We thank the greenhouse team at the MPI-CE at the Botanical Garden of the Friedrich Schiller University, Jena, for cultivating plants and Wilhelm Boland and the Max Planck Society for support.

1. Plant Material Preparation
<ol>
	<li>All Nepenthes species were grown either in the greenhouses of the MPI for Chemical Ecology or the Botanical Garden in Jena, Germany.</li>
	<li>For the preparation of secreting tissue harvest a pitcher and remove the upper one third including lid, peristome, and slippery zone. The pitcher can be used either freshly or frozen in liquid nitrogen and stored at -80 &#176;C.</li>
</ol>
2. Microdissection of Pitcher Tissue
<ol>
	<li>The microsampling platform consists of a stereomicroscope and a micromanipulator, which is directly attached to the microscope body and is operated by a 3D joystick. Here, an early prototype of aureka was used as documented (Figure 2A).</li>
	<li>For the dissection of secretory glands from Nepenthes pitchers use a microforceps and attach it to the manipulator (Figures 2A and 2B).</li>
	<li>For RNA extraction, treat all instruments (razor blades, tweezers, micromanipulator, microforceps, object slide) with RNaseZAP.</li>
	<li>Prepare the collection tubes by adding 9 &#956;l nuclease-free water and 1 &#956;l RNase inhibitor in a PCR tube for RNA extraction. For direct PCR from tissue samples use only nuclease-free water (10 &#956;l).
	<ol>
		<li>Take the fresh or frozen pitcher and remove a 1-2 cm2 piece of tissue containing the secretory glands by using a razor blade and tweezers. Wash the tissue with water; add 0.1% diethylpyrocarbonate (DEPC) if RNA will be extracted.</li>
		<li>Fix the plant material with double-faced adhesive tape on an object slide (the gland covered surface should face upwards, Figures 2C and&#160;2D) and secure the slide with adhesive tape on a universal stage, which should be applied with a moveable table.</li>
		<li>For extracting nucleic acids the preparation should be done on ice. Therefore take a flat Styrofoam box, place the universal stage containing the sample inside and fill the box with ice. Afterwards place the box under the microscope.</li>
		<li>For preparation the positioning of the glands is very important. The secretory glands are partial covered by a protective hood (Figure 3) and only accessible by the forceps from one side. Furthermore the angle of the sample to the forceps has to be adjusted by tilting the table of the universal stage approximately 135&#176;, depending on the Nepenthes species.</li>
		<li>The microdissection is done under visual control. For gland isolation, use a non-UV filter, to limit the degradation of DNA and RNA.</li>
		<li>Move micromanipulator and forceps via the control panel to the selected gland. When reached the gland, place each arm of the forceps on either side of the gland. Remove the gland from the remaining tissue by closing the forceps (Figure 4A).</li>
		<li>Direct the gland attached to the forceps away from the object and to the collection tube. Bring the very tips of forceps in contact with the solution in the tube (Figure 4B). The release of the gland by opening the forceps has to be well observed, because the glands tend to stick on the tool tip. The tissue can be stored at -80 &#176;C until PCR or RNA extraction.</li>
	</ol>
	</li>
</ol>
3. Direct PCR Amplification from Nepenthes Tissue
<ol>
	<li>To prove the efficiency of the preparation method, a PCR approach directly from the gland tissue without a DNA extraction step can be performed.</li>
	<li>For the PCR amplification use gene specific primers; here encoding for the sequence of a thaumatin-like protein (TLP) (forward: 5&#39;-CAATGAGCCAATTCATAAAATTCATTG-3&#39;, reverse: 5&#39;-CAGTTATACTTTAAGGGCAAAACACAAC-3&#39;).
	<ol>
		<li>Collect 1-5 glands in a PCR tube containing 10 &#956;l of nuclease-free water. For a 50 &#956;l reaction add 5 &#956;l of 10x Taq buffer, 1 &#956;l 10 mM deoxynucleoside triphosphates (dNTPs), 3 &#956;l 25 mM MgCl2, 0.4 &#956;l (1.25 U) Taq DNA polymerase, 1 &#956;l (100 pmol) of each primer, and 28.6 &#956;l of nuclease-free water.</li>
		<li>Carry out PCR reactions in a thermocycler with the following program: initial denaturation 94 &#176;C for 3 min; 35 cycles of denaturation (94 &#176;C for 30 sec), annealing (59 &#176;C for 30 sec), and extension (72 &#176;C for 1 min); and a final extension step of 10 min at 72 &#176;C.</li>
		<li>Prove the amplification of the PCR product by using agarose gel electrophoresis. Therefore&#160;use 1.5% (w/v) agarose and dissolve it in 1x TAE (40 mM Tris base, 20 mM glacial acetic acid, 1 mM EDTA, pH 8) buffer. Heat the solution in a microwave until the agarose is dissolved. To 100 ml agarose solution, add 1 &#956;l ethidium bromide (10 &#956;g/&#956;l) for downstream visualization. Run the gel in 1x TAE buffer at 300 V, 115 mA for approximately 20 min in an electrophoresis chamber. The correct size of the TLP amplicon must be at 690 bp.</li>
	</ol>
	</li>
</ol>
4. RNA Extraction from Small Tissue Samples and Reverse Transcription
<ol>
	<li>Perform the following steps on ice. For the extraction of RNA two extraction methods were used, a Micro Kit for the extraction of total RNA and a mRNA isolation kit applied with magnetic beads.</li>
	<li>Collect at least 30 secretory glands by micropreparation in a PCR tube containing 1 &#956;l RNase inhibitor and 9 &#956;l of nuclease-free water. Afterwards lyse the tissue in a thermocycler for 10 min at 75 &#176;C.</li>
	<li>Extraction of total RNA.
	<ol>
		<li>After preparation add 90 &#956;l of lysis solution to the sample and incubate for 10 min at 75 &#176;C. Afterwards load the reaction mix on the column (provided with the kit) and proceed with the washing steps as described in the manual of the manufacturer.</li>
