The authors thank Prof. Peter Imming and Diana M&#252;ller for synthesis of the Trityl spin probe and Prof. Sebastian Polarz, Martin Wessig and Andreas Schachtschneider for the synthesis of the porous materials. Financial support by the DFG (DR 743/7-1) and within the SPP 1570 is gratefully acknowledged.

<ol>
	<li>Sch&#252;th, F., Sing, K. S. W., Weitkamp, J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Handbook of Porous Solids. , (2002).</li><li>Hoffmann, F., Cornelius, M., Morell, J., Fr&#246;ba, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Silica-Based+Mesoporous+Organic-Inorganic+Hybrid+Materials.">Silica-Based Mesoporous Organic-Inorganic Hybrid Materials.</a> Angew. Chem. Int. Edit. 45 (20), 3216-3251 (2006).</li><li>Sanchez, C., Boissi&#232;re, C., Grosso, D., Laberty, C., Nicole, L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Design,+Synthesis,+and+Properties+of+Inorganic+and+Hybrid+Thin+Films+Having+Periodically+Organized+Nanoporosity.">Design, Synthesis, and Properties of Inorganic and Hybrid Thin Films Having Periodically Organized Nanoporosity.</a> Chem. of Mat. 20 (3), 682-737 (2008).</li><li>Le Bihan, D., Johansen-Berg, H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Diffusion+MRI+at+25:+Exploring+brain+tissue+structure+and+function.">Diffusion MRI at 25: Exploring brain tissue structure and function.</a> NeuroImage. 61 (2), 324-341 (2012).</li><li>Pregosin, P. S., Kumar, P. G. A., Fern&#225;ndez, I. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Pulsed+Gradient+Spin&#8722;Echo+(PGSE)+Diffusion+and+1H,19F+Heteronuclear+Overhauser+Spectroscopy+(HOESY)+NMR+Methods+in+Inorganic+and+Organometallic+Chemistry:+Something+Old+and+Something+New.">Pulsed Gradient Spin&#8722;Echo (PGSE) Diffusion and 1H,19F Heteronuclear Overhauser Spectroscopy (HOESY) NMR Methods in Inorganic and Organometallic Chemistry: Something Old and Something New.</a> Chem. Rev. 105 (8), 2977-2998 (2005).</li><li>Talmon, Y., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Molecular+diffusion+in+porous+media+by+PGS+ESR.">Molecular diffusion in porous media by PGS ESR.</a> Phys. Chem. Chem. Phys. 12 (23), 5998-6007 (2010).</li><li>Okazaki, M., Seelan, S., Toriyama, K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Condensation+process+of+alcohol+molecules+on+mesoporous+silica+MCM-41+and+SBA-15+and+fumed+silica:+a+spin-probe+ESR+study.">Condensation process of alcohol molecules on mesoporous silica MCM-41 and SBA-15 and fumed silica: a spin-probe ESR study.</a> Appl. Magn. Reson. 35 (3), 363-378 (2009).</li><li>Wessig, M., Spitzbarth, M., Drescher, M., Winter, R., Polarz, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Multiple+scale+investigation+of+molecular+diffusion+inside+functionalized+porous+hosts+using+a+combination+of+magnetic+resonance+methods.">Multiple scale investigation of molecular diffusion inside functionalized porous hosts using a combination of magnetic resonance methods.</a> Phys. Chem. Chem. Phys. 17 (24), 15976-15988 (2015).</li><li>Yakimchenko, O. E., Degtyarev, E. N., Parmon, V. N., Lebedev, Y. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Diffusion+in+Porous+Catalyst+Grains+as+Studied+by+EPR+Imaging.">Diffusion in Porous Catalyst Grains as Studied by EPR Imaging.</a> J. Phys. Chem. 99 (7), 2038-2041 (1995).</li><li>Cleary, D. A., Shin, Y. K., Schneider, D. J., Freed, J. H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Rapid+determination+of+translational+diffusion+coefficients+using+ESR+imaging.">Rapid determination of translational diffusion coefficients using ESR imaging.</a> J. Magn. Reson. 79 (3), 474-492 (1988).</li><li>Hornak, J. P., Moscicki, J. K., Schneider, D. J., Freed, J. H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Diffusion+coefficients+in+anisotropic+fluids+by+ESR+imaging+of+concentration+profiles.">Diffusion coefficients in anisotropic fluids by ESR imaging of concentration profiles.