
Towards effective and rewarding data sharing.
Neuroinformatics , 2003 | Pubmed ID: 15046250
A web-based federated neuroinformatics model for surgical planning and clinical research applications in epilepsy.
Neuroinformatics , 2004 | Pubmed ID: 15067170
Cancer classification and prediction using logistic regression with Bayesian gene selection.
Journal of biomedical informatics Aug, 2004 | Pubmed ID: 15465478
DBMap: a space-conscious data visualization and knowledge discovery framework for biomedical data warehouse.
IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society Sep, 2004 | Pubmed ID: 15484440
A computerized cellular imaging system for high content analysis in Monastrol suppressor screens.
Journal of biomedical informatics Apr, 2006 | Pubmed ID: 16011909
Multiclass cancer classification by using fuzzy support vector machine and binary decision tree with gene selection.
Journal of biomedicine & biotechnology Jun, 2005 | Pubmed ID: 16046822
Parameters selection in gene selection using Gaussian kernel support vector machines by genetic algorithm.
Journal of Zhejiang University. Science. B Oct, 2005 | Pubmed ID: 16187409
Computerized image analysis for quantitative neuronal phenotyping in zebrafish.
Journal of neuroscience methods Jun, 2006 | Pubmed ID: 16364449
76-space analysis of grey matter diffusivity: methods and applications.
NeuroImage May, 2006 | Pubmed ID: 16434215
Protein structure similarity from Principle Component Correlation analysis.
BMC bioinformatics , 2006 | Pubmed ID: 16436213
Boosting alternating decision trees modeling of disease trait information.
BMC genetics , 2005 | Pubmed ID: 16451591
Zebrafish lacking Alzheimer presenilin enhancer 2 (Pen-2) demonstrate excessive p53-dependent apoptosis and neuronal loss.
Journal of neurochemistry Mar, 2006 | Pubmed ID: 16464238
Mutual information-based feature selection in studying perturbation of dendritic structure caused by TSC2 inactivation.
Neuroinformatics , 2006 | Pubmed ID: 16595860
Bayesian variable selection for gene expression modeling with regulatory motif binding sites in neuroinflammatory events.
Neuroinformatics , 2006 | Pubmed ID: 16595861
Automated segmentation, classification, and tracking of cancer cell nuclei in time-lapse microscopy.
IEEE transactions on bio-medical engineering Apr, 2006 | Pubmed ID: 16602586
Automated neurite labeling and analysis in fluorescence microscopy images.
Cytometry. Part A : the journal of the International Society for Analytical Cytology Jun, 2006 | Pubmed ID: 16680708
76-space analysis of grey matter diffusivity: methods and applications.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2005 | Pubmed ID: 16685840
Towards automated cellular image segmentation for RNAi genome-wide screening.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2005 | Pubmed ID: 16685930
Repulsive force based snake model to segment and track neuronal axons in 3D microscopy image stacks.
NeuroImage Oct, 2006 | Pubmed ID: 16861006
A novel tracing algorithm for high throughput imaging Screening of neuron-based assays.
Journal of neuroscience methods Feb, 2007 | Pubmed ID: 16987551
Context based mixture model for cell phase identification in automated fluorescence microscopy.
BMC bioinformatics , 2007 | Pubmed ID: 17263881
Automated neurite extraction using dynamic programming for high-throughput screening of neuron-based assays.
NeuroImage May, 2007 | Pubmed ID: 17363284
Detection of molecular particles in live cells via machine learning.
Cytometry. Part A : the journal of the International Society for Analytical Cytology Aug, 2007 | Pubmed ID: 17431884
Characteristic of hypothalamic kisspeptin expression in the pubertal development of precocious female rats.
Neuroscience letters Jun, 2007 | Pubmed ID: 17442487
An automated feedback system with the hybrid model of scoring and classification for solving over-segmentation problems in RNAi high content screening.
Journal of microscopy May, 2007 | Pubmed ID: 17444941
Dendritic spine detection using curvilinear structure detector and LDA classifier.
NeuroImage Jun, 2007 | Pubmed ID: 17448688
Tracking molecular particles in live cells using fuzzy rule-based system.