		<li>Elute the RNA two times with 10 &#956;l Elution Solution respectively and continue with the DNase I treatment.</li>
		<li>To 20 &#956;l extracted RNA add 2 &#956;l of 10x DNase I buffer and 1 &#956;l DNase I (provided with RNA extraction kit) and incubate 1 hr at 37 &#176;C. Stop the reaction by adding 2 &#956;l of DNase Inactivation Reagent and incubate for 2 min at room temperature. After a centrifugation step for 1.5 min at maximum speed, the RNA can be transferred to a fresh RNase-free tube. Determine the RNA concentration of each sample using a spectrophotometer. The samples should be stored at -80 &#176;C.</li>
	</ol>
	</li>
	<li>Extraction of mRNA using magnetic beads.
	<ol>
		<li>Adjust the sample volume to 100 &#956;l with lysis/binding buffer (supplied in the kit) and incubate for 10 min at 75 &#176;C. Add 20 &#956;l of magnetic beads supplied with an Oligo (dT)25 overhang and mix the reaction for 5 min at room temperature. The mRNA binds by the poly(A) tail to the Oligo (dT)25 overhang of the beads.</li>
		<li>Perform the washing steps of the mRNA bound to the magnetic beads by following the manufacturer&#39;s protocol. Solutions can be removed by using a magnet. Resuspend the beads in 20 &#956;l 10 mM Tris-HCl buffer (pH 7.5).</li>
		<li>Remove contaminations of genomic DNA by treating the sample with 2U (1 &#956;l) of DNase (2 &#956;l 10x DNase buffer and 17 &#956;l nuclease-free water) for 1 hr at 37 &#176;C. Afterwards the enzyme solution is removed by the magnet and the beads are resuspended in 20 &#956;l of 10 mM Tris-HCl buffer. It is not possible to measure the RNA concentration since it is attached to the beads. The samples should be stored at -80 &#176;C.</li>
	</ol>
	</li>
	<li>For the reverse transcription use a cDNA Synthesis kit. Reactions were performed by following the manufacturer&#39;s protocol.
	<ol>
		<li>For the reverse transcription of total RNA add 1 &#956;l (100 pmol) Oligo (dT)20 primer or 1 &#956;l (0.4 &#956;g) Random Hexamers, 1 &#956;l RNase inhibitor, and 1 &#956;l 10 mM dNTP Mix to 1 &#956;g of RNA and adjust the volume to 14 &#956;l with nuclease-free water. Incubate at 65 &#176;C for 5 min and afterwards place the samples on ice. Add 1 &#956;l 0.1M DTT, 1 &#956;l reverse transcriptase, and 4 &#956;l of 5x RT buffer. The reactions are incubated for 55 min at 50 &#176;C, followed by an inactivation step at 70 &#176;C for 10 min. After reverse transcription samples can be stored at -20 &#176;C.</li>
		<li>For mRNA bound to magnetic beads, replace the Tris-HCl buffer with the first reaction mix (1 &#956;l RNase inhibitor, 1 &#956;l 10 mM dNTP Mix, and 12 &#956;l nuclease-free water) and incubate for 5 min at 65 &#176;C. Because of the Oligo (dT)25 overhang of the beads it is not necessary to add an Oligo (dT)20 primer or Random Hexamers to the samples. Afterwards follow the protocol above (step 4.5.1).</li>
		<li>Measure the cDNA concentration with a spectrophotometer. Store the samples at -20 &#176;C.</li>
	</ol>
	</li>
</ol>
5. Real-time PCR
<ol>
	<li>For the analyses with Real-time PCR use total RNA extracted with the Micro Kit and a SYBR Green QPCR Master Mix. To ensure an equal amount of transcripts, adjust the cDNA concentration of each sample to the same value after the reverse transcription.</li>
	<li>In addition to the samples insert control reactions. Use a nontemplate control to screen for contamination in the reagents and to check the quality of your primers. To verify the absence of genomic DNA run a non-RT control. Both reactions should be negative (no fluorescence signal) in the Real-time PCR.</li>
	<li>To guaranty an equal transcript level between the different samples use at least one reference gene. Here, designed primer pairs encoding for an actin (forward: 5&#39;-CTCTTAACCCCAAAGCAAACAGG-3&#39;, reverse: 5&#39;-GTGAGAGAACAGCCTGGATG-3&#39;) and an 18SrRNA (forward: 5&#39;-CTTGATTCTATGGGTGGTGGTG-3&#39;, reverse: GTTAGCAGGCTGAGGTCTC-3&#39;) were used. As a target gene the TLP (forward: 5&#39;- GTGGGCAACAATTGGACCCAG-3&#39;, reverse: 5&#39;-CATTCGATCCGGAAAGGCTAC-3&#39;) was chosen. The size of each amplified fragment was about 100bp.</li>
	<li>For a 25 &#956;l reaction add 12.5 &#956;l 2x SYBR Green QPCR Master Mix, cDNA (&#8805;20 ng), 400 nM of each primer, and 30 nM of the passive reference dye ROX (provided with kit). Adjust the sample volume to 25 &#956;l with nuclease-free water.</li>
	<li>Reactions were performed in a QPCR thermocycler with the following program: initial denaturation at 95 &#176;C for 10 min to active the polymerase; 40 cycles of denaturation (95 &#176;C for 30 sec), annealing (61 &#176;C for 60 sec), and extension (72 &#176;C for 1 min); followed by the dissociation curve (95 &#176;C for 60 sec, 55 &#176;C for 30 sec, 95 &#176;C for 30 sec). The dissociation curve is necessary to determine the absence of primer dimers, which can be detected by an additional peak.</li>
	<li>Determine the efficiency (E) of each PCR reaction by using the method of Liu and Saint8. The efficiency can be deflected from the linear part of the amplification curve. Here the relative amplicon number (Rn, A) of one cycle point (CPA) is linked to the amount of amplicons (Rn, B) of another cycle (CPB).</li>
	<li>Analyze the Real-time PCR results with the Relative Expression Software Tool (REST 2009, <a href="http://www.gene-quantification.de/rest-2009.html" target="_blank">http://www.gene-quantification.de/rest-2009.html</a>) or a similar software. Use the program to calculate the expression ratio of a gene in a treated sample compared to a control.</li>
</ol>

