Computational and Systems Biology,
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The anti-toxin ParD of plasmid RK2 consists of two structurally distinct moieties and belongs to the ribbon-helix-helix family of DNA-binding proteins.
The Biochemical journal Jan, 2002 | Pubmed ID: 11743881
Mutants of the major ryegrass pollen allergen, Lol p 5, with reduced IgE-binding capacity: candidates for grass pollen-specific immunotherapy.
European journal of immunology Jan, 2002 | Pubmed ID: 11782018
Functional analysis of yeast snoRNA and snRNA 3'-end formation mediated by uncoupling of cleavage and polyadenylation.
Molecular and cellular biology Mar, 2002 | Pubmed ID: 11839805
Recombinant carp parvalbumin, the major cross-reactive fish allergen: a tool for diagnosis and therapy of fish allergy.
Journal of immunology (Baltimore, Md. : 1950) May, 2002 | Pubmed ID: 11971005
tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli.
The EMBO journal Jul, 2002 | Pubmed ID: 12110595
Yhh1p/Cft1p directly links poly(A) site recognition and RNA polymerase II transcription termination.
The EMBO journal Aug, 2002 | Pubmed ID: 12145212
Combination vaccines for the treatment of grass pollen allergy consisting of genetically engineered hybrid molecules with increased immunogenicity.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology Aug, 2002 | Pubmed ID: 12154002
Gene regulation: reviving the message.
Nature Sep, 2002 | Pubmed ID: 12239557
The cross-reactive calcium-binding pollen allergen, Phl p 7, reveals a novel dimer assembly.
The EMBO journal Oct, 2002 | Pubmed ID: 12356717
Characterization of a novel isoform of alpha-nascent polypeptide-associated complex as IgE-defined autoantigen.
The Journal of investigative dermatology Oct, 2002 | Pubmed ID: 12406326
A role for SSU72 in balancing RNA polymerase II transcription elongation and termination.
Molecular cell Nov, 2002 | Pubmed ID: 12453421
RNA editing by adenosine deaminases generates RNA and protein diversity.
Biochimie Aug, 2002 | Pubmed ID: 12457566
Three-dimensional structure of the panallergen Phl p 7.
International archives of allergy and immunology Jan, 2003 | Pubmed ID: 12576729
X-filtering for a range of coupling constants: application to the detection of intermolecular NOEs.
Journal of magnetic resonance (San Diego, Calif. : 1997) Feb, 2003 | Pubmed ID: 12615149
Molecular characterization of recombinant T1, a non-allergenic periwinkle (Catharanthus roseus) protein, with sequence similarity to the Bet v 1 plant allergen family.
The Biochemical journal Jul, 2003 | Pubmed ID: 12656672
Independent functions of yeast Pcf11p in pre-mRNA 3' end processing and in transcription termination.
The EMBO journal May, 2003 | Pubmed ID: 12727883
Formation of disulfide bonds and homodimers of the major cat allergen Fel d 1 equivalent to the natural allergen by expression in Escherichia coli.
The Journal of biological chemistry Oct, 2003 | Pubmed ID: 12732623
The role of the yeast cleavage and polyadenylation factor subunit Ydh1p/Cft2p in pre-mRNA 3'-end formation.
Nucleic acids research Jul, 2003 | Pubmed ID: 12853609
Crystallization and preliminary structure determination of the C-terminal truncated domain of the S-layer protein SbsC.
Acta crystallographica. Section D, Biological crystallography Aug, 2003 | Pubmed ID: 12876353
Human Fip1 is a subunit of CPSF that binds to U-rich RNA elements and stimulates poly(A) polymerase.
The EMBO journal Feb, 2004 | Pubmed ID: 14749727
Circular dichroism analysis of allergens.
Methods (San Diego, Calif.) Mar, 2004 | Pubmed ID: 14962758
Ribavirin/interferon-alpha sequential treatment of recurrent hepatitis C after liver transplantation.
Transplant international : official journal of the European Society for Organ Transplantation May, 2004 | Pubmed ID: 15060764
Generation of an allergy vaccine by disruption of the three-dimensional structure of the cross-reactive calcium-binding allergen, Phl p 7.
Journal of immunology (Baltimore, Md. : 1950) May, 2004 | Pubmed ID: 15100313
Molecular characterization of polygalacturonases as grass pollen-specific marker allergens: expulsion from pollen via submicronic respirable particles.
