Department of Pathology
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Visualization of proteins in acrylamide gels using ultraviolet illumination.
Analytical biochemistry Feb, 2002 | Pubmed ID: 11811971
Comparative genomics of closely related salmonellae.
Trends in microbiology Feb, 2002 | Pubmed ID: 11827811
The light-induced reactions of tryptophan with halocompounds.
Photochemistry and photobiology Apr, 2002 | Pubmed ID: 12003125
Trp-999 of beta-galactosidase (Escherichia coli) is a key residue for binding, catalysis, and synthesis of allolactose, the natural lac operon inducer.
Biochemistry Feb, 2003 | Pubmed ID: 12578395
Visible fluorescent detection of proteins in polyacrylamide gels without staining.
Analytical biochemistry Mar, 2004 | Pubmed ID: 14769330
Robotic radical prostatectomy: a technique to reduce pT2 positive margins.
Urology Dec, 2004 | Pubmed ID: 15596205
Mosaic prophages with horizontally acquired genes account for the emergence and diversification of the globally disseminated M1T1 clone of Streptococcus pyogenes.
Journal of bacteriology May, 2005 | Pubmed ID: 15866915
In vitro characterization of the Bacillus subtilis protein tyrosine phosphatase YwqE.
Journal of bacteriology May, 2005 | Pubmed ID: 15866923
Impaired TGF-beta responses in peripheral T cells of G alpha i2-/- mice.
Journal of immunology (Baltimore, Md. : 1950) May, 2005 | Pubmed ID: 15879107
Viral metagenomics.
Nature reviews. Microbiology Jun, 2005 | Pubmed ID: 15886693
Low-molecular-weight protein tyrosine phosphatases of Bacillus subtilis.
Journal of bacteriology Jul, 2005 | Pubmed ID: 15995210
Differential roles for CXCR3 in CD4+ and CD8+ T cell trafficking following viral infection of the CNS.
European journal of immunology Mar, 2006 | Pubmed ID: 16479546
An application of statistics to comparative metagenomics.
BMC bioinformatics , 2006 | Pubmed ID: 16549025
Using pyrosequencing to shed light on deep mine microbial ecology.
BMC genomics , 2006 | Pubmed ID: 16549033
Identification of trichloroethanol visualized proteins from two-dimensional polyacrylamide gels by mass spectrometry.
Analytical chemistry Apr, 2006 | Pubmed ID: 16579625
Finding novel genes in bacterial communities isolated from the environment.
Bioinformatics (Oxford, England) Jul, 2006 | Pubmed ID: 16873483
The marine viromes of four oceanic regions.
PLoS biology Nov, 2006 | Pubmed ID: 17090214
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation.
Nucleic acids research Jan, 2007 | Pubmed ID: 17145713
Decreased MAPK- and PGE2-dependent IL-11 production in Gialpha2-/- colonic myofibroblasts.
American journal of physiology. Gastrointestinal and liver physiology Jun, 2007 | Pubmed ID: 17332478
Development of indole chemistry to label tryptophan residues in protein for determination of tryptophan surface accessibility.
Protein science : a publication of the Protein Society Jun, 2007 | Pubmed ID: 17525468
Expression of CXC chemokine ligand 10 from the mouse hepatitis virus genome results in protection from viral-induced neurological and liver disease.
Journal of immunology (Baltimore, Md. : 1950) Jul, 2007 | Pubmed ID: 17617609
Metagenomic and small-subunit rRNA analyses reveal the genetic diversity of bacteria, archaea, fungi, and viruses in soil.
Applied and environmental microbiology Nov, 2007 | Pubmed ID: 17827313
Evidence for differential roles for NKG2D receptor signaling in innate host defense against coronavirus-induced neurological and liver disease.
Journal of virology Mar, 2008 | Pubmed ID: 18094157
Bacterial carbon processing by generalist species in the coastal ocean.
Nature Feb, 2008 | Pubmed ID: 18223640
The RAST Server: rapid annotations using subsystems technology.
BMC genomics , 2008 | Pubmed ID: 18261238
Phylogenetic classification of short environmental DNA fragments.
Nucleic acids research Apr, 2008 | Pubmed ID: 18285365
Microbial ecology of four coral atolls in the Northern Line Islands.
