Department of Genetics,
Cell Biology & Development and Center for Genome Engineering,
Department of Genetics, Cell Biology & Development and Center for Genome Engineering
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Translational recoding signals between gag and pol in diverse LTR retrotransposons.
RNA (New York, N.Y.) Dec, 2003 | Pubmed ID: 14623998
Athila4 of Arabidopsis and Calypso of soybean define a lineage of endogenous plant retroviruses.
Genome research Jan, 2002 | Pubmed ID: 11779837
Ty5 gag mutations increase retrotransposition and suggest a role for hydrogen bonding in the function of the nucleocapsid zinc finger.
Journal of virology Apr, 2002 | Pubmed ID: 11884548
Common physical properties of DNA affecting target site selection of sleeping beauty and other Tc1/mariner transposable elements.
Journal of molecular biology Oct, 2002 | Pubmed ID: 12381300
Genes of the Pseudoviridae (Ty1/copia retrotransposons).
Molecular biology and evolution Nov, 2002 | Pubmed ID: 12411593
The soybean retroelement SIRE1 uses stop codon suppression to express its envelope-like protein.
EMBO reports Mar, 2003 | Pubmed ID: 12634845
Controlling integration specificity of a yeast retrotransposon.
Proceedings of the National Academy of Sciences of the United States of America May, 2003 | Pubmed ID: 12730380
SIRE1, an endogenous retrovirus family from Glycine max, is highly homogeneous and evolutionarily young.
Molecular biology and evolution Aug, 2003 | Pubmed ID: 12777503
CEN plasmid segregation is destabilized by tethered determinants of Ty 5 integration specificity: a role for double-strand breaks in CEN antagonism.
Chromosoma Aug, 2003 | Pubmed ID: 12883945
The diversity of LTR retrotransposons.
Genome biology , 2004 | Pubmed ID: 15186483
Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae.
Genome biology , 2004 | Pubmed ID: 15461796
A eukaryotic gene family related to retroelement integrases.
Trends in genetics : TIG Mar, 2005 | Pubmed ID: 15734571
SplitTester: software to identify domains responsible for functional divergence in protein family.
BMC bioinformatics , 2005 | Pubmed ID: 15929795
The Sireviruses, a plant-specific lineage of the Ty1/copia retrotransposons, interact with a family of proteins related to dynein light chain 8.
Plant physiology Oct, 2005 | Pubmed ID: 16183843
High-frequency homologous recombination in plants mediated by zinc-finger nucleases.
The Plant journal : for cell and molecular biology Nov, 2005 | Pubmed ID: 16262717
Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly.
Nature protocols , 2006 | Pubmed ID: 17406455
Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool.
Nucleic acids research Jul, 2007 | Pubmed ID: 17526515
Phosphorylation regulates integration of the yeast Ty5 retrotransposon into heterochromatin.
Molecular cell Jul, 2007 | Pubmed ID: 17643377
Retrotransposon target site selection by imitation of a cellular protein.
Molecular and cellular biology Feb, 2008 | Pubmed ID: 18086891
Genomics: fighting fire with fire.
Nature Jan, 2008 | Pubmed ID: 18216844
Chromodomains direct integration of retrotransposons to heterochromatin.
Genome research Mar, 2008 | Pubmed ID: 18256242
Targeting integration of the Saccharomyces Ty5 retrotransposon.
Methods in molecular biology (Clifton, N.J.) , 2008 | Pubmed ID: 18370074
Unexpected failure rates for modular assembly of engineered zinc fingers.
Nature methods May, 2008 | Pubmed ID: 18446154
Rapid "open-source" engineering of customized zinc-finger nucleases for highly efficient gene modification.
Molecular cell Jul, 2008 | Pubmed ID: 18657511
Zinc Finger Database (ZiFDB): a repository for information on C2H2 zinc fingers and engineered zinc-finger arrays.
Nucleic acids research Jan, 2009 | Pubmed ID: 18812396
An affinity-based scoring scheme for predicting DNA-binding activities of modularly assembled zinc-finger proteins.
Nucleic acids research Feb, 2009 | Pubmed ID: 19056825
High-frequency modification of plant genes using engineered zinc-finger nucleases.
Nature May, 2009 | Pubmed ID: 19404258
Oligomerized pool engineering (OPEN): an 'open-source' protocol for making customized zinc-finger arrays.
Nature protocols , 2009 | Pubmed ID: 19798082
Plant science. DNA binding made easy.
Science (New York, N.Y.) Dec, 2009 | Pubmed ID: 20007890
Welcome to mobile DNA.
Mobile DNA , 2010 | Pubmed ID: 20226071
ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool.
Nucleic acids research Jul, 2010 | Pubmed ID: 20435679
High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases.
Proceedings of the National Academy of Sciences of the United States of America Jun, 2010 | Pubmed ID: 20508152
Targeting DNA double-strand breaks with TAL effector nucleases.
Genetics Oct, 2010 | Pubmed ID: 20660643
Retrotransposon vectors for gene delivery in plants.
Mobile DNA , 2010 | Pubmed ID: 20678194
A transient assay for monitoring zinc finger nuclease activity at endogenous plant gene targets.
