Mechanical Engineering and Materials Science
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The force-driven conformations of heparin studied with single molecule force microscopy.
Biophysical journal Oct, 2003 | Pubmed ID: 14507732
Nanomechanical control of glucopyranose rotamers.
Journal of the American Chemical Society May, 2004 | Pubmed ID: 15149204
Elastic properties of single amylose chains in water: a quantum mechanical and AFM study.
Journal of the American Chemical Society Jul, 2004 | Pubmed ID: 15264836
Molecular dynamics simulations of forced conformational transitions in 1,6-linked polysaccharides.
Biophysical journal Sep, 2004 | Pubmed ID: 15345528
Direct detection of inter-residue hydrogen bonds in polysaccharides by single-molecule force spectroscopy.
Angewandte Chemie (International ed. in English) Apr, 2005 | Pubmed ID: 15786525
Nanospring behaviour of ankyrin repeats.
Nature Mar, 2006 | Pubmed ID: 16415852
Identification of sugar isomers by single-molecule force spectroscopy.
Journal of the American Chemical Society May, 2006 | Pubmed ID: 16637601
Simulating force-induced conformational transitions in polysaccharides with the SMD replica exchange method.
Biophysical journal Sep, 2006 | Pubmed ID: 16829559
Direct detection of the formation of V-amylose helix by single molecule force spectroscopy.
Journal of the American Chemical Society Jul, 2006 | Pubmed ID: 16848474
A stochastic, cantilever approach to the evaluation of solution phase thermodynamic quantities.
Proceedings of the National Academy of Sciences of the United States of America Feb, 2007 | Pubmed ID: 17307881
Pulling geometry-induced errors in single molecule force spectroscopy measurements.
Biophysical journal May, 2007 | Pubmed ID: 17324999
Nanomechanical fingerprints of UV damage to DNA.
Small (Weinheim an der Bergstrasse, Germany) May, 2007 | Pubmed ID: 17393552
Detecting ultraviolet damage in single DNA molecules by atomic force microscopy.
Biophysical journal Sep, 2007 | Pubmed ID: 17483180
Direct measurements of base stacking interactions in DNA by single-molecule atomic-force spectroscopy.
Physical review letters Jul, 2007 | Pubmed ID: 17678193
Nanoscale detection of ionizing radiation damage to DNA by atomic force microscopy.
Small (Weinheim an der Bergstrasse, Germany) Feb, 2008 | Pubmed ID: 18247386
Minimizing pulling geometry errors in atomic force microscope single molecule force spectroscopy.
Biophysical journal Oct, 2008 | Pubmed ID: 18641069
UVA generates pyrimidine dimers in DNA directly.
Biophysical journal Feb, 2009 | Pubmed ID: 19186150
Detecting solvent-driven transitions of poly(A) to double-stranded conformations by atomic force microscopy.
Biophysical journal Apr, 2009 | Pubmed ID: 19348773
Nanomechanical fingerprints of gamma radiation damage to DNA.
Journal of nanoscience and nanotechnology Dec, 2009 | Pubmed ID: 19908788
Equilibrium sampling for biomolecules under mechanical tension.
Biophysical journal Feb, 2010 | Pubmed ID: 20159170
Mechanical unfolding of an ankyrin repeat protein.
Biophysical journal Apr, 2010 | Pubmed ID: 20371329
Fast and forceful refolding of stretched alpha-helical solenoid proteins.
Biophysical journal Jun, 2010 | Pubmed ID: 20550922
Separating DNA with different topologies by atomic force microscopy in comparison with gel electrophoresis.
The journal of physical chemistry. B Sep, 2010 | Pubmed ID: 20799746
Full reconstruction of a vectorial protein folding pathway by atomic force microscopy and molecular dynamics simulations.
The Journal of biological chemistry Dec, 2010 | Pubmed ID: 20870713
Inhibitor binding increases the mechanical stability of staphylococcal nuclease.
Biophysical journal Feb, 2011 | Pubmed ID: 21320455
Construction of a single-axis molecular puller for measuring polysaccharide and protein mechanics by atomic force microscopy.
CSH protocols Dec, 2007 | Pubmed ID: 21357001
Measuring polysaccharide mechanics by atomic force microscopy.
CSH protocols Dec, 2007 | Pubmed ID: 21357002
Measuring protein mechanics by atomic force microscopy.
CSH protocols Dec, 2007 | Pubmed ID: 21357003
Atomic force microscopy captures MutS tetramers initiating DNA mismatch repair.