Journal of immunology (Baltimore, Md. : 1950) May, 2004 | Pubmed ID: 15128842
Sequence motifs that distinguish ATP(CTP):tRNA nucleotidyl transferases from eubacterial poly(A) polymerases.
RNA (New York, N.Y.) Jun, 2004 | Pubmed ID: 15146073
Functions for S. cerevisiae Swd2p in 3' end formation of specific mRNAs and snoRNAs and global histone 3 lysine 4 methylation.
RNA (New York, N.Y.) Jun, 2004 | Pubmed ID: 15146080
Distinct sequence motifs within the 68-kDa subunit of cleavage factor Im mediate RNA binding, protein-protein interactions, and subcellular localization.
The Journal of biological chemistry Aug, 2004 | Pubmed ID: 15169763
Biochemical and structural insights into substrate binding and catalytic mechanism of mammalian poly(A) polymerase.
Journal of molecular biology Aug, 2004 | Pubmed ID: 15328606
TraA and its N-terminal relaxase domain of the Gram-positive plasmid pIP501 show specific oriT binding and behave as dimers in solution.
The Biochemical journal Apr, 2005 | Pubmed ID: 15554903
A new yeast poly(A) polymerase complex involved in RNA quality control.
PLoS biology Jun, 2005 | Pubmed ID: 15828860
A hybrid molecule resembling the epitope spectrum of grass pollen for allergy vaccination.
The Journal of allergy and clinical immunology May, 2005 | Pubmed ID: 15867859
WW domains provide a platform for the assembly of multiprotein networks.
Molecular and cellular biology Aug, 2005 | Pubmed ID: 16055720
Dimerization of the major birch pollen allergen Bet v 1 is important for its in vivo IgE-cross-linking potential in mice.
Journal of immunology (Baltimore, Md. : 1950) Nov, 2005 | Pubmed ID: 16272319
Bacterial fermentation of recombinant major wasp allergen Antigen 5 using oxygen limiting growth conditions improves yield and quality of inclusion bodies.
Protein expression and purification Jun, 2006 | Pubmed ID: 16495080
Crystallization and preliminary structure determination of the plant food allergen Pru av 2.
Acta crystallographica. Section F, Structural biology and crystallization communications Feb, 2005 | Pubmed ID: 16510989
The TraA relaxase autoregulates the putative type IV secretion-like system encoded by the broad-host-range Streptococcus agalactiae plasmid pIP501.
Microbiology (Reading, England) Mar, 2006 | Pubmed ID: 16514144
Cooking birch pollen-related food: divergent consequences for IgE- and T cell-mediated reactivity in vitro and in vivo.
The Journal of allergy and clinical immunology Jul, 2006 | Pubmed ID: 16815162
Direct interactions between subunits of CPSF and the U2 snRNP contribute to the coupling of pre-mRNA 3' end processing and splicing.
Molecular cell Jul, 2006 | Pubmed ID: 16857586
Structural basis for nucleic acid and toxin recognition of the bacterial antitoxin CcdA.
Journal of molecular biology Nov, 2006 | Pubmed ID: 17007877
An interaction between U2AF 65 and CF I(m) links the splicing and 3' end processing machineries.
The EMBO journal Oct, 2006 | Pubmed ID: 17024186
Bacterially expressed and optimized recombinant Phl p 1 is immunobiochemically equivalent to natural Phl p 1.
Biochimica et biophysica acta Nov, 2006 | Pubmed ID: 17085087
Splicing factors stimulate polyadenylation via USEs at non-canonical 3' end formation signals.
The EMBO journal Jun, 2007 | Pubmed ID: 17464285
A recombinant hypoallergenic parvalbumin mutant for immunotherapy of IgE-mediated fish allergy.
Journal of immunology (Baltimore, Md. : 1950) May, 2007 | Pubmed ID: 17475857
Clinical clarifications requested.
Advances in skin & wound care Jun, 2007 | Pubmed ID: 17538250
Genetic engineering of the major timothy grass pollen allergen, Phl p 6, to reduce allergenic activity and preserve immunogenicity.
Journal of immunology (Baltimore, Md. : 1950) Aug, 2007 | Pubmed ID: 17641039
The solution structure of ParD, the antidote of the ParDE toxin antitoxin module, provides the structural basis for DNA and toxin binding.