PloS one , 2008 | Pubmed ID: 18301735
Biodiversity and biogeography of phages in modern stromatolites and thrombolites.
Nature Mar, 2008 | Pubmed ID: 18311127
Comparison of healing after cystotomy and repair with fibrin glue and sutured closure in the porcine model.
Journal of endourology / Endourological Society Jan, 2008 | Pubmed ID: 18315486
Functional metagenomic profiling of nine biomes.
Nature Apr, 2008 | Pubmed ID: 18337718
Role for epithelial dysregulation in early-onset colitis-associated colon cancer in Gi2-alpha-/- mice.
Inflammatory bowel diseases Jul, 2008 | Pubmed ID: 18340649
Viral communities associated with healthy and bleaching corals.
Environmental microbiology Sep, 2008 | Pubmed ID: 18479440
Viral diversity and dynamics in an infant gut.
Research in microbiology Jun, 2008 | Pubmed ID: 18541415
Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor.
Journal of biotechnology Aug, 2008 | Pubmed ID: 18611419
Bone marrow stem cells for urologic tissue engineering.
World journal of urology Aug, 2008 | Pubmed ID: 18654786
Comparative metagenomics reveals host specific metavirulomes and horizontal gene transfer elements in the chicken cecum microbiome.
PloS one , 2008 | Pubmed ID: 18698407
Comparative study of in vivo lymphatic sealing capability of the porcine thoracic duct using laparoscopic dissection devices.
The Journal of urology Jan, 2009 | Pubmed ID: 19010491
Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa.
Proceedings of the National Academy of Sciences of the United States of America Nov, 2008 | Pubmed ID: 19017800
The 'buoy' stent: evaluation of a prototype indwelling ureteric stent in a porcine model.
BJU international Jul, 2009 | Pubmed ID: 19154469
Evaluation of the outcomes of electrosurgical induced bowel injury treated with tissue glue/sealant versus sutured repair in a rabbit model.
Journal of endourology / Endourological Society Mar, 2009 | Pubmed ID: 19275489
Metagenomic analysis of stressed coral holobionts.
Environmental microbiology Aug, 2009 | Pubmed ID: 19397678
Epigenetic repression of DNA mismatch repair by inflammation and hypoxia in inflammatory bowel disease-associated colorectal cancer.
Cancer research Aug, 2009 | Pubmed ID: 19638594
Lysogeny and sporulation in Bacillus isolates from the Gulf of Mexico.
Applied and environmental microbiology Feb, 2010 | Pubmed ID: 20008174
The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes.
PLoS computational biology Dec, 2009 | Pubmed ID: 20011103
Bovine serum albumin glutaraldehyde for completely sutureless laparoscopic heminephrectomy in a survival porcine model.
Journal of endourology / Endourological Society Mar, 2010 | Pubmed ID: 20059350
NOTCH 信号是形成和自我更新的肿瘤启动所必需的细胞和分泌细胞分化的结肠癌的镇压。
Cancer research Feb, 2010 | Pubmed ID: 20145124
Transposases are the most abundant, most ubiquitous genes in nature.
Nucleic acids research Jul, 2010 | Pubmed ID: 20215432
Accessing the SEED genome databases via Web services API: tools for programmers.
BMC bioinformatics , 2010 | Pubmed ID: 20546611
Mutation of NIMA-related kinase 1 (NEK1) leads to chromosome instability.
Molecular cancer , 2011 | Pubmed ID: 21214959
Linking lipid metabolism to the innate immune response in macrophages through sterol regulatory element binding protein-1a.
Cell metabolism May, 2011 | Pubmed ID: 21531336
Cytokine-induced alterations of α7 nicotinic receptor in colonic CD4 T cells mediate dichotomous response to nicotine in murine models of Th1/Th17- versus Th2-mediated colitis.
Journal of immunology (Baltimore, Md. : 1950) Sep, 2011 | Pubmed ID: 21784975
Genome sequence of the human pathogen Vibrio cholerae Amazonia.
Journal of bacteriology Oct, 2011 | Pubmed ID: 21952545
Phage-bacteria relationships and CRISPR elements revealed by a metagenomic survey of the rumen microbiome.
Environmental microbiology Jan, 2012 | Pubmed ID: 22004549
PHACTS, a computational approach to classifying the lifestyle of phages.