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We have nothing to disclose.

For a long time, studies of plant secretory structures, in particular trichomes have been performed essentially on anatomy and were purely descriptive. There is a large body of publications of this type as summarized in reviews by9-11. Our biochemical and molecular knowledge of plant secretory structures is still limited in spite of some early remarkable work e.g. on mint glandular trichomes showing that glandular trichomes are the site of biosynthesis of monoterpenoids which are secreted into the sub...

Plants produce a wide huge variety of compounds with different industrial and pharmaceutical applications, ranging from small molecular weight molecules to polymers. Such compounds are frequently produced and secreted by highly specialized structures, many of which are localized at the surface of the plants such as glandular trichomes or nectaries, or internally such as idioblasts or latex and resin ducts, respectively. However, relatively little is known about the biology of these specialized secretory structures, although all types of those glands display many features that are indicative of active metabolism. In particular, glands of carnivorous plants such as Nepenthes can be seen as model systems in plant cell biology1.
Carnivorous plants are the object of several studies since 1875 when Charles Darwin&#39;s &#39;Insectivorous Plants&#39; was published2. However, only in the last few years research on the molecular level has been done and still our knowledge is limited. For example, the protein composition of the digestion fluid in the pitcher plants of the genus Nepenthes is still not completely known. Only recently several hydrolytic proteins have been identified and a few of the corresponding genes as well3. In the pitfall-traps of Nepenthes (Figure 1), multicellular glands are localized at the inner bottom of the pitchers. These glands do both production and secretion of the digestive enzymes into the pitcher fluid and absorption of dissolved nutrients from the pitcher fluid4. Hence, these bifunctional glands represent a unique microtissue with a central position and function in the carnivory of Nepenthes that is worth to be studied in detail.
<img alt="Figure 1" src="/files/ftp_upload/50993/50993fig1.jpg" /> 
Figure 1. Nepenthes alata pitcher. The lower part of the pitcher contains the digestive fluid and glands on the inside.
<a href="http://www.jove.com/files/ftp_upload/50993/50993fig1highres.jpg" target="_blank">Click here to view larger image</a>.
In plant sciences, many experimental approaches rely on &#39;bulk material&#39; because no defined tissue is investigated but entire organs. As a consequence, their homogenization and analysis can only provide results that are diluted and proportionately with respect to individual tissues and cells5. To solve this problem, micropreparation techniques, for example the so-called laser capture microdissection (LCM), were developed and successfully used to harvest specific plant tissues and analyze their individual contents6. However, LCM is often limited if unstable and/or fast degrading cell components are targeted such as RNA. In such a case, the need of previous tissue fixation that is time consuming and often accompanied by degradation of the biomolecules, is of disadvantage. Moreover, due to the high water content of many plant tissues and the strength of cell walls, LCM often failed to prepare straight from fresh tissue7. Any approach to investigate cellular components that are present in secretory glands from genes, mRNA, and proteins to secondary compounds and their biosynthesis needs alternative techniques for the particular preparation. Thus, specific techniques to isolate single cells or even multicellular glands that remain intact after preparation are necessary.
Here a method is presented, employing a mechanized microsampling platform that features a direct microscopic visualization. This technique is both rapid and efficient in the preparation of individual glands from the pitchers of Nepenthes species. These multicellular glands are bifunctional, i.e. they are involved in secretion as well as in uptake processes, they are sessile, and not exposed cell layers are impregnated to form an endodermis. Entire glands can be isolated without neighboring tissue and deposited in a well-defined manner into a PCR tube. This technique is applied to study specific genes as well as gene expression in the glands&#39; tissues.