Protein science : a publication of the Protein Society Aug, 2007 | Pubmed ID: 17656583
RNA-specific ribonucleotidyl transferases.
RNA (New York, N.Y.) Nov, 2007 | Pubmed ID: 17872511
Mimotopes identify conformational B-cell epitopes on the two major house dust mite allergens Der p 1 and Der p 2.
Molecular immunology Mar, 2008 | Pubmed ID: 17964653
A hypoallergenic vaccine obtained by tail-to-head restructuring of timothy grass pollen profilin, Phl p 12, for the treatment of cross-sensitization to profilin.
Journal of immunology (Baltimore, Md. : 1950) Dec, 2007 | Pubmed ID: 18025208
Determinants of substrate specificity in RNA-dependent nucleotidyl transferases.
Biochimica et biophysica acta Apr, 2008 | Pubmed ID: 18177750
Three-dimensional structure of the cross-reactive pollen allergen Che a 3: visualizing cross-reactivity on the molecular surfaces of weed, grass, and tree pollen allergens.
Journal of immunology (Baltimore, Md. : 1950) Feb, 2008 | Pubmed ID: 18250440
Reduction of the in vivo allergenicity of Der p 2, the major house-dust mite allergen, by genetic engineering.
Molecular immunology May, 2008 | Pubmed ID: 18295887
Crystal structure of the 25 kDa subunit of human cleavage factor Im.
Nucleic acids research Jun, 2008 | Pubmed ID: 18445629
Characterization of folded recombinant Der p 5, a potential diagnostic marker allergen for house dust mite allergy.
International archives of allergy and immunology , 2008 | Pubmed ID: 18520154
The structure and binding behavior of the bacterial cell surface layer protein SbsC.
Structure (London, England : 1993) Aug, 2008 | Pubmed ID: 18682224
Disruption of allergenic activity of the major grass pollen allergen Phl p 2 by reassembly as a mosaic protein.
Journal of immunology (Baltimore, Md. : 1950) Oct, 2008 | Pubmed ID: 18802090
The role of the putative 3' end processing endonuclease Ysh1p in mRNA and snoRNA synthesis.
RNA (New York, N.Y.) Dec, 2008 | Pubmed ID: 18971324
Cloning, expression, and mapping of allergenic determinants of alphaS1-casein, a major cow's milk allergen.
Journal of immunology (Baltimore, Md. : 1950) Jun, 2009 | Pubmed ID: 19454699
The high-molecular-mass amylase (HMMA) of Geobacillus stearothermophilus ATCC 12980 interacts with the cell wall components by virtue of three specific binding regions.
Molecular microbiology Jun, 2009 | Pubmed ID: 19460092
Distinct roles of non-canonical poly(A) polymerases in RNA metabolism.
PLoS genetics Jul, 2009 | Pubmed ID: 19593367
Towards the structure of the C-terminal part of the S-layer protein SbsC.
Acta crystallographica. Section F, Structural biology and crystallization communications Oct, 2009 | Pubmed ID: 19851018
Biochemical characterization of three putative ATPases from a new type IV secretion system of Aeromonas veronii plasmid pAC3249A.
BMC biochemistry Feb, 2010 | Pubmed ID: 20144229
Visualization of clustered IgE epitopes on alpha-lactalbumin.
The Journal of allergy and clinical immunology Jun, 2010 | Pubmed ID: 20466413
Arginine methylation in subunits of mammalian pre-mRNA cleavage factor I.
RNA (New York, N.Y.) Aug, 2010 | Pubmed ID: 20562214
Hypoallergenic derivatives of the major birch pollen allergen Bet v 1 obtained by rational sequence reassembly.
The Journal of allergy and clinical immunology Nov, 2010 | Pubmed ID: 20638112
Biophysical characterization of recombinant HIV-1 subtype C virus infectivity factor.
Amino acids Mar, 2011 | Pubmed ID: 20809132
Ground vegetation monitoring in Swiss forests: comparison of survey methods and implications for trend assessments.
Environmental monitoring and assessment Mar, 2011 | Pubmed ID: 21049285
Altered IgE epitope presentation: A model for hypoallergenic activity revealed for Bet v 1 trimer.