</a> J. Chem. Phys. 84 (6), 3387-3395 (1986).</li><li>Berliner, L. J., Fujii, H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=EPR+imaging+of+diffusional+processes+in+biologically+relevant+polymers.">EPR imaging of diffusional processes in biologically relevant polymers.</a> J. Magn. Reson. 69 (1), 68-72 (1986).</li><li>Degtyarev, Y. N., Schlick, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Diffusion+Coefficients+of+Small+Molecules+as+Guests+in+Various+Phases+of+Pluronic+L64+Measured+by+One-Dimensional+Electron+Spin+Resonance+Imaging.">Diffusion Coefficients of Small Molecules as Guests in Various Phases of Pluronic L64 Measured by One-Dimensional Electron Spin Resonance Imaging.</a> Langmuir. 15 (15), 5040-5047 (1999).</li><li>Marek, A., Labsk&#253;, J., Ko&#328;&#225;k, &. #. 2. 6. 8. ;., Pila&#345;, J., Schlick, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Translational+Diffusion+of+Paramagnetic+Tracers+in+HEMA+Gels+and+in+Concentrated+Solutions+of+PolyHEMA+by+1D+Electron+Spin+Resonance+Imaging.">Translational Diffusion of Paramagnetic Tracers in HEMA Gels and in Concentrated Solutions of PolyHEMA by 1D Electron Spin Resonance Imaging.</a> Macromolecules. 35 (14), 5517-5528 (2002).</li><li>Shin, Y. K., Ewert, U., Budil, D. E., Freed, J. H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Microscopic+versus+macroscopic+diffusion+in+model+membranes+by+electron+spin+resonance+spectral-spatial+imaging.">Microscopic versus macroscopic diffusion in model membranes by electron spin resonance spectral-spatial imaging.</a> Biophys. J. 59 (4), 950-957 (1991).</li><li>Spitzbarth, M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Simultaneous+Monitoring+of+Macroscopic+and+Microscopic+Diffusion+of+Guest+Molecules+in+Silica+and+Organosilica+Aerogels+by+Spatially+and+Time-Resolved+Electron+Paramagnetic+Resonance+Spectroscopy.">Simultaneous Monitoring of Macroscopic and Microscopic Diffusion of Guest Molecules in Silica and Organosilica Aerogels by Spatially and Time-Resolved Electron Paramagnetic Resonance Spectroscopy.</a> J. Phys. Chem. C. 119 (30), 17474-17479 (2015).</li><li>Kruczala, K., Schlick, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Measuring+Diffusion+Coefficients+of+Nitroxide+Radicals+in+Heterophasic+Propylene&#8722;Ethylene+Copolymers+by+Electron+Spin+Resonance+Imaging.">Measuring Diffusion Coefficients of Nitroxide Radicals in Heterophasic Propylene&#8722;Ethylene Copolymers by Electron Spin Resonance Imaging.</a> Macromolecules. 44 (2), 325-333 (2011).</li><li>Wessig, M., Drescher, M., Polarz, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Probing+Functional+Group+Specific+Surface+Interactions+in+Porous+Solids+Using+ESR+Spectroscopy+as+a+Sensitive+and+Quantitative+Tool.">Probing Functional Group Specific Surface Interactions in Porous Solids Using ESR Spectroscopy as a Sensitive and Quantitative Tool.</a> The J. Phys. Chem. C. 117 (6), 2805-2816 (2013).</li><li>Kuschel, A., Polarz, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Organosilica+Materials+with+Bridging+Phenyl+Derivatives+Incorporated+into+the+Surfaces+of+Mesoporous+Solids.">Organosilica Materials with Bridging Phenyl Derivatives Incorporated into the Surfaces of Mesoporous Solids.</a> Adv. Funct. Mater. 18 (8), 1272-1280 (2008).</li><li>Spitzbarth, M., Drescher, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Simultaneous+iterative+reconstruction+technique+software+for+spectral-spatial+EPR+imaging.">Simultaneous iterative reconstruction technique software for spectral-spatial EPR imaging.</a> J. Magn. Reson. 257, 79-88 (2015).</li><li>Stoll, S., Schweiger, A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=EasySpin,+a+comprehensive+software+package+for+spectral+simulation+and+analysis+in+EPR.">EasySpin, a comprehensive software package for spectral simulation and analysis in EPR.</a> J. Magn. Reson. 178 (1), 42-55 (2006).</li></ol>