Methods in molecular biology (Clifton, N.J.) , 2010 | Pubmed ID: 20680843
Meeting report for mobile DNA 2010.
Mobile DNA , 2010 | Pubmed ID: 20735816
Predicting success of oligomerized pool engineering (OPEN) for zinc finger target site sequences.
BMC bioinformatics , 2010 | Pubmed ID: 21044337
Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA).
Nature methods Jan, 2011 | Pubmed ID: 21151135
Targeted mutagenesis in Arabidopsis using zinc-finger nucleases.
Methods in molecular biology (Clifton, N.J.) , 2011 | Pubmed ID: 21181530
ZFNGenome: a comprehensive resource for locating zinc finger nuclease target sites in model organisms.
BMC genomics , 2011 | Pubmed ID: 21276248
Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases.
Plant physiology Jun, 2011 | Pubmed ID: 21464476
Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting.
Nucleic acids research Jul, 2011 | Pubmed ID: 21493687
Access to DNA establishes a secondary target site bias for the yeast retrotransposon Ty5.
Proceedings of the National Academy of Sciences of the United States of America Dec, 2011 | Pubmed ID: 21788500
A TALE of two nucleases: gene targeting for the masses?
Zebrafish Sep, 2011 | Pubmed ID: 21929364
TAL effectors: customizable proteins for DNA targeting.
Science (New York, N.Y.) Sep, 2011 | Pubmed ID: 21960622
A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon.
Genome research Apr, 2012 | Pubmed ID: 22219511
TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction.
Nucleic acids research Jul, 2012 | Pubmed ID: 22693217
Simple methods for generating and detecting locus-specific mutations induced with TALENs in the zebrafish genome.
PLoS genetics , 2012 | Pubmed ID: 22916025
In vivo genome editing using a high-efficiency TALEN system.
Nature Nov, 2012 | Pubmed ID: 23000899
Efficient TALEN-mediated gene knockout in livestock.
Proceedings of the National Academy of Sciences of the United States of America Oct, 2012 | Pubmed ID: 23027955
Targeting G with TAL effectors: a comparison of activities of TALENs constructed with NN and NK repeat variable di-residues.
PloS one , 2012 | Pubmed ID: 23028976
Transcription activator-like effector nucleases enable efficient plant genome engineering.
Plant physiology Jan, 2013 | Pubmed ID: 23124327
Zinc Finger Database (ZiFDB) v2.0: a comprehensive database of C₂H₂ zinc fingers and engineered zinc finger arrays.
Nucleic acids research Jan, 2013 | Pubmed ID: 23203887
Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways.
Genome research Mar, 2013 | Pubmed ID: 23282329
Rapid and efficient gene modification in rice and Brachypodium using TALENs.
Molecular plant Jul, 2013 | Pubmed ID: 23288864
Reviewer acknowledgement 2013.
Mobile DNA , 2013 | Pubmed ID: 23406649
Plant genome engineering with sequence-specific nucleases.
Annual review of plant biology , 2013 | Pubmed ID: 23451779
TALEN-based gene correction for epidermolysis bullosa.
Molecular therapy : the journal of the American Society of Gene Therapy Jun, 2013 | Pubmed ID: 23546300
Compact designer TALENs for efficient genome engineering.
Nature communications , 2013 | Pubmed ID: 23612303
TALEN-mediated editing of the mouse Y chromosome.
Nature biotechnology May, 2013 | Pubmed ID: 23666012
TAL effector nucleases induce mutations at a pre-selected location in the genome of primary barley transformants.
Plant molecular biology Oct, 2013 | Pubmed ID: 23689819
TAL effectors: highly adaptable phytobacterial virulence factors and readily engineered DNA-targeting proteins.
Trends in cell biology Aug, 2013 | Pubmed ID: 23707478
Comparing zinc finger nucleases and transcription activator-like effector nucleases for gene targeting in Drosophila.
G3 (Bethesda, Md.) Oct, 2013 | Pubmed ID: 23979928
Targeted deletion and inversion of tandemly arrayed genes in Arabidopsis thaliana using zinc finger nucleases.
G3 (Bethesda, Md.) Oct, 2013 | Pubmed ID: 23979943
Targeted mutagenesis of Arabidopsis thaliana using engineered TAL effector nucleases.
G3 (Bethesda, Md.) Oct, 2013 | Pubmed ID: 23979944
Targeted mutagenesis for functional analysis of gene duplication in legumes.
Methods in molecular biology (Clifton, N.J.) , 2013 | Pubmed ID: 23996306
Tailor-made mutations in Arabidopsis using zinc finger nucleases.
Methods in molecular biology (Clifton, N.J.) , 2014 | Pubmed ID: 24057367
TALEN-engineered AR gene rearrangements reveal endocrine uncoupling of androgen receptor in prostate cancer.
Proceedings of the National Academy of Sciences of the United States of America Oct, 2013 | Pubmed ID: 24101480
TAL effector specificity for base 0 of the DNA target is altered in a complex, effector- and assay-dependent manner by substitutions for the tryptophan in cryptic repeat -1.
PloS one , 2013 | Pubmed ID: 24312634
DNA replicons for plant genome engineering.
The Plant cell Jan, 2014 | Pubmed ID: 24443519
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