Molecular immunology Jan, 2011 | Pubmed ID: 21093057
Antiparasitic compounds from Cupania cinerea with activities against Plasmodium falciparum and Trypanosoma brucei rhodesiense.
Journal of natural products Apr, 2011 | Pubmed ID: 21438586
PAPD5, a noncanonical poly(A) polymerase with an unusual RNA-binding motif.
RNA (New York, N.Y.) Sep, 2011 | Pubmed ID: 21788334
Prediction of IgE-binding epitopes by means of allergen surface comparison and correlation to cross-reactivity.
The Journal of allergy and clinical immunology Oct, 2011 | Pubmed ID: 21872913
The structure of bacterial S-layer proteins.
Progress in molecular biology and translational science , 2011 | Pubmed ID: 21999995
Misdirected antibody responses against an N-terminal epitope on human rhinovirus VP1 as explanation for recurrent RV infections.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology Mar, 2012 | Pubmed ID: 22121050
Effect of protamine on the solubility and deamidation of human growth hormone.
International journal of pharmaceutics May, 2012 | Pubmed ID: 22342332
Hypoallergenic mutants of the Timothy grass pollen allergen Phl p 5 generated by proline mutations.
International archives of allergy and immunology , 2012 | Pubmed ID: 22653364
Genome-wide analysis of pre-mRNA 3' end processing reveals a decisive role of human cleavage factor I in the regulation of 3' UTR length.
Cell reports Jun, 2012 | Pubmed ID: 22813749
S-adenosyl-L-homocysteine hydrolase and methylation disorders: yeast as a model system.
Biochimica et biophysica acta Jan, 2013 | Pubmed ID: 23017368
Crystallization and first data collection of the putative transfer protein TraN from the Gram-positive conjugative plasmid pIP501.
Acta crystallographica. Section F, Structural biology and crystallization communications Nov, 2012 | Pubmed ID: 23143259
Cleavage factor Im is a key regulator of 3' UTR length.
RNA biology Dec, 2012 | Pubmed ID: 23187700
The 2.5 Å structure of the enterococcus conjugation protein TraM resembles VirB8 type IV secretion proteins.
The Journal of biological chemistry Jan, 2013 | Pubmed ID: 23188825
Crystallization of domains involved in self-assembly of the S-layer protein SbsC.
Acta crystallographica. Section F, Structural biology and crystallization communications Dec, 2012 | Pubmed ID: 23192035
Different modes of IgE binding to CD23 revealed with major birch allergen, Bet v 1-specific monoclonal IgE.
Immunology and cell biology Feb, 2013 | Pubmed ID: 23229638
Crystallization and preliminary structure determination of the transfer protein TraM from the Gram-positive conjugative plasmid pIP501.
Acta crystallographica. Section F, Structural biology and crystallization communications Feb, 2013 | Pubmed ID: 23385763
A nonallergenic birch pollen allergy vaccine consisting of hepatitis PreS-fused Bet v 1 peptides focuses blocking IgG toward IgE epitopes and shifts immune responses to a tolerogenic and Th1 phenotype.
Journal of immunology (Baltimore, Md. : 1950) Apr, 2013 | Pubmed ID: 23440415
Identification of Der p 23, a peritrophin-like protein, as a new major Dermatophagoides pteronyssinus allergen associated with the peritrophic matrix of mite fecal pellets.
Journal of immunology (Baltimore, Md. : 1950) Apr, 2013 | Pubmed ID: 23460742
Crystal structure and immunologic characterization of the major grass pollen allergen Phl p 4.
The Journal of allergy and clinical immunology Sep, 2013 | Pubmed ID: 23683465
Backbone resonance assignment of Alt a 1, a unique β-barrel protein and the major allergen of Alternaria alternata.
Biomolecular NMR assignments Oct, 2014 | Pubmed ID: 23715812
Characterization of mutants of a highly cross-reactive calcium-binding protein from Brassica pollen for allergen-specific immunotherapy.
Immunobiology Sep, 2013 | Pubmed ID: 23790497
Structure of allergens and structure based epitope predictions.
Methods (San Diego, Calif.) Mar, 2014 | Pubmed ID: 23891546
TraG encoded by the pIP501 type IV secretion system is a two-domain peptidoglycan-degrading enzyme essential for conjugative transfer.