<table><tbody><tr><td>RNAqueous-Micro Kit</td><td>Life Technologies GmbH, Germany</td><td>AM1931</td><td>Isolation of total RNA, 50 samples</td></tr><tr><td>Dynabeads mRNA DIRECT Micro Kit</td><td>Life Technologies GmbH, Germany</td><td>61011</td><td>5 ml Dynabeads Oligo (dT)&lt;sub&gt;25&lt;/sub&gt;</td></tr><tr><td>DynaMag-2 magnet</td><td>Life Technologies GmbH, Germany</td><td>12321D</td><td></td></tr><tr><td>SuperScript CellsDirect cDNA Synthesis System</td><td>Life Technologies GmbH, Germany</td><td>18080-200</td><td>25 reactions</td></tr><tr><td>RNaseOUT</td><td>Life Technologies GmbH, Germany</td><td>10777-019</td><td>Rnase inhibitor, 5,000 units</td></tr><tr><td>Random Hexamers (0.4 &amp;mu;g/&amp;mu;l)</td><td>QIAGEN GmbH, Germany</td><td>79236</td><td>100 &amp;mu;l</td></tr><tr><td>10 mM dNTP Mix, molecular biology grade</td><td>Fermentas GmbH, Germany</td><td>R0192</td><td>1 ml</td></tr><tr><td>&lt;em&gt;Taq&lt;/em&gt; DNA polymerase, (recombinant)</td><td>Fermentas GmbH, Germany</td><td>EP0402</td><td>Supplied with 10x &lt;em&gt;Taq&lt;/em&gt; buffer (with KCl or (NH&lt;sub&gt;4&lt;/sub&gt;)&lt;sub&gt;2&lt;/sub&gt;SO&lt;sub&gt;4&lt;/sub&gt;) and 25 mM MgCl&lt;sub&gt;2&lt;/sub&gt;</td></tr><tr><td>TURBO DNase</td><td>Life Technologies GmbH, Germany</td><td>AM2238</td><td>1,000 units</td></tr><tr><td>Agarose</td><td>Carl Roth GmbH Co. Germany</td><td>T846.3</td><td></td></tr><tr><td>GeneRuler Low Range DNA ladder, ready-to-use</td><td>Fermentas GmbH, Germany</td><td>SM1193</td><td>50 &amp;mu;g</td></tr><tr><td>Brilliant II SYBR Green QPCR Master Mix</td><td>Agilent Technologies, Inc., USA</td><td>600828</td><td>Single kit</td></tr><tr><td>RNaseZAP</td><td>Sigma-Aldrich, Taufkirchen, Germany</td><td>R2020</td><td></td></tr><tr><td>Razor blade</td><td>Carl Roth GmbH Co., Germany</td><td>CK08.1</td><td></td></tr><tr><td>Tweezers</td><td>Carl Roth GmbH Co., Germany</td><td>2801.1 / 2855.1</td><td></td></tr><tr><td>GE NanoVue spectrophotometer</td><td>GE Healthcare Europe GmbH, Germany</td><td>28-9569-62</td><td></td></tr><tr><td>Mastercycler gradient</td><td>Eppendorf AG, Hamburg, Germany</td><td>5331 000.010</td><td></td></tr><tr><td>Mx3000P Real-Time PCR System</td><td>Stratagene, USA</td><td>401403</td><td></td></tr><tr><td>Agagel Standard Horizontal Gel Electrophoresis Chamber</td><td>Biometra</td><td>Discontinued</td><td></td></tr><tr><td>Micromanipulator</td><td>aura optik gmbh</td><td>aureka</td><td>Equipped with a microforceps</td></tr><tr><td>Stereomicroscope</td><td>Carl Zeiss Microscopy, Jena, Germany</td><td>SteREO Lumar.V12</td><td>Equipped with an AxioCam</td></tr><tr><td>Lumar Filter set 01</td><td>Carl Zeiss, Microscopy, Jena, Germany</td><td>485001-0000-000</td><td>UV filter</td></tr><tr><td>Lumar Filter set 09</td><td>Carl Zeiss, Microscopy, Jena, Germany</td><td>485009-0000-000</td><td>non-UV filter</td></tr></tbody></table>

isolation of viable multicellular glands from tissue of the carnivorous plant, nepenthes