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Il protocollo consente il monitoraggio della diffusione delle molecole ospiti paramagnetiche. Un approccio di imaging 1d è stato scelto perché permette una risoluzione temporale superiore rispetto all&#39;imaging 2D o 3D. L&#39;approccio 1d richiede un&#39;area di sezione trasversale costante del campione perché l&#39;intensità dell&#39;immagine 1d ottenuto dipende non solo dalla concentrazione ma anche l&#39;area della sezione trasversale del campione. Il metodo richiede inoltre che gli spettri EPR delle sonde di s...

Materiali porosi svolgono un ruolo importante nelle applicazioni pratiche quali la catalisi e la cromatografia 1. Con l&#39;aggiunta di gruppi di superficie e di regolare le proprietà di dimensione dei pori e di superficie, i materiali possono essere adattati all&#39;applicazione desiderata 2,3. La funzionalità del materiale poroso dipende essenzialmente le proprietà di diffusione delle molecole ospiti all&#39;interno dei pori. Nei materiali porosi, una distinzione deve essere fatta tra microscopico traslazionale costante di diffusione D micro, che descrive diffusione su una scala di lunghezza molecolare su un lato e la costante D macro macroscopica traslazionale diffusion d&#39;altra parte, che è influenzata dalla diffusione attraverso diversi pori, bordi di grano, tortuosità e disomogeneità del materiale. Esistono diversi metodi di risonanza magnetica è possibile studiare diffusione, ciascuno adatto per una partescala di lunghezza icular. Sulla scala millimetrica, risonanza magnetica nucleare (NMR) Imaging 4 ed elettronica risonanza paramagnetica (EPR) di imaging (come presentato in questo protocollo) può essere utilizzato. Scale più piccole diventano accessibili mediante l&#39;uso di gradienti di campo pulsati a NMR e EPR 5,6. Sulla scala nanometrica, spettroscopia EPR può essere utilizzato osservando cambiamenti dell&#39;interazione scambio Heisenberg tra le sonde di spin 7,8. Studi di diffusione traslazionale utilizzando Range Imaging EPR da catalizzatore industriale sostiene, ad esempio, ossido di alluminio 9, a anisotropi fluidi 10,11, sistemi di rilascio controllato di farmaci fatti di gel polimerici 12 - 14 e il modello membrane 15. Questo protocollo presenta un approccio in situ utilizzando immagini EPR per monitorare macroscopica traslazionale diffusione di sonde di spin in cilindrica, mezzi porosi. Si dimostra un sistema host-guest costituito da the nitrossido sonda di spin 3- (2-Iodoacetamido) -2,2,5,5-tetrametil-1-pyrrolidinyloxy (IPSL) come ospite all&#39;interno del organosilica mesoporosa periodica (PMO) aerogel UKON1-GEL come host e etanolo come solvente. Questo protocollo è stato usato con successo in precedenza 16 per confrontare D macro come determinato con l&#39;imaging EPR con D micro per i materiali di accoglienza UKON1-GEL e gel di silice e IPSL specie ospiti e Tris (8-carbossi-2,2,6,6-perdeutero-tetrametil-benzo [1,2-d : 4,5-d &#39;] bis (1,3) dithiole) metil (tritile), si veda la Figura 1. In altri metodi basati su onda continua (CW) EPR di imaging 17, la diffusione avviene al di fuori dello spettrometro. Al contrario, il metodo qui presentato utilizza un approccio situ. Una serie di istantanee della distribuzione di densità di spin 1d ρ 1d (t, γ) èconstatata durante un periodo di diverse ore. Durante questo tempo, una istantanea viene eseguita dopo l&#39;altro e fornisce un modello di diffusione in tempo reale con una risoluzione temporale di circa 5 min. UKON1-GEL e gel di silice sono stati sintetizzati in provette con diametro interno di 3 mm, come descritto in letteratura. 16,18,19 La UKON1-GEL e sintesi gel di silice porta ad un restringimento del campione. I campioni sono collocati all&#39;interno di un tubo di termorestringimento per impedire molecole ospiti di muoversi tra la aerogel e la parete della provetta. Questa fase aggiuntiva non è necessaria per campioni che possono essere sintetizzati nella provetta campione senza modificarne le dimensioni. I campioni di aerogel crollo quando si seccano, quindi devono essere immersi in solvente in ogni momento. La temperatura che è necessario per il tubo termoretraibile è superiore al punto di ebollizione di etanolo a pressione ambiente. Pertanto il protocollo descrive l&#39;uso di una pentola a pressione per sollevare ilpunto di ebollizione dell&#39;etanolo. Il protocollo riguarda la preparazione campione di UKON1-GEL sintetizzato anticipo per l&#39;esperimento di imaging EPR e le impostazioni spettrometro che vengono utilizzati per controllare la diffusione di spin probe IPSL. Per l&#39;analisi dei dati, software scritto localmente è fornito e il suo uso è descritto. I dati grezzi provenienti spettrometro possono essere caricati direttamente. Il software calcola la spaziale 1D distribuzione di densità di spin ρ 1D (t, γ) e tiene conto del profilo di sensibilità risonatore. L&#39;utente può selezionare una regione della aerogel e una finestra di tempo, durante il quale la costante diffusione è determinato. Il software determina quindi le condizioni al contorno della equazione di diffusione basati su tale selezione e risolve l&#39;equazione di diffusione. Esso supporta almeno il montaggio quadrato per trovare il valore di macro D dove la soluzione numerica corrisponde meglio i dati sperimentali. <p class = &quot;jove_content&quot;&gt; Il protocollo può essere utilizzato con regolazioni per diversi guest e host materiali purché l&#39;area della sezione trasversale del campione non cambia in tutto il campione, cioè ρ 1d (t, γ) dà accesso diretto la concentrazione e non è influenzato da un cambiamento della sezione trasversale del campione. L&#39;intervallo di valori accessibili per D macro è stimato 16 tra 10 -12 m 2 / sec e 7 · 10 -9 m 2 / sec.

