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Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22.
Genome research Feb, 2002 | Pubmed ID: 11827946
Structural genomics: a new era for pharmaceutical research.
Genome biology , 2002 | Pubmed ID: 11864367
GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis.
Proceedings of the National Academy of Sciences of the United States of America Mar, 2002 | Pubmed ID: 11867748
Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes.
Nucleic acids research Jun, 2002 | Pubmed ID: 12034841
Protein-DNA interactions: amino acid conservation and the effects of mutations on binding specificity.
Journal of molecular biology Jul, 2002 | Pubmed ID: 12126620
The dominance of the population by a selected few: power-law behaviour applies to a wide variety of genomic properties.
Genome biology Jul, 2002 | Pubmed ID: 12186647
Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae.
Genes & development Dec, 2002 | Pubmed ID: 12464632
The transcriptional activity of human Chromosome 22.
Genes & development Feb, 2003 | Pubmed ID: 12600945
ExpressYourself: A modular platform for processing and visualizing microarray data.
Nucleic acids research Jul, 2003 | Pubmed ID: 12824348
Genomic analysis of gene expression relationships in transcriptional regulatory networks.
Trends in genetics : TIG Aug, 2003 | Pubmed ID: 12902159
Distribution of NF-kappaB-binding sites across human chromosome 22.
Proceedings of the National Academy of Sciences of the United States of America Oct, 2003 | Pubmed ID: 14527995
Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data.
Bioinformatics (Oxford, England) Oct, 2003 | Pubmed ID: 14555624
CREB binds to multiple loci on human chromosome 22.
Molecular and cellular biology May, 2004 | Pubmed ID: 15082775
Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs.
Genome research Jun, 2004 | Pubmed ID: 15173116
Structure and evolution of transcriptional regulatory networks.
Current opinion in structural biology Jun, 2004 | Pubmed ID: 15193307
Genomic analysis of regulatory network dynamics reveals large topological changes.
Nature Sep, 2004 | Pubmed ID: 15372033
GenCompass: a universal system for analysing gene expression for any genome.
Trends in biotechnology Nov, 2004 | Pubmed ID: 15491796
Transcriptional networking.
Genome biology , 2005 | Pubmed ID: 16168097
Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast.
Journal of molecular biology Jun, 2006 | Pubmed ID: 16762362
Extrapolating traditional DNA microarray statistics to tiling and protein microarray technologies.
Methods in enzymology , 2006 | Pubmed ID: 16939796
Transcriptional regulatory networks in bacteria: from input signals to output responses.
Current opinion in microbiology Oct, 2006 | Pubmed ID: 16942903
Transcriptomics and adaptive genomics of the asymptomatic bacteriuria Escherichia coli strain 83972.
Molecular genetics and genomics : MGG May, 2008 | Pubmed ID: 18317809
Complete genome sequence of uropathogenic Proteus mirabilis, a master of both adherence and motility.
Journal of bacteriology Jun, 2008 | Pubmed ID: 18375554
Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila.
Cell May, 2008 | Pubmed ID: 18510926
Principles of transcriptional regulation and evolution of the metabolic system in E. coli.
Genome research Jan, 2009 | Pubmed ID: 18836036
A census of human transcription factors: function, expression and evolution.
Nature reviews. Genetics Apr, 2009 | Pubmed ID: 19274049
Know your limits: assumptions, constraints and interpretation in systems biology.
Biochimica et biophysica acta Sep, 2009 | Pubmed ID: 19439202
Nuclear pore proteins nup153 and megator define transcriptionally active regions in the Drosophila genome.
PLoS genetics Feb, 2010 | Pubmed ID: 20174442
多路复用大规模并行技术表征人类转录因子具有约束力的具体情况。
Genome research Jun, 2010 | Pubmed ID: 20378718
Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets.
Nucleic acids research Aug, 2010 | Pubmed ID: 20385592
Comparative genomics of cyclic-di-GMP signalling in bacteria: post-translational regulation and catalytic activity.
Nucleic acids research Oct, 2010 | Pubmed ID: 20483912
iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution.
Nature structural & molecular biology Jul, 2010 | Pubmed ID: 20601959
The nonspecific lethal complex is a transcriptional regulator in Drosophila.
Molecular cell Jun, 2010 | Pubmed ID: 20620954
iCLIP predicts the dual splicing effects of TIA-RNA interactions.
PLoS biology , 2010 | Pubmed ID: 21048981
Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli.
Nucleic acids research Mar, 2011 | Pubmed ID: 21097887
Sensitized phenotypic screening identifies gene dosage sensitive region on chromosome 11 that predisposes to disease in mice.
EMBO molecular medicine Jan, 2011 | Pubmed ID: 21204268
An overview of prokaryotic transcription factors : a summary of function and occurrence in bacterial genomes.
Sub-cellular biochemistry , 2011 | Pubmed ID: 21557077
Large-scale nuclear architecture and transcriptional control.
Sub-cellular biochemistry , 2011 | Pubmed ID: 21557088
The RNA-binding protein Rrm4 is essential for efficient secretion of endochitinase Cts1.
Molecular & cellular proteomics : MCP Dec, 2011 | Pubmed ID: 21808052
Comparative genomics suggests differential deployment of linear and branched signaling across bacteria.
Molecular bioSystems Nov, 2011 | Pubmed ID: 21879110
A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast.
Genome research Jan, 2012 | Pubmed ID: 21930892
How do you find transcription factors? Computational approaches to compile and annotate repertoires of regulators for any genome.
Methods in molecular biology (Clifton, N.J.) , 2012 | Pubmed ID: 21938617
SpeCond: a method to detect condition-specific gene expression.
Genome biology Oct, 2011 | Pubmed ID: 22008066
Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12.
Nucleic acids research Dec, 2011 | Pubmed ID: 22180530
SpeCond: a method to detect condition-specific gene expression.
Genome biology Dec, 2011 | Pubmed ID: 22212554
Protein-RNA interactions: new genomic technologies and perspectives.
Nature reviews. Genetics Feb, 2011 | Pubmed ID: 22251872
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