Many plants possess specialized structures that are involved in the production and secretion of specific low molecular weight compounds and proteins. These structures are almost always localized on plant surfaces. Among them are nectaries or glandular trichomes. The secreted compounds are often employed in interactions with the biotic environment, for example as attractants for pollinators or deterrents against herbivores.
Glands that are unique in several aspects can be found in carnivorous plants. In so-called pitcher plants of the genus Nepenthes, bifunctional glands inside the pitfall-trap on the one hand secrete the digestive fluid, including all enzymes necessary for prey digestion, and on the other hand take-up the released nutrients. Thus, these glands represent an ideal, specialized tissue predestinated to study the underlying molecular, biochemical, and physiological mechanisms of protein secretion and nutrient uptake in plants. Moreover, generally the biosynthesis of secondary compounds produced by many plants equipped with glandular structures could be investigated directly in glands.
In order to work on such specialized structures, they need to be isolated efficiently, fast, metabolically active, and without contamination with other tissues. Therefore, a mechanical micropreparation technique was developed and applied for studies on Nepenthes digestion fluid. Here, a protocol is presented that was used to successfully prepare single bifunctional glands from Nepenthes traps, based on a mechanized microsampling platform. The glands could be isolated and directly used further for gene expression analysis by PCR techniques after preparation of RNA.

For the preparation of single glands from Nepenthes pitcher tissue, a mechanized microdissection technique was developed and applied. The micropreparation platform needs to be equipped with microforceps, attached to the micromanipulator, which in turn are operated by a control panel. Individual glands, visible under the microscope, could be targeted with the forceps that grasped the gland tissue and removed it mechanically (Figure 4A).
The glandular tissue was transfe...

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Isolation of Viable Multicellular Glands from Tissue of the Carnivorous Plant, Nepenthes

Plants glands are specialized structures responsible for the biosynthesis and secretion of many compounds involved in interactions with the biotic environment. To enable studies on their molecular and biochemical features, a mechanical micropreparation technique was established in order to isolate single metabolically active glands, here from the carnivorous plant Nepenthes.

Isolation of Viable Multicellular Glands from Tissue of the Carnivorous Plant, Nepenthes

Many plants possess specialized structures that are involved in the production and secretion of specific low molecular weight compounds and proteins. ...

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Research

JoVE Journal

Biology

4.7K Views.  Université de Lorraine. Plants glands are specialized structures responsible for the biosynthesis and secretion of many compounds involved in interactions with the biotic environment. To enable studies on their molecular and biochemical features, a mechanical micropreparation technique was established in order to isolate single metabolically active glands, here from the carnivorous plant Nepenthes.

Video: Isolation of Viable Multicellular Glands from Tissue of the Carnivorous Plant, Nepenthes

Non-Aqueous Isolation and Enrichment of Glandular Capitate Stalked and Sessile Trichomes from Cannabis sativa

This paper presents a protocol for the convenient and high-throughput isolation and enrichment of glandular capitate stalked and sessile trichomes from Cannabis sativa. The biosynthetic pathways for cannabinoid and volatile terpene metabolism are localized primarily in the Cannabis trichomes, and isolated trichomes are beneficial for transcriptome analysis. The existing protocols for isolating glandular trichomes for transcriptomic characterization are inconvenient and deliver compromised trichome heads and a relatively low amount of isolated trichomes. Furthermore, they rely on expensive apparatus and isolation media containing protein inhibitors to avoid RNA degradation. The present protocol suggests combining three individual modifications to obtain a large amount of isolated glandular capitate stalked and sessile trichomes from C. sativa mature female inflorescences and fan leaves, respectively. The first modification involves substituting liquid nitrogen for the conventional isolation medium to facilitate the passage of trichomes through the micro-sieves. The second modification involves using dry ice to detach the trichomes from the plant source. The third modification involves passing the plant material consecutively through five micro-sieves of diminishing pore sizes. Microscopic imaging demonstrated the effectiveness of the isolation technique for both trichome types. In addition, the quality of RNA extracted from the isolated trichomes was appropriate for downstream transcriptomic analysis.

Non-Aqueous Isolation and Enrichment of Glandular Capitate Stalked and Sessile Trichomes from Cannabis sativa

A protocol is presented for the convenient and high-throughput isolation and enrichment of glandular capitate stalked and sessile trichomes from Cannabis sativa. The protocol is based on a dry, non-buffer extraction of trichomes using only liquid nitrogen,&#160;dry ice, and nylon sieves and is suitable for RNA extraction and transcriptomic analysis.