<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>X-Band spectrometer</td>
			<td>Bruker</td>
			<td>E580</td>
			<td></td>
		</tr>
		<tr>
			<td>Spectrometer software</td>
			<td>Bruker</td>
			<td>Xepr 2.6b.108</td>
			<td></td>
		</tr>
		<tr>
			<td>gradient coil system</td>
			<td>Bruker</td>
			<td>E540 GCX2</td>
			<td></td>
		</tr>
		<tr>
			<td>imaging resonator</td>
			<td>Bruker</td>
			<td>TMHS 1007</td>
			<td></td>
		</tr>
		<tr>
			<td>micro-classic pipette controller</td>
			<td>Brand</td>
			<td>25900</td>
			<td></td>
		</tr>
		<tr>
			<td>microcapillary ringcaps 50 &#181;l</td>
			<td>Hirschmann</td>
			<td>9600150</td>
			<td>inner diameter 0.5 mm</td>
		</tr>
		<tr>
			<td>EPR sample tube 2 mm inner diameter</td>
			<td>Bruker</td>
			<td>ER 221TUB/2</td>
			<td></td>
		</tr>
		<tr>
			<td>EPR sample tube 4 mm inner diameter</td>
			<td>Bruker</td>
			<td>ER 221TUB/4</td>
			<td></td>
		</tr>
		<tr>
			<td>heat-shrink tubing DERAY-IB</td>
			<td>DSG-Canusa</td>
			<td>2210048952</td>
			<td>4.8 mm/2.4 mm, 2:1, 95 &#176;C - 200 &#176;C</td>
		</tr>
		<tr>
			<td>heat gun</td>
			<td>Bosch</td>
			<td>PHG 600-3</td>
			<td></td>
		</tr>
		<tr>
			<td>PTFE&#160; band</td>
			<td>VWR</td>
			<td>332362S</td>
			<td>width 12 mm</td>
		</tr>
		<tr>
			<td>test tube</td>
			<td></td>
			<td></td>
			<td>length 16 cm, diameter 1.5 cm</td>
		</tr>
		<tr>
			<td>beaker</td>
			<td></td>
			<td></td>
			<td>250 ml, height 9 cm, diameter 7 cm</td>
		</tr>
		<tr>
			<td>capillary tube sealing</td>
			<td>Fisher Scientific</td>
			<td>02-678</td>
			<td></td>
		</tr>
		<tr>
			<td>pressure cooker, 3l with trivet</td>
			<td>Beem</td>
			<td>Vital-X-Press V2, F1000675</td>
			<td></td>
		</tr>
		<tr>
			<td>magnetic stirrer with heating element</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>ethanol (p.a.)</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>ethanol (techn.)</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>syringe</td>
			<td>Hamilton</td>
			<td>1705</td>
			<td>0.05 ml, custom length: 20 cm,</td>
		</tr>
		<tr>
			<td>Pasteur capillary pipette</td>
			<td></td>
			<td></td>
			<td>length 23 cm</td>
		</tr>
		<tr>
			<td>data analysis software</td>
			<td>homemade</td>
			<td></td>
			<td>Available for download at http://www.uni-konstanz.de/drescher/software. Requires Matlab.</td>
		</tr>
		<tr>
			<td>UKON1-GEL</td>
			<td>kindly provided by Prof. Sebastian Polarz, Martin Wessig and Andreas Schachtschneider&#160;</td>
			<td></td>
			<td>See references 16, 18, 19 for the synthesis</td>
		</tr>
	</tbody>
</table>

in situ monitoring of diffusion of guest molecules in porous media using electron paramagnetic resonance imaging

A method is demonstrated to monitor macroscopic translational diffusion using electron paramagnetic resonance (EPR) imaging. A host-guest system with nitroxide spin probe 3-(2-Iodoacetamido)-2,2,5,5-tetramethyl-1-pyrrolidinyloxy (IPSL) as a guest inside the periodic mesoporous organosilica (PMO) aerogel UKON1-GEL as a host and ethanol as a solvent is used as an example to describe the protocol. Data is shown from a previous publication, where the protocol has been applied to both IPSL and Tris(8-carboxy-2,2,6,6-perdeutero-tetramethyl-benzo[1,2-d:4,5-d&#8242;]bis(1,3)dithiole) methyl (Trityl) as guest molecules and UKON1-GEL and SILICA-GEL as host systems. 
A method is shown to prepare aerogel samples that cannot be synthesized directly in the sample tube for measurement due to a size change during synthesis. The aerogel is attached to sample tubes using heat shrink tubing and a pressure cooker to reach the necessary temperature without evaporating the solvent in the process. The method does not assume a clearly defined initial distribution of guest molecules at the start of the measurement. Instead, it requires a reservoir on top of the aerogel and experimentally determines the influx rate during data analysis.
The diffusion is monitored continually over a period of 20 hr by recording the 1d spin density profile within the sample. The spectrometer settings for the imaging experiment are described quantitatively. Data analysis software is provided to take the resonator sensitivity profile into account and to numerically solve the diffusion equation. The software determines the macroscopic translational diffusion coefficient by least square minimization of the difference between the experiment and the numerical solution of the diffusion equation.

Una foto e schematica di un aerogel entro il tubo contrazione è mostrato nelle figure 2a e 2b. L&#39;immagine EPR 2d in figura 2c mostra chiaramente il bordo superiore del aerogel. L&#39;intensità di 1d ρ all&#39;interno del tubo del campione sopra la aerogel è inferiore anche se la concentrazione della sonda spin è almeno alto come nel aerogel. Tuttavia, la profondità del campione perpendicolare al piano del qu...

Watch this Scientific Journal Video about In Situ Monitoring of Diffusion of Guest Molecules in Porous Media Using Electron Paramagnetic Resonance Imaging at JoVE.com

In Situ Monitoring of Diffusion of Guest Molecules in Porous Media Using Electron Paramagnetic Resonance Imaging

A protocol for the in situ monitoring of the diffusion of guest molecules in porous media using electron paramagnetic resonance (EPR) imaging is presented.