Bioinformatics (Oxford, England) Jan, 2012 | Pubmed ID: 22238260
Characterization of the ELPhiS Prophage from Salmonella enterica serovar Enteritidis strain LK5.
Applied and environmental microbiology Jan, 2012 | Pubmed ID: 22247173
TNF-α Induces Up-Regulation of EGFR Expression and Signaling in Human Colonic Myofibroblasts.
American journal of physiology. Gastrointestinal and liver physiology Feb, 2012 | Pubmed ID: 22301110
PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity.
BMC bioinformatics , 2012 | Pubmed ID: 22385976
Zinc sequestration by the neutrophil protein calprotectin enhances Salmonella growth in the inflamed gut.
Cell host & microbe Mar, 2012 | Pubmed ID: 22423963
Draft genome sequence of the shrimp pathogen Vibrio harveyi CAIM 1792.
Journal of bacteriology Apr, 2012 | Pubmed ID: 22461546
Muscle sarcomas and alopecia in A/J mice chronically treated with nicotine.
Life sciences Nov, 2012 | Pubmed ID: 22521759
Genome sequence of the bacterioplanktonic, mixotrophic Vibrio campbellii strain PEL22A, isolated in the Abrolhos Bank.
Journal of bacteriology May, 2012 | Pubmed ID: 22535939
Genome sequences of the ethanol-tolerant Lactobacillus vini strains LMG 23202T and JP7.8.9.
Journal of bacteriology Jun, 2012 | Pubmed ID: 22582376
PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies.
Nucleic acids research Sep, 2012 | Pubmed ID: 22584627
miR-23a promotes the transition from indolent to invasive colorectal cancer.
Cancer discovery Jun, 2012 | Pubmed ID: 22628407
Genome-wide study of the defective sucrose fermenter strain of Vibrio cholerae from the Latin American cholera epidemic.
PloS one , 2012 | Pubmed ID: 22662140
Diversification of the Salmonella fimbriae: a model of macro- and microevolution.
PloS one , 2012 | Pubmed ID: 22701679
Taxonomic and functional microbial signatures of the endemic marine sponge Arenosclera brasiliensis.
PloS one , 2012 | Pubmed ID: 22768320
Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux.
PloS one , 2012 | Pubmed ID: 22848480
Microfluidic PCR combined with pyrosequencing for identification of allelic variants with phenotypic associations among targeted Salmonella genes.
Applied and environmental microbiology Oct, 2012 | Pubmed ID: 22885744
Metabolic trajectory of cellular differentiation in small intestine by Phasor Fluorescence Lifetime Microscopy of NADH.
Scientific reports , 2012 | Pubmed ID: 22891156
Real time metagenomics: using k-mers to annotate metagenomes.
Bioinformatics (Oxford, England) Dec, 2012 | Pubmed ID: 23047562
Reference-independent comparative metagenomics using cross-assembly: crAss.
Bioinformatics (Oxford, England) Dec, 2012 | Pubmed ID: 23074261
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models.
PloS one , 2012 | Pubmed ID: 23110173
Intracellular trafficking of the KV1.3 potassium channel is regulated by the prodomain of a matrix metalloprotease.
The Journal of biological chemistry Mar, 2013 | Pubmed ID: 23300077
Applying Shannon's information theory to bacterial and phage genomes and metagenomes.
Scientific reports , 2013 | Pubmed ID: 23301154
A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes.
BMC evolutionary biology , 2013 | Pubmed ID: 23391036
Structure and function of a cyanophage-encoded peptide deformylase.
The ISME journal Jun, 2013 | Pubmed ID: 23407310
Multivariate analysis of functional metagenomes.
Frontiers in genetics , 2013 | Pubmed ID: 23579547
Explaining microbial phenotypes on a genomic scale: GWAS for microbes.
Briefings in functional genomics Jul, 2013 | Pubmed ID: 23625995
Circadian clock regulates the host response to Salmonella.
Proceedings of the National Academy of Sciences of the United States of America Jun, 2013 | Pubmed ID: 23716692
Probiotic bacteria reduce salmonella typhimurium intestinal colonization by competing for iron.
Cell host & microbe Jul, 2013 | Pubmed ID: 23870311
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