בידוד לא מימי והעשרה של גבעול קפיטט בלוטי וטריכומות ססילה מקנאביס סאטיבה

This paper presents a protocol for the convenient and high-throughput isolation and enrichment of glandular capitate stalked and sessile trichomes from ...

Genetics

Organoids as Model for Infectious Diseases: Culture of Human and Murine Stomach Organoids and Microinjection of Helicobacter Pylori

Recently infection biologists have employed stem cell derived cultures to answer the need for new and better models to study host-pathogen interactions. Three cellular sources have been used: Embryonic stem cells (ESC), induced pluripotent stem cells (iPSC) or adult stem cells. Here, culture of mouse and human gastric organoids derived from adult stem cells is described and used for infection with the gastric pathogen Helicobacter pylori. Human gastric glands are isolated from resection material, seeded in a basement matrix and embedded in medium containing growth factors epidermal growth factor (EGF), R-spondin, Noggin, Wnt, fibroblast growth factor (FGF) 10, gastrin and transforming growth factor (TGF) beta inhibitor. In these conditions, gastric glands grow into 3-dimensional organoids containing 4 lineages of the stomach. The organoids expand indefinitely and can be frozen and thawed similarly as cell lines. For infection studies, bacteria are microinjected into the lumen of the organoids. Infected organoids are processed for imaging. The described methods can be adapted to other organoids and infections with other bacteria, viruses or parasites. This allows the study of infection-induced changes in primary cells.

Stem cell derived cultures harbor tremendous potential to model infectious diseases. Here, the culture of mouse and human gastric organoids derived from adult stem cells is described. The organoids are microinjected with the gastric pathogen Helicobacter pylori.

Organoids כמודל למחלות זיהומיות: התרבות של האדם וOrganoids הקיבה Murine וMicroinjection של הליקובקטר פילורי

Recently infection biologists have employed stem cell derived cultures to answer the need for new and better models to study host-pathogen interactions. ...

Immunology and Infection

Microdissection of Black Widow Spider Silk-producing Glands

Modern spiders spin high-performance silk fibers with a broad range of biological functions, including locomotion, prey capture and protection of developing offspring 1,2. Spiders accomplish these tasks by spinning several distinct fiber types that have diverse mechanical properties. Such specialization of fiber types has occurred through the evolution of different silk-producing glands, which function as small biofactories. These biofactories manufacture and store large quantities of silk proteins for fiber production. Through a complex series of biochemical events, these silk proteins are converted from a liquid into a solid material upon extrusion.
Mechanical studies have demonstrated that spider silks are stronger than high-tensile steel 3. Analyses to understand the relationship between the structure and function of spider silk threads have revealed that spider silk consists largely of proteins, or fibroins, that have block repeats within their protein sequences 4. Common molecular signatures that contribute to the incredible tensile strength and extensibility of spider silks are being unraveled through the analyses of translated silk cDNAs. Given the extraordinary material properties of spider silks, research labs across the globe are racing to understand and mimic the spinning process to produce synthetic silk fibers for commercial, military and industrial applications. One of the main challenges to spinning artificial spider silk in the research lab involves a complete understanding of the biochemical processes that occur during extrusion of the fibers from the silk-producing glands.
Here we present a method for the isolation of the seven different silk-producing glands from the cobweaving black widow spider, which includes the major and minor ampullate glands [manufactures dragline and scaffolding silk] 5,6, tubuliform [synthesizes egg case silk] 7,8, flagelliform [unknown function in cob-weavers], aggregate [makes glue silk], aciniform [synthesizes prey wrapping and egg case threads] 9 and pyriform [produces attachment disc silk] 10. This approach is based upon anesthetizing the spider with carbon dioxide gas, subsequent separation of the cephalothorax from the abdomen, and microdissection of the abdomen to obtain the silk-producing glands. Following the separation of the different silk-producing glands, these tissues can be used to retrieve different macromolecules for distinct biochemical analyses, including quantitative real-time PCR, northern- and western blotting, mass spectrometry (MS or MS/MS) analyses to identify new silk protein sequences, search for proteins that participate in the silk assembly pathway, or use the intact tissue for cell culture or histological experiments.

Here we describe an efficient strategy to remove the silk-producing glands from the abdomen of female black widow spiders. This procedure allows the rapid isolation of the seven distinct silk-producing glands in a highly purified fashion, an important process for investigators studying spider silk production and fiber assembly.

Microdissection של האלמנה השחורה עכביש המשי לייצור בלוטות

Modern spiders spin high-performance silk fibers with a broad range of biological functions, including locomotion, prey capture and protection of ...