In Situ Monitoraggio della diffusione di Guest Molecole in mezzi porosi Utilizzando paramagnetica elettronica Risonanza

A method is demonstrated to monitor macroscopic translational diffusion using electron paramagnetic resonance (EPR) imaging. A host-guest system with ...

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In Situ Monitoring of Diffusion of Guest Molecules in Porous Media Using Electron Paramagnetic Resonance Imaging

6.3K Views.  Universität Konstanz. A protocol for the in situ monitoring of the diffusion of guest molecules in porous media using electron paramagnetic resonance (EPR) imaging is presented.

Video: In Situ Monitoring of Diffusion of Guest Molecules in Porous Media Using Electron Paramagnetic Resonance Imaging

Exploring the Radical Nature of a Carbon Surface by Electron Paramagnetic Resonance and a Calibrated Gas Flow

While the first Electron Paramagnetic Resonance (EPR) studies regarding the effects of oxidation on the structure and stability of carbon radicals date back to the early 1980s the focus of these early papers primarily characterized the changes to the structures under extremely harsh conditions (pH or temperature)1-3. It is also known that paramagnetic molecular oxygen undergoes a Heisenberg spin exchange interaction with stable radicals that extremely broadens the EPR signal4-6. Recently, we reported interesting results where this interaction of molecular oxygen with a certain part of the existing stable radical structure can be reversibly affected simply by flowing a diamagnetic gas through the carbon samples at STP7. As flows of He, CO2, and N2 had a similar effect these interactions occur at the surface area of the macropore system.
This manuscript highlights the experimental techniques, work-up, and analysis towards affecting the existing stable radical nature in the carbon structures. It is hoped that it will help towards further development and understanding of these interactions in the community at large.

Stable radicals that are present in carbon substrates interact with paramagnetic oxygen through a Heisenberg spin exchange. This interaction can be significantly reduced under STP conditions by flowing a diamagnetic gas over the carbon system. This manuscript describes a simple method to characterize the nature of those radicals.

Esplorare la natura radicale di una superficie Carbonio Electron risonanza paramagnetica e calibrato di flusso del gas

While the first Electron Paramagnetic Resonance (EPR) studies regarding the effects of oxidation on the structure and stability of carbon radicals date ...

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Chimica

Sequencing of Plant Wall Heteroxylans Using Enzymic, Chemical (Methylation) and Physical (Mass Spectrometry, Nuclear Magnetic Resonance) Techniques

This protocol describes the specific techniques used for the characterization of reducing end (RE) and internal region glycosyl sequence(s) of heteroxylans. De-starched wheat endosperm cell walls were isolated as an alcohol-insoluble residue (AIR)1 and sequentially extracted with water (W-sol Fr) and 1 M KOH containing 1% NaBH4 (KOH-sol Fr) as described by Ratnayake et al. (2014)2. Two different approaches (see summary in Figure 1) are adopted. In the first, intact W-sol AXs are treated with 2AB to tag the original RE backbone chain sugar residue and then treated with an endoxylanase to generate a mixture of 2AB-labelled RE and internal region reducing oligosaccharides, respectively. In a second approach, the KOH-sol Fr is hydrolyzed with endoxylanase to first generate a mixture of oligosaccharides which are subsequently labelled with 2AB. The enzymically released ((un)tagged) oligosaccharides from both W- and KOH-sol Frs are then methylated and the detailed structural analysis of both the native and methylated oligosaccharides is performed using a combination of MALDI-TOF-MS, RP-HPLC-ESI-QTOF-MS and ESI-MSn. Endoxylanase digested KOH-sol AXs are also characterized by nuclear magnetic resonance (NMR) that also provides information on the anomeric configuration. These techniques can be applied to other classes of polysaccharides using the appropriate endo-hydrolases.

Sequencing of Plant Wall Heteroxylans Using Enzymic, Chemical Methylation and Physical Mass Spectrometry, Nuclear Magnetic Resonance Techniques

This protocol describes the specific techniques used for the structural characterization of reducing end (RE) and internal region glycosyl sequence(s) of heteroxylans by tagging the RE with 2 aminobenzamide prior to enzymatic (endoxylanase) hydrolysis and then analysis of the resultant oligosaccharides using mass spectrometry (MS) and nuclear magnetic resonance (NMR).

Il sequenziamento di Plant parete Heteroxylans Utilizzando enzimatica, chimica (metilazione) e (Spettrometria di Massa, Risonanza Magnetica Nucleare) tecniche fisiche

This protocol describes the specific techniques used for the characterization of reducing end (RE) and internal region glycosyl sequence(s) of ...