Cytometry. Part A : the journal of the International Society for Analytical Cytology Aug, 2007 | Pubmed ID: 17542029
Automatic dendritic spine analysis in two-photon laser scanning microscopy images.
Cytometry. Part A : the journal of the International Society for Analytical Cytology Oct, 2007 | Pubmed ID: 17654649
Detection of blob objects in microscopic zebrafish images based on gradient vector diffusion.
Cytometry. Part A : the journal of the International Society for Analytical Cytology Oct, 2007 | Pubmed ID: 17654652
3D cell nuclei segmentation based on gradient flow tracking.
BMC cell biology , 2007 | Pubmed ID: 17784958
Brain tissue segmentation based on DTI data.
NeuroImage Oct, 2007 | Pubmed ID: 17804258
Automated axon tracking of 3D confocal laser scanning microscopy images using guided probabilistic region merging.
Neuroinformatics , 2007 | Pubmed ID: 17917130
High content image analysis for human H4 neuroglioma cells exposed to CuO nanoparticles.
BMC biotechnology , 2007 | Pubmed ID: 17925027
Comparison of reversible-jump Markov-chain-Monte-Carlo learning approach with other methods for missing enzyme identification.
Journal of biomedical informatics Apr, 2008 | Pubmed ID: 17950040
Least-square conformal brain mapping with spring energy.
Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society Dec, 2007 | Pubmed ID: 17950575
Novel cell segmentation and online SVM for cell cycle phase identification in automated microscopy.
Bioinformatics (Oxford, England) Jan, 2008 | Pubmed ID: 17989093
ZFIQ: a software package for zebrafish biology.
Bioinformatics (Oxford, England) Feb, 2008 | Pubmed ID: 18089619
Cellular phenotype recognition for high-content RNA interference genome-wide screening.
Journal of biomolecular screening Jan, 2008 | Pubmed ID: 18227224
An automated method for cell detection in zebrafish.
Neuroinformatics , 2008 | Pubmed ID: 18288618
Reconstruction of central cortical surface from brain MRI images: method and application.
NeuroImage Apr, 2008 | Pubmed ID: 18289879
MR analysis of regional brain volume in adolescent idiopathic scoliosis: neurological manifestation of a systemic disease.
Journal of magnetic resonance imaging : JMRI Apr, 2008 | Pubmed ID: 18302230
3D Axon structure extraction and analysis in confocal fluorescence microscopy images.
Neural computation Aug, 2008 | Pubmed ID: 18336075
Using nonlinear diffusion and mean shift to detect and connect cross-sections of axons in 3D optical microscopy images.
Medical image analysis Dec, 2008 | Pubmed ID: 18440853
A quantitative study of factors affecting in vivo bioluminescence imaging.
Luminescence : the journal of biological and chemical luminescence Sep-Oct, 2008 | Pubmed ID: 18452141
Workflow and methods of high-content time-lapse analysis for quantifying intracellular calcium signals.
Neuroinformatics , 2008 | Pubmed ID: 18506641
MeCP2, a key contributor to neurological disease, activates and represses transcription.
Science (New York, N.Y.) May, 2008 | Pubmed ID: 18511691
Using iterative cluster merging with improved gap statistics to perform online phenotype discovery in the context of high-throughput RNAi screens.
BMC bioinformatics , 2008 | Pubmed ID: 18534020
An image score inference system for RNAi genome-wide screening based on fuzzy mixture regression modeling.
Journal of biomedical informatics Feb, 2009 | Pubmed ID: 18547870
Reversible jump MCMC approach for peak identification for stroke SELDI mass spectrometry using mixture model.
Bioinformatics (Oxford, England) Jul, 2008 | Pubmed ID: 18586741
The knowledge-integrated network biomarkers discovery for major adverse cardiac events.
Journal of proteome research Sep, 2008 | Pubmed ID: 18665624
Registration of 3-D CT and 2-D flat images of mouse via affine transformation.
IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society Sep, 2008 | Pubmed ID: 18779071
Computational prediction models for early detection of risk of cardiovascular events using mass spectrometry data.
IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society Sep, 2008 | Pubmed ID: 18779078
Robust 3D reconstruction and identification of dendritic spines from optical microscopy imaging.