Mouse- and Human-derived Primary Gastric Epithelial Monolayer Culture for the Study of Regeneration

In vitro studies of gastric wound repair typically involves the use of gastric cancer cell lines in a scratch-wound assay of cellular proliferation and migration. One critical limitation of such assays, however, is their homogenous assortment of cellular types. Repair is a complex process which demands the interaction of several cell types. Therefore, to study a culture devoid of cellular subtypes, is a concern that must be overcome if we are to understand the repair process. The gastric organoid model may alleviate this issue whereby the heterogeneous collection of cell types closely reflects that of the gastric epithelium or other native tissues in vivo. Demonstrated here is a novel, in vitro scratch-wound assay derived from human or mouse 3-dimensional organoids which can then be transferred to a gastric epithelial monolayer as either intact organoids or as a single cell suspension of dissociated organoids. The goal of the protocol is to establish organoid-derived gastric epithelial monolayers that can be used in a novel scratch-wound assay system to study gastric regeneration.

Here we describe a protocol for establishing and culturing human- and mouse-derived 3-dimensional (3D) gastric organoids, and the method for the transfer of 3D organoids to a 2-dimensional monolayer. The use of the gastric epithelial monolayer as a novel scratch-wound assay for regeneration studies is also described.

העכבר ואת האדם-נגזר תרבות ראשי קיבה אפיתל חד שכבתי לצורך המחקר של התחדשות

In vitro studies of gastric wound repair typically involves the use of gastric cancer cell lines in a scratch-wound assay of cellular proliferation and ...

Isolation of Basal Cells and Submucosal Gland Duct Cells from Mouse Trachea

The large airways are directly in contact with the environment and therefore susceptible to injury from toxins and infectious agents that we breath in 1. The large airways therefore require an efficient repair mechanism to protect our bodies. This repair process occurs from stem cells in the airways and isolating these stem cells from the airways is important for understanding the mechanisms of repair and regeneration. It is also important for understanding abnormal repair that can lead to airway diseases 2. The goal of this method is to isolate a novel stem cell population from the mouse tracheal submucosal gland ducts and to place these cells in in vitro and in vivo model systems to identify the mechanisms of repair and regeneration of the submucosal glands 3. This production shows methods that can be used to isolate and assay the duct and basal stem cells from the large airways 3.This will allow us to study diseases of the airway, such as cystic fibrosis, asthma and chronic obstructive pulmonary disease. Currently, there are no methods for isolation of submucosal gland duct cells and there are no in vivo models to study the regeneration of submucosal glands.

Here we demonstrate our protocol for isolation of basal and submucosal gland duct cells from mouse tracheas. We also demonstrate the method of injecting stem cells into the dorsal mouse fat pad to create an in vivo model of submucosal gland regeneration.

בידוד של תאי בסיס ותאי בלוטת Duct Submucosal מעכבר קנה נשימה

The large airways are directly in contact with the environment and therefore susceptible to injury from toxins and infectious agents that we breath in 1. ...

Isolation of Salivary Epithelial Cells from Human Salivary Glands for In Vitro Growth as Salispheres or Monolayers

The salivary glands are a site of significant interest for researchers interested in multiple aspects of human disease. One goal of researchers is to restore function of glands damaged by radiation therapies or due to pathologies associated with Sj&#246;gren's syndrome. A second goal of researchers is to define the mechanisms by which viruses replicate within glandular tissue where they can then gain access to salivary fluids important for horizontal transmission. These goals highlight the need for a robust and accessible in vitro salivary gland model that can be utilized by researchers interested in the above mentioned as well as related research areas. Here we discuss a simple protocol to isolate epithelial cells from human salivary glands and propagate them in vitro. Our protocol can be further optimized to meet the needs of individual studies. Briefly, salivary tissue is mechanically and enzymatically separated to isolate single cells or small clusters of cells. Selection for epithelial cells occurs by plating onto a basement membrane matrix in the presence of media optimized to promote epithelial cell growth. These resulting cultures can be maintained as three-dimensional clusters, termed "salispheres", or grown as a monolayer on treated plastic tissue culture dishes. This protocol results in the outgrowth of a heterogenous population of mainly epithelial cells that can be propagated for 5-8 passages (15-20 population doublings) before undergoing cellular senescence.

We present a method for isolating and cultivating primary human salivary gland-derived epithelial cells. These cells exhibit gene expression patterns consistent with them being of salivary epithelial origin and can be grown as salispheres on basement membrane matrices derived from Engelbreth-Holm-Swarm tumor cells or as monolayers on treated culture dishes.

בידוד של תאים אפיתל הרוק מן הרוק בלוטות האדם עבור צמיחה מחוץ לתחום כמו סאליספירות או Monolayers

The salivary glands are a site of significant interest for researchers interested in multiple aspects of human disease. One goal of researchers is to ...