Preparation and In Vitro Characterization of Dendrimer-based Contrast Agents for Magnetic Resonance Imaging

Paramagnetic complexes of gadolinium(III) with acyclic or macrocyclic chelates are the most commonly used contrast agents (CAs) for magnetic resonance imaging (MRI). Their purpose is to enhance the relaxation rate of water protons in tissue, thus increasing the MR image contrast and the specificity of the MRI measurements. Current clinically approved contrast agents are low molecular weight molecules that are rapidly cleared from the body. The use of dendrimers as carriers of paramagnetic chelators can play an important role in the future development of more efficient MRI contrast agents. Specifically, the increase in local concentration of the paramagnetic species results in a higher signal contrast. Furthermore, this CA provides a longer tissue retention time due to its high molecular weight and size. Here, we demonstrate a convenient procedure for the preparation of macromolecular MRI contrast agents based on poly(amidoamine) (PAMAM) dendrimers with monomacrocyclic DOTA-type chelators (DOTA &#8211; 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetate). The chelating unit was appended by exploiting the reactivity of the isothiocyanate (NCS) group towards the amine surface groups of the PAMAM dendrimer to form thiourea bridges. Dendrimeric products were purified and analyzed by means of nuclear magnetic resonance spectroscopy, mass spectrometry, and elemental analysis. Finally, high resolution MR images were recorded and the signal contrasts obtained from the prepared dendrimeric and the commercially available monomeric agents were compared.

Preparation and In Vitro Characterization of Dendrimer-based Contrast Agents for Magnetic Resonance Imaging

This protocol describes the preparation and characterization of a dendrimeric magnetic resonance imaging (MRI) contrast agent that carries cyclen-based macrocyclic chelates coordinating paramagnetic gadolinium ions. In a series of MRI experiments in vitro, this agent produced an amplified MRI signal when compared to the commercially available monomeric analogue.

Preparazione e<em&gt; In Vitro</em&gt; Caratterizzazione del dendrimero a base di agenti di contrasto per risonanza magnetica

Paramagnetic complexes of gadolinium(III) with acyclic or macrocyclic chelates are the most commonly used contrast agents (CAs) for magnetic resonance ...

In Situ Characterization of Boehmite Particles in Water Using Liquid SEM

In situ imaging and elemental analysis of boehmite (AlOOH) particles in water is realized using the System for Analysis at the Liquid Vacuum Interface (SALVI) and Scanning Electron Microscopy (SEM). This paper describes the method and key steps in integrating the vacuum compatible SAVLI to SEM and obtaining secondary electron (SE) images of particles in liquid in high vacuum. Energy dispersive x-ray spectroscopy (EDX) is used to obtain elemental analysis of particles in liquid and control samples including deionized (DI) water only and an empty channel as well. Synthesized boehmite (AlOOH) particles suspended in liquid are used as a model in the liquid SEM illustration. The results demonstrate that the particles can be imaged in the SE mode with good resolution (i.e., 400 nm). The AlOOH EDX spectrum shows significant signal from the aluminum (Al) when compared with the DI water and the empty channel control. In situ liquid SEM is a powerful technique to study particles in liquid with many exciting applications. This procedure aims to provide technical know-how in order to conduct liquid SEM imaging and EDX analysis using SALVI and to reduce potential pitfalls when using this approach.

In Situ Characterization of Boehmite Particles in Water Using Liquid SEM

We present a procedure for real-time imaging and elemental composition analysis of boehmite particles in deionized water by in situ liquid Scanning Electron Microscopy.

In Situ Caratterizzazione delle particelle Boehmite in acqua usando liquido SEM

In situ imaging and elemental analysis of boehmite (AlOOH) particles in water is realized using the System for Analysis at the Liquid Vacuum Interface ...

Microfluidic Chips for In Situ Crystal X-ray Diffraction and In Situ Dynamic Light Scattering for Serial Crystallography

This protocol describes fabricating microfluidic devices with low X-ray background optimized for goniometer based fixed target serial crystallography. The devices are patterned from epoxy glue using soft lithography and are suitable for in situ X-ray diffraction experiments at room temperature. The sample wells are lidded on both sides with polymeric polyimide foil windows that allow diffraction data collection with low X-ray background. This fabrication method is undemanding and inexpensive. After the sourcing of a SU-8 master wafer, all fabrication can be completed outside of a cleanroom in a typical research lab environment. The chip design and fabrication protocol utilize capillary valving to microfluidically split an aqueous reaction into defined nanoliter sized droplets. This loading mechanism avoids the sample loss from channel dead-volume and can easily be performed manually without using pumps or other equipment for fluid actuation. We describe how isolated nanoliter sized drops of protein solution can be monitored in situ by dynamic light scattering to control protein crystal nucleation and growth. After suitable crystals are grown, complete X-ray diffraction datasets can be collected using goniometer based in situ fixed target serial X-ray crystallography at room temperature. The protocol provides custom scripts to process diffraction datasets using a suite of software tools to solve and refine the protein crystal structure. This approach avoids the artefacts possibly induced during cryo-preservation or manual crystal handling in conventional crystallography experiments. We present and compare three protein structures that were solved using small crystals with dimensions of approximately 10-20 &#181;m grown in chip. By crystallizing and diffracting in situ, handling and hence mechanical disturbances of fragile crystals is minimized. The protocol details how to fabricate a custom X-ray transparent microfluidic chip suitable for in situ serial crystallography. As almost every crystal can be used for diffraction data collection, these microfluidic chips are a very efficient crystal delivery method.

Microfluidic Chips for In Situ Crystal X-ray Diffraction and In Situ Dynamic Light Scattering for Serial Crystallography

This protocol describes in detail how to fabricate and operate microfluidic devices for X-ray diffraction data collection at room temperature. Additionally, it describes how to monitor protein crystallization by dynamic light scattering and how to process and analyze obtained diffraction data.