Medical image analysis Feb, 2009 | Pubmed ID: 18819835
Conditional random pattern algorithm for LOH inference and segmentation.
Bioinformatics (Oxford, England) Jan, 2009 | Pubmed ID: 18974074
A novel method for cortical sulcal fundi extraction.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2008 | Pubmed ID: 18979757
Multiple distinct clones may co-exist in different lineages in myelodysplastic syndromes.
Leukemia research Jun, 2009 | Pubmed ID: 19084271
Improved residue function and reduced flow dependence in MR perfusion using least-absolute-deviation regularization.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine Feb, 2009 | Pubmed ID: 19161133
A screening platform for glioma growth and invasion using bioluminescence imaging. Laboratory investigation.
Journal of neurosurgery Aug, 2009 | Pubmed ID: 19199503
Introduction to the special issue of "Advances in Molecular Imaging".
European journal of radiology May, 2009 | Pubmed ID: 19261413
A novel cell segmentation method and cell phase identification using Markov model.
IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society Mar, 2009 | Pubmed ID: 19272857
Identification of biomarkers for risk stratification of cardiovascular events using genetic algorithm with recursive local floating search.
Proteomics Apr, 2009 | Pubmed ID: 19337989
Pattern-selection based power analysis and discrimination of low- and high-grade myelodysplastic syndromes study using SNP arrays.
PloS one , 2009 | Pubmed ID: 19352488
An automated pipeline for dendrite spine detection and tracking of 3D optical microscopy neuron images of in vivo mouse models.
Neuroinformatics Jun, 2009 | Pubmed ID: 19434521
Automated brain tumor segmentation using spatial accuracy-weighted hidden Markov Random Field.
Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society Sep, 2009 | Pubmed ID: 19446435
生物发光成像显示由阿尔茨海默病中的淀粉样蛋白抑制肿瘤细胞增殖。
Cancer cell international , 2009 | Pubmed ID: 19480719
Conference Scene: Wake-up call for the engineering and biomedical science communities in nanomedicine.
Nanomedicine (London, England) Jul, 2009 | Pubmed ID: 19572817
Multiple nuclei tracking using integer programming for quantitative cancer cell cycle analysis.
IEEE transactions on medical imaging Jan, 2010 | Pubmed ID: 19643704
A novel peak detection approach with chemical noise removal using short-time FFT for prOTOF MS data.
Proteomics Aug, 2009 | Pubmed ID: 19681055
A hybrid approach to automatic clustering of white matter fibers.
NeuroImage Jan, 2010 | Pubmed ID: 19683061
Simultaneous consideration of spatial deformation and tensor orientation in diffusion tensor image registration using local fast marching patterns.
Information processing in medical imaging : proceedings of the ... conference , 2009 | Pubmed ID: 19694253
Joint registration and segmentation of serial lung CT images for image-guided lung cancer diagnosis and therapy.
Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society Jan, 2010 | Pubmed ID: 19709855
Computational Systems Bioinformatics and Bioimaging for Pathway Analysis and Drug Screening.
Proceedings of the IEEE. Institute of Electrical and Electronics Engineers Aug, 2008 | Pubmed ID: 20011613
A NOVEL SURFACE-BASED GEOMETRIC APPROACH FOR 3D DENDRITIC SPINE DETECTION FROM MULTI-PHOTON EXCITATION MICROSCOPY IMAGES.
Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging Jun, 2009 | Pubmed ID: 20046805
Computer-assisted quantitative evaluation of therapeutic responses for lymphoma using serial PET/CT imaging.
Academic radiology Apr, 2010 | Pubmed ID: 20060747
A neurocomputational method for fully automated 3D dendritic spine detection and segmentation of medium-sized spiny neurons.
NeuroImage May, 2010 | Pubmed ID: 20100579
Treating triple-negative breast cancer by a combination of rapamycin and cyclophosphamide: an in vivo bioluminescence imaging study.
European journal of cancer (Oxford, England : 1990) Apr, 2010 | Pubmed ID: 20156674
Online Phenotype Discovery based on Minimum Classification Error Model.