Isolation of Neonatal Extrahepatic Cholangiocytes

The intra and extrahepatic bile ducts of the liver are developmentally distinct, and may be differentially affected by certain diseases. However, differences between intra and extrahepatic cholangiocytes, and between neonatal and adult cells, are not well understood.
Methods for the isolation of cholangiocytes from intrahepatic bile ducts are well established1-4. Isolation of extrahepatic ductal cells, especially from the neonate, has not yet been described, although this would be of great benefit in understanding the differences between distinct cholangiocyte populations and in studying diseases such as biliary atresia that appear to target the extrahepatic ducts. Described here is an optimized technique to isolate both neonatal and adult mouse extrahepatic bile duct cells. This technique yields a pure cell population with minimal contamination from mesenchymal cells like fibroblasts.
This method is based on the removal of the extrahepatic ducts and gallbladder, followed by meticulous dissection and scraping to remove fat and fibroblast layers. Structures are embedded in thick layers of collagen and cultured for approximately 3 weeks to allow outgrowth of cholangiocytes in monolayers, which can then be trypsinized and re plated for experimental use.

A technique to isolate cholangiocytes from the extrahepatic bile ducts of neonatal mice is described. The ducts are meticulously dissected, and then cells are isolated by outgrowth in thick collagen gels. This method provides a useful tool for studying extrahepatic bile duct development and pathology.

בידוד של ילודים extrahepatic Cholangiocytes

The intra and extrahepatic bile ducts of the liver are developmentally distinct, and may be differentially affected by certain diseases. However, ...

הדמיה חיה בזמן אמת של התחדשות בלוטה תת-לסתית של עכבר

Interrogating Cell-Cell Interactions in the Salivary Gland via Ex Vivo Live Cell Imaging

Salivary gland regeneration is a complex process involving intricate interactions among various cell types. Recent studies have shed light on the pivotal role played by macrophages in driving the regenerative response. However, our understanding of this critical role has primarily relied on static views obtained from fixed tissue biopsies. To overcome this limitation and gain insights into these interactions in real time, this study outlines a comprehensive protocol for culturing salivary gland tissue ex vivo and capturing live images of cell migration.
The protocol involves several key steps: First, mouse submandibular salivary gland tissue is carefully sliced using a vibratome and then cultured at an air-liquid interface. These slices can be intentionally injured, for instance, through exposure to radiation, to induce cellular damage and trigger the regenerative response. To track specific cells of interest, they can be endogenously labeled, such as by utilizing salivary gland tissue collected from genetically modified mice where a particular protein is marked with green fluorescent protein (GFP). Alternatively, fluorescently-conjugated antibodies can be employed to stain cells expressing specific cell surface markers of interest. Once prepared, the salivary gland slices are subjected to live imaging using a high-content confocal imaging system over a duration of 12 h, with images captured at 15 min intervals. The resulting images are then compiled to create a movie, which can subsequently be analyzed to extract valuable cell behavior parameters. This innovative method provides researchers with a powerful tool to investigate and better understand macrophage interactions within the salivary gland following injury, thereby advancing our knowledge of the regenerative processes at play in this dynamic biological context.

מחבר זרקור: חקר אינטראקציות מקרופאג'-אפיתל בין תאים בהתחדשות בלוטת הרוק לאחר פציעה 

Immunofluorescent imaging is constrained by the ability to observe complex, time-dependent biological processes in just a single snapshot in time. This study outlines a live-imaging approach conducted on precision-cut mouse submandibular gland slices. This approach allows for the real-time observation of cell-cell interactions during homeostasis and the processes of regeneration and repair.

חקירת אינטראקציות תאים-תאים בבלוטת הרוק באמצעות Ex Vivo Live Cell Imaging

Salivary gland regeneration is a complex process involving intricate interactions among various cell types. Recent studies have shed light on the pivotal ...

Isolation of Viable Multicellular Glands from Tissue of the Carnivorous Plant, Nepenthes

Summary

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Chapters in this video

בידוד לא מימי והעשרה של גבעול קפיטט בלוטי וטריכומות ססילה מקנאביס סאטיבה

Organoids כמודל למחלות זיהומיות: התרבות של האדם וOrganoids הקיבה Murine וMicroinjection של הליקובקטר פילורי

Microdissection של האלמנה השחורה עכביש המשי לייצור בלוטות

העכבר ואת האדם-נגזר תרבות ראשי קיבה אפיתל חד שכבתי לצורך המחקר של התחדשות

בידוד של תאי בסיס ותאי בלוטת Duct Submucosal מעכבר קנה נשימה

בידוד של תאים אפיתל הרוק מן הרוק בלוטות האדם עבור צמיחה מחוץ לתחום כמו סאליספירות או Monolayers

בידוד של ילודים extrahepatic Cholangiocytes

חקירת אינטראקציות תאים-תאים בבלוטת הרוק באמצעות Ex Vivo Live Cell Imaging

חקירת אינטראקציות תאים-תאים בבלוטת הרוק באמצעות Ex Vivo Live Cell Imaging

חקירת אינטראקציות תאים-תאים בבלוטת הרוק באמצעות Ex Vivo Live Cell Imaging