tracking-quantifying-developmental-processes-c-elegans-using-open

Tracking and Quantifying Developmental Processes in <em>C. elegans</em> Using Open-source Tools

Quantitatively capturing developmental processes is crucial to derive mechanistic models and key to identify and describe mutant phenotypes. Here ...

Goethe University

TonB dependent transporters (TBDT) are an essential protein family in bacteria involved in the uptake of a broad variety of molecules such as siderophore-chelated iron, which was the first described substrate. Meanwhile it is known that TBDTs are involved in the uptake of many metals, sugars and polypeptides. The action of TBDTs is regulated and energized by the plasma membrane anchored TonB, which is charged by a proton pump. The number of the genes coding for TBDTs varies in different species, which might reflect environmental adaptations or evolutionary variations of the system. For example, in the cyanobacterium Anabaena sp. PCC 7120 the large number of 22 genes coding for TBDTs has been identified and the expression of these genes has been explored in the absence of iron or copper as well as under nitrogen starvation. We describe the analysis of the expression of the TBDT genes and the according cytoplasmic-membrane localized components; the latter appear to have a lower degree of complexity in Anabaena sp. PCC 7120. This analysis unravels that the response is not sole dependent on the metal supply, but also on cell culture densities. In addition, we present a large group of FhuA-like genes which is expressed highest under standard conditions suggesting a function distinct from iron or copper transport. The genes are clustered according to the expression profile and the consequences for our understanding of the transport systems in Anabaena sp. PCC 7120 are discussed.

Christina Lehmann

Buchmann Institute for Molecular Life Sciences and Institute of Biochemistry II,
School of Medicine,
Buchmann Institute for Molecular Life Sciences and Institute of Biochemistry II, School of Medicine

Goethe University

Tracking and Quantifying Developmental Processes in C. elegans Using Open-source Tools

Christina Lehmann

.css-o250i3{font-size:18px;font-family:Open Sans,sans-serif;line-height:21.6px;}Buchmann Institute for Molecular Life Sciences and Institute of Biochemistry II,School of Medicine,Buchmann Institute for Molecular Life Sciences and Institute of Biochemistry II, School of Medicine

Goethe University

Tracking and Quantifying Developmental Processes in C. elegans Using Open-source Tools

Buchmann Institute for Molecular Life Sciences and Institute of Biochemistry II,
School of Medicine,
Buchmann Institute for Molecular Life Sciences and Institute of Biochemistry II, School of Medicine