Pattern recognition Apr, 2009 | Pubmed ID: 20161245
Catch the wave--nanotechnology, the future is now.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society Jan-Feb, 2010 | Pubmed ID: 20209671
A local fast marching-based diffusion tensor image registration algorithm by simultaneously considering spatial deformation and tensor orientation.
NeuroImage Aug, 2010 | Pubmed ID: 20382233
Conditional random pattern model for copy number aberration detection.
BMC bioinformatics , 2010 | Pubmed ID: 20412592
Cell segmentation using front vector flow guided active contours.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2009 | Pubmed ID: 20426162
An automatic and robust algorithm of reestablishment of digital dental occlusion.
IEEE transactions on medical imaging Sep, 2010 | Pubmed ID: 20529735
Reconstruction of the neuromuscular junction connectome.
Bioinformatics (Oxford, England) Jun, 2010 | Pubmed ID: 20529938
A computational framework for studying neuron morphology from in vitro high content neuron-based screening.
Journal of neuroscience methods Jul, 2010 | Pubmed ID: 20580743
INTEGRATING MULTI-SCALE BLOB/CURVILINEAR DETECTOR TECHNIQUES AND MULTI-LEVEL SETS FOR AUTOMATED SEGMENTATION OF STEM CELL IMAGES.
Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging , 2009 | Pubmed ID: 20585412
An Image Based System Biology Approach for Alzheimer's Disease Pathway Analysis.
IEEE/NIH Life Science Systems and Applications Workshop. IEEE/NIH Life Science Systems and Applications Workshop Apr, 2009 | Pubmed ID: 20585413
Oriented Markov random field based dendritic spine segmentation for fluorescence microscopy images.
Neuroinformatics Oct, 2010 | Pubmed ID: 20585900
Delivery of picosecond lasers in multimode fibers for coherent anti-Stokes Raman scattering imaging.
Optics express Jun, 2010 | Pubmed ID: 20588430
Cortical and frontal atrophy are associated with cognitive impairment in age-related confluent white-matter lesion.
Journal of neurology, neurosurgery, and psychiatry Jan, 2011 | Pubmed ID: 20826875
Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces.
BMC systems biology , 2010 | Pubmed ID: 20840733
Image-based chemical screening identifies drug efflux inhibitors in lung cancer cells.
Cancer research Oct, 2010 | Pubmed ID: 20841476
Online 4-D CT estimation for patient-specific respiratory motion based on real-time breathing signals.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2010 | Pubmed ID: 20879424
Motion artifact correction of multi-photon imaging of awake mice models using speed embedded HMM.
Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention , 2010 | Pubmed ID: 20879434
Diffusion tensor-based fast marching for modeling human brain connectivity network.
Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society Apr, 2011 | Pubmed ID: 21035304
Using genetic and clinical factors to predict tacrolimus dose in renal transplant recipients.
Pharmacogenomics Oct, 2010 | Pubmed ID: 21047202
A global spatial similarity optimization scheme to track large numbers of dendritic spines in time-lapse confocal microscopy.
IEEE transactions on medical imaging Mar, 2011 | Pubmed ID: 21047709
MicroRNA-integrated and network-embedded gene selection with diffusion distance.
PloS one , 2010 | Pubmed ID: 21060785
Multi scale and slice-based approach for automatic spine detection.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference , 2010 | Pubmed ID: 21096249
Coronary artery segmentation using geometric moments based tracking and snake-driven refinement.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference , 2010 | Pubmed ID: 21096589
Characterization of a human tumorsphere glioma orthotopic model using magnetic resonance imaging.
Journal of neuro-oncology Sep, 2011 | Pubmed ID: 21240539
The effect of mTOR inhibition alone or combined with MEK inhibitors on brain metastasis: an in vivo analysis in triple-negative breast cancer models.
Breast cancer research and treatment Jan, 2012 | Pubmed ID: 21394501
Progress of engineered antibody-targeted molecular imaging for solid tumors (Review).
Molecular medicine reports Jan-Feb, 2008 | Pubmed ID: 21479389
Label-free high-resolution imaging of prostate glands and cavernous nerves using coherent anti-Stokes Raman scattering microscopy.