The EMBO journal Jun, 2011 | Pubmed ID: 21666597
Nanomechanics of streptavidin hubs for molecular materials.
Advanced materials (Deerfield Beach, Fla.) Dec, 2011 | Pubmed ID: 22102445
A nanoscale force probe for gauging intermolecular interactions.
Angewandte Chemie (International ed. in English) Feb, 2012 | Pubmed ID: 22253141
Stretching single polysaccharides and proteins using atomic force microscopy.
Chemical Society reviews May, 2012 | Pubmed ID: 22331199
Mechanical anisotropy of ankyrin repeats.
Biophysical journal Mar, 2012 | Pubmed ID: 22404934
Mutation of conserved histidines alters tertiary structure and nanomechanics of consensus ankyrin repeats.
The Journal of biological chemistry Jun, 2012 | Pubmed ID: 22514283
Atomic force microscopy captures folded ribosome bound nascent chains.
Chemical communications (Cambridge, England) Dec, 2012 | Pubmed ID: 23051696
Effects of ligand binding on the mechanical properties of ankyrin repeat protein gankyrin.
PLoS computational biology , 2013 | Pubmed ID: 23341763
Improving single molecule force spectroscopy through automated real-time data collection and quantification of experimental conditions.
Ultramicroscopy Jan, 2014 | Pubmed ID: 24001740
Origin of overstretching transitions in single-stranded nucleic acids.
Physical review letters Nov, 2013 | Pubmed ID: 24237568
Single molecule mechanical manipulation for studying biological properties of proteins, DNA, and sugars.
Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology May-Jun, 2014 | Pubmed ID: 24347439
Unraveling the mysteries of chaperone interactions of the myosin head.
Biophysical journal Aug, 2014 | Pubmed ID: 25099791
Chaperones rescue luciferase folding by separating its domains.
The Journal of biological chemistry Oct, 2014 | Pubmed ID: 25160632
Capturing the mechanical unfolding pathway of a large protein with coiled-coil probes.
Angewandte Chemie (International ed. in English) Dec, 2014 | Pubmed ID: 25339429
Direct observation of multimer stabilization in the mechanical unfolding pathway of a protein undergoing oligomerization.
ACS nano Feb, 2015 | Pubmed ID: 25639698
Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage.
Nucleic acids research Oct, 2015 | Pubmed ID: 26384421
Atomic force microscopy captures the initiation of methyl-directed DNA mismatch repair.
DNA repair Nov, 2015 | Pubmed ID: 26466357
Structure and specificity of the RNA-guided endonuclease Cas9 during DNA interrogation, target binding and cleavage.
Nucleic acids research Mar, 2016 | Pubmed ID: 26578578
Modular, Nondegenerate Polyprotein Scaffolds for Atomic Force Spectroscopy.
Biomacromolecules 07, 2016 | Pubmed ID: 27276010
Single-molecule Force Spectroscopy Reveals the Calcium Dependence of the Alternative Conformations in the Native State of a βγ-Crystallin Protein.
The Journal of biological chemistry 08, 2016 | Pubmed ID: 27378818
Can Dissipative Properties of Single Molecules Be Extracted from a Force Spectroscopy Experiment?
Biophysical journal Sep, 2016 | Pubmed ID: 27653475
A 'Semi-Protected Oligonucleotide Recombination' Assay for DNA Mismatch Repair in vivo Suggests Different Modes of Repair for Lagging Strand Mismatches.
Nucleic acids research May, 2017 | Pubmed ID: 28053122
Competing Pathways and Multiple Folding Nuclei in a Large Multidomain Protein, Luciferase.
Biophysical journal May, 2017 | Pubmed ID: 28494954
Warhammers for Peaceful Times.
Biophysical journal 01, 2018 | Pubmed ID: 29320677
Relevance of the Speed and Direction of Pulling in Simple Modular Proteins.
Journal of chemical theory and computation Jun, 2018 | Pubmed ID: 29771510
Endonuclease-independent DNA mismatch repair processes on the lagging strand.
DNA repair 08, 2018 | Pubmed ID: 29929046
AFM-Based Single-Molecule Force Spectroscopy of Proteins.
Methods in molecular biology (Clifton, N.J.) , 2018 | Pubmed ID: 29956225
Unraveling the Mechanical Unfolding Pathways of a Multidomain Protein: Phosphoglycerate Kinase.
Biophysical journal Jul, 2018 | Pubmed ID: 29972811
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