Journal of bacteriology Oct, 2013 | Pubmed ID: 23913323
Crystal structure of human poly(A) polymerase gamma reveals a conserved catalytic core for canonical poly(A) polymerases.
Journal of molecular biology Jan, 2014 | Pubmed ID: 24076191
Conjugative type IV secretion systems in Gram-positive bacteria.
Plasmid Nov, 2013 | Pubmed ID: 24129002
Dissection of the IgE and T-cell recognition of the major group 5 grass pollen allergen Phl p 5.
The Journal of allergy and clinical immunology Mar, 2014 | Pubmed ID: 24182774
Means to an end: mechanisms of alternative polyadenylation of messenger RNA precursors.
Wiley interdisciplinary reviews. RNA Mar-Apr, 2014 | Pubmed ID: 24243805
The type IV secretion protein TraK from the Enterococcus conjugative plasmid pIP501 exhibits a novel fold.
Acta crystallographica. Section D, Biological crystallography Apr, 2014 | Pubmed ID: 24699656
Structure of the double-stranded DNA-binding type IV secretion protein TraN from Enterococcus.
Acta crystallographica. Section D, Biological crystallography Sep, 2014 | Pubmed ID: 25195751
Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33.
Genes & development Nov, 2014 | Pubmed ID: 25301781
Biochemical, biophysical and IgE-epitope characterization of the wheat food allergen, Tri a 37.
PloS one , 2014 | Pubmed ID: 25368998
Global 3' UTR shortening has a limited effect on protein abundance in proliferating T cells.
Nature communications , 2014 | Pubmed ID: 25413384
Comparison of the specificities of IgG, IgG-subclass, IgA and IgM reactivities in African and European HIV-infected individuals with an HIV-1 clade C proteome-based array.
PloS one , 2015 | Pubmed ID: 25658330
Reflections on the RNA world.
RNA (New York, N.Y.) Apr, 2015 | Pubmed ID: 25780126
Conjugation in Gram-Positive Bacteria.
Microbiology spectrum Aug, 2014 | Pubmed ID: 26104193
Cor a 14, the allergenic 2S albumin from hazelnut, is highly thermostable and resistant to gastrointestinal digestion.
Molecular nutrition & food research Oct, 2015 | Pubmed ID: 26178695
Tracking morphologies at the nanoscale: self-assembly of an amphiphilic designer peptide into a double helix superstructure.
Nano research Jun, 2015 | Pubmed ID: 26290684
1H, 15N and 13C chemical shift assignment of the Gram-positive conjugative transfer protein TraHpIP501.
Biomolecular NMR assignments Apr, 2016 | Pubmed ID: 26559076
IgE epitope proximity determines immune complex shape and effector cell activation capacity.
The Journal of allergy and clinical immunology May, 2016 | Pubmed ID: 26684291
VirB8-like protein TraH is crucial for DNA transfer in Enterococcus faecalis.
Scientific reports 04, 2016 | Pubmed ID: 27103580
Critical and direct involvement of the CD23 stalk region in IgE binding.
The Journal of allergy and clinical immunology Jan, 2017 | Pubmed ID: 27343203
A comprehensive analysis of 3' end sequencing data sets reveals novel polyadenylation signals and the repressive role of heterogeneous ribonucleoprotein C on cleavage and polyadenylation.
Genome research 08, 2016 | Pubmed ID: 27382025
Mitochondrial lipids in neurodegeneration.
Cell and tissue research Jan, 2017 | Pubmed ID: 27449929
Molecular, Structural and Immunological Characterization of Der p 18, a Chitinase-Like House Dust Mite Allergen.
PloS one , 2016 | Pubmed ID: 27548813
Conjugative type IV secretion in Gram-positive pathogens: TraG, a lytic transglycosylase and endopeptidase, interacts with translocation channel protein TraM.
Plasmid May, 2017 | Pubmed ID: 28219792
The Coordinated Action of Calcineurin and Cathepsin D Protects Against α-Synuclein Toxicity.
Frontiers in molecular neuroscience , 2017 | Pubmed ID: 28713240
Targeting Type IV Secretion System Proteins to Combat Multidrug-Resistant Gram-positive Pathogens.
The Journal of infectious diseases Jun, 2017 | Pubmed ID: 28863473
Clustering of conformational IgE epitopes on the major dog allergen Can f 1.
Scientific reports Sep, 2017 | Pubmed ID: 28939849
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