Biomedical optics express , 2011 | Pubmed ID: 21483613
Peak tree: a new tool for multiscale hierarchical representation and peak detection of mass spectrometry data.
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM Jul-Aug, 2011 | Pubmed ID: 21566254
Coherent anti-Stokes Raman scattering microscopy imaging with suppression of four-wave mixing in optical fibers.
Optics express Apr, 2011 | Pubmed ID: 21643045
An enhanced Petri-net model to predict synergistic effects of pairwise drug combinations from gene microarray data.
Bioinformatics (Oxford, England) Jul, 2011 | Pubmed ID: 21685086
Real-time monitoring of cell viability using direct electrical measurement with a patch-clamp microchip.
Biomedical microdevices Oct, 2011 | Pubmed ID: 21698381
Use of multimode optical fibers for fiber-based coherent anti-Stokes Raman scattering microendoscopy imaging.
Optics letters Aug, 2011 | Pubmed ID: 21808374
Differential diagnosis of breast cancer using quantitative, label-free and molecular vibrational imaging.
Biomedical optics express Aug, 2011 | Pubmed ID: 21833355
Motion correction for cellular-resolution multi-photon fluorescence microscopy imaging of awake head-restrained mice using speed embedded HMM.
Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society Sep, 2011 | Pubmed ID: 21890321
ONLINE THREE-DIMENSIONAL DENDRITIC SPINES MOPHOLOGICAL CLASSIFICATION BASED ON SEMI-SUPERVISED LEARNING.
Proceedings / IEEE International Symposium on Biomedical Imaging: from nano to macro. IEEE International Symposium on Biomedical Imaging Jun, 2009 | Pubmed ID: 21922077
An Image Driven Systems Biology Approach for Neurodegenerative Disease Studies in the TSC-mTOR Pathway.
IEEE/NIH Life Science Systems and Applications Workshop. IEEE/NIH Life Science Systems and Applications Workshop May, 2009 | Pubmed ID: 21922078
On-the-spot lung cancer differential diagnosis by label-free, molecular vibrational imaging and knowledge-based classification.
Journal of biomedical optics Sep, 2011 | Pubmed ID: 21950918
A time-series method for automated measurement of changes in mitotic and interphase duration from time-lapse movies.
PloS one , 2011 | Pubmed ID: 21966537
The kinetochore protein Bub1 participates in the DNA damage response.
DNA repair Feb, 2012 | Pubmed ID: 22071147
Aurora-B mediated ATM serine 1403 phosphorylation is required for mitotic ATM activation and the spindle checkpoint.
Molecular cell Nov, 2011 | Pubmed ID: 22099307
A novel method of transcriptional response analysis to facilitate drug repositioning for cancer therapy.
Cancer research Jan, 2012 | Pubmed ID: 22108825
Fabrication of localized surface plasmon resonance fiber probes using ionic self-assembled gold nanoparticles.
Sensors (Basel, Switzerland) , 2010 | Pubmed ID: 22163561
Identification of small molecule inhibitors of neurite loss induced by Aβ peptide using high-content screening.
The Journal of biological chemistry Jan, 2012 | Pubmed ID: 22277654
Kenneth K. Kwong1,2,
Lenuta Kloetzer1,2,3,4,
Kelvin K. Wong5,6,
Jia-Qian Ren1,2,
Braden Kuo1,2,3,4,
Yan Jiang7,
Y. Iris Chen1,2,
Suk-Tak Chan1,2,8,
Geoffrey S. Young9,
Stephen T.C. Wong5,6
1Department of Radiology, Massachusetts General Hospital, Harvard Medical School,
2Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Harvard Medical School,
3Gastrointestinal Unit, Massachusetts General Hospital, Harvard Medical School,
4Department of Medicine, Massachusetts General Hospital, Harvard Medical School,
5Center for biotechnology and Informatics, The Methodist Hospital Research Institute,
6Department of Radiology, The Methodist Hospital, Weill Cornell Medical College,
7, Bejing University of Chinese Medicine,
8Department of Health Technology and Informatics, The Hong Kong Polytechnic University,
9Department of Radiology, Brigham and Women's Hospital, Harvard Medical School