Chip microfluidici per dispersione della luce dinamica In Situ diffrazione di raggi x di cristallo ed In Situ per la cristallografia seriale

This protocol describes fabricating microfluidic devices with low X-ray background optimized for goniometer based fixed target serial crystallography. The ...

Using Graphene Liquid Cell Transmission Electron Microscopy to Study in Situ Nanocrystal Etching

Graphene liquid cell electron microscopy provides the ability to observe nanoscale chemical transformations and dynamics as the reactions are occurring in liquid environments. This manuscript describes the process for making graphene liquid cells through the example of graphene liquid cell transmission electron microscopy (TEM) experiments of gold nanocrystal etching. The protocol for making graphene liquid cells involves coating gold, holey-carbon TEM grids with chemical vapor deposition graphene and then using those graphene-coated grids to encapsulate liquid between two graphene surfaces. These pockets of liquid, with the nanomaterial of interest, are imaged in the electron microscope to see the dynamics of the nanoscale process, in this case the oxidative etching of gold nanorods. By controlling the electron beam dose rate, which modulates the etching species in the liquid cell, the underlying mechanisms of how atoms are removed from nanocrystals to form different facets and shapes can be better understood. Graphene liquid cell TEM has the advantages of high spatial resolution, compatibility with traditional TEM holders, and low start-up costs for research groups. Current limitations include delicate sample preparation, lack of flow capability, and reliance on electron beam-generated radiolysis products to induce reactions. With further development and control, graphene liquid cell may become a ubiquitous technique in nanomaterials and biology, and is already being used to study mechanisms governing growth, etching, and self-assembly processes of nanomaterials in liquid on the single particle level.

Using Graphene Liquid Cell Transmission Electron Microscopy to Study in Situ Nanocrystal Etching

Graphene liquid cell electron microscopy can be used to observe nanocrystal dynamics in a liquid environment with greater spatial resolution than other liquid cell electron microscopy techniques. Etching premade nanocrystals and following their shape using graphene liquid cell Transmission Electron Microscopy can yield important mechanistic information about nanoparticle transformations.

Usando la microscopia elettronica di trasmissione di Graphene liquido cellulare per studiare in Situ nanocristallo acquaforte

Graphene liquid cell electron microscopy provides the ability to observe nanoscale chemical transformations and dynamics as the reactions are occurring in ...

Photoelectron Imaging of Anions Illustrated by 310 Nm Detachment of F&#8722;

Anion photoelectron imaging is a very efficient method for the study of energy states of bound negative ions, neutral species and interactions of unbound electrons with neutral molecules/atoms. State-of-the-art in vacuo anion generation techniques allow application to a broad range of atomic, molecular, and cluster anion systems. These are separated and selected using time-of-flight mass spectrometry. Electrons are removed by linearly polarized photons (photo detachment) using table-top laser sources which provide ready access to excitation energies from the infra-red to the near ultraviolet. Detecting the photoelectrons with a velocity mapped imaging lens and position sensitive detector means that, in principle, every photoelectron reaches the detector and the detection efficiency is uniform for all kinetic energies. Photoelectron spectra extracted from the images via mathematical reconstruction using an inverse Abel transformation reveal details of the anion internal energy state distribution and the resultant neutral energy states. At low electron kinetic energy, typical resolution is sufficient to reveal energy level differences on the order of a few millielectron-volts, i.e., different vibrational levels for molecular species or spin-orbit splitting in atoms. Photoelectron angular distributions extracted from the inverse Abel transformation represent the signatures of the bound electron orbital, allowing more detailed probing of electronic structure. The spectra and angular distributions also encode details of the interactions between the outgoing electron and the residual neutral species subsequent to excitation. The technique is illustrated by the application to an atomic anion (F&#8722;), but it can also be applied to the measurement of molecular anion spectroscopy, the study of low lying anion resonances (as an alternative to scattering experiments) and femtosecond (fs) time resolved studies of the dynamic evolution of anions.

Here, we present a protocol for photoelectron imaging of anionic species. Anions generated in vacuo and separated by mass spectrometry are probed using velocity mapped photoelectron imaging, providing details of anion and neutral energy levels, anion and neutral structure and the nature of the anion electronic state.

Imaging di fotoelettroni di anioni illustrato da 310 Nm distaccamento di F−

Anion photoelectron imaging is a very efficient method for the study of energy states of bound negative ions, neutral species and interactions of unbound ...

Heterogeneous Removal of Water-Soluble Ruthenium Olefin Metathesis Catalyst from Aqueous Media Via Host-Guest Interaction

A highly efficient transition metal catalyst removal method is developed. The water-soluble catalyst contains a newly-designed NHC ligand for the catalyst removal via host-guest interactions. The new NHC ligand possesses an adamantyl (guest) tethered linear ethylene glycol units for hydrophobic inclusion into the cavity of a &#946;-cyclodextrin (&#946;-CD) host compound. The new NHC ligand was applied to a Ru-based olefin metathesis catalyst. The Ru catalyst demonstrated excellent activity in representative ring-closing metathesis (RCM) and ring-opening metathesis polymerization (ROMP) reactions in aqueous media as well as organic solvent, CH2Cl2. After the reaction was complete, the lingering Ru residue was removed from the aqueous solution with the efficiency of more than 99% (53 ppm of Ru residue) by simple filtration utilizing a host-guest interaction between insoluble silica-grafted &#946;-CD (host) and the adamantyl moiety (guest) on the catalyst. The new Ru catalyst also demonstrated high removal efficiency via extraction when the reaction is run in organic solvent by partitioning the crude reaction mixture between layers of diethyl ether and water. In this way, the catalyst stays in aqueous layer only. In organic layer, the residual Ru amount was only 0.14 ppm in the RCM reactions of diallyl compounds.

A removable water-soluble N-heterocyclic carbene (NHC) ligand in aqueous media via host-guest interaction has been developed. We demonstrated representative olefin metathesis reactions in water as well as in dichloromethane. Via either host-guest interaction or extraction, the residual ruthenium (Ru) catalyst was as low as 0.14 ppm after the reaction.

Rimozione eterogenei di rutenio solubile in acqua dell'olefina metatesi catalizzatore da mezzi acquosi tramite interazione Host-Guest

A highly efficient transition metal catalyst removal method is developed. The water-soluble catalyst contains a newly-designed NHC ligand for the catalyst ...

Pretargeted Radioimmunotherapy Based on the Inverse Electron Demand Diels-Alder Reaction

While radioimmunotherapy (RIT) is a promising approach for the treatment of cancer, the long pharmacokinetic half-life of radiolabeled antibodies can result in high radiation doses to healthy tissues. Perhaps not surprisingly, several different strategies have been developed to circumvent this troubling limitation. One of the most promising of these approaches is pretargeted radioimmunotherapy (PRIT). PRIT is predicated on decoupling the radionuclide from the immunoglobulin, injecting them separately, and then allowing them to combine in vivo at the target tissue. This approach harnesses the exceptional tumor-targeting properties of antibodies while skirting their pharmacokinetic drawbacks, thereby lowering radiation doses to non-target tissues and facilitating the use of radionuclides with half-lives that are considered too short for use in traditional radioimmunoconjugates. Over the last five years, our laboratory and others have developed an approach to in vivo pretargeting based on the inverse electron-demand Diels-Alder (IEDDA) reaction between trans-cyclooctene (TCO) and tetrazine (Tz). This strategy has been successfully applied to pretargeted positron emission tomography (PET) and single-photon emission computed tomography (SPECT) imaging with a variety of antibody-antigen systems. In a pair of recent publications, we have demonstrated the efficacy of IEDDA-based PRIT in murine models of pancreatic ductal adenocarcinoma and colorectal carcinoma. In this protocol, we describe protocols for PRIT using a 177Lu-DOTA-labeled tetrazine radioligand ([177Lu]Lu-DOTA-PEG7-Tz) and a TCO-modified variant of the colorectal cancer targeting huA33 antibody (huA33-TCO). More specifically, we will describe the construction of huA33-TCO, the synthesis and radiolabeling of [177Lu]Lu-DOTA-PEG7-Tz, and the performance of in vivo biodistribution and longitudinal therapy studies in murine models of colorectal carcinoma.

This protocol describes the synthesis and characterization of a trans-cyclooctene (TCO)-modified antibody and a 177Lu-labeled tetrazine (Tz) radioligand for pretargeted radioimmunotherapy (PRIT). In addition, it details the use of these two constructs for in vivo biodistribution and longitudinal therapy studies in a murine model of colorectal cancer.

Pretargeted Radioimmunotherapy basato sulla reazione di Diels-Alder domanda inversa Electron

While radioimmunotherapy (RIT) is a promising approach for the treatment of cancer, the long pharmacokinetic half-life of radiolabeled antibodies can ...

Preparation of Graphene-Supported Microwell Liquid Cells for In Situ Transmission Electron Microscopy

The fabrication and preparation of graphene-supported microwell liquid cells (GSMLCs) for in situ electron microscopy is presented in a stepwise protocol. The versatility of the GSMLCs is demonstrated in the context of a study about etching and growth dynamics of gold nanostructures from a HAuCl4 precursor solution. GSMLCs combine the advantages of conventional silicon- and graphene-based liquid cells by offering reproducible well depths together with facile cell manufacturing and handling of the specimen under investigation. The GSMLCs are fabricated on a single silicon substrate which drastically reduces the complexity of the manufacturing process compared to two-wafer-based liquid cell designs. Here, no bonding or alignment process steps are required. Furthermore, the enclosed liquid volume can be tailored to the respective experimental requirements by simply adjusting the thickness of a silicon nitride layer. This enables a significant reduction of window bulging in the electron microscope vacuum. Finally, a state-of-the-art quantitative evaluation of single particle tracking and dendrite formation in liquid cell experiments using only open source software is presented.

Preparation of Graphene-Supported Microwell Liquid Cells for In Situ Transmission Electron Microscopy

A protocol for preparation of graphene-supported microwell liquid cells for in situ electron microscopy of gold nanocrystals from HAuCl4 precursor solution is presented. Furthermore, an analysis routine is presented to quantify observed etching and growth dynamics.

Preparazione di cellule liquide microwell supportate al grafene per la microscopia elettronica di trasmissione in situ

The fabrication and preparation of graphene-supported microwell liquid cells (GSMLCs) for in situ electron microscopy is presented in a stepwise protocol. ...