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Building ribosomes: even more expensive than expected?
Current biology : CB Jun, 2007 | Pubmed ID: 17550767
Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs.
Proceedings of the National Academy of Sciences of the United States of America Jun, 2009 | Pubmed ID: 19482942
Prp43 bound at different sites on the pre-rRNA performs distinct functions in ribosome synthesis.
Molecular cell Nov, 2009 | Pubmed ID: 19941819
Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA-protein cross-linking.
The EMBO journal Jun, 2010 | Pubmed ID: 20453830
The nuclear RNA polymerase II surveillance system targets polymerase III transcripts.
The EMBO journal May, 2011 | Pubmed ID: 21460797
Box C/D snoRNP catalysed methylation is aided by additional pre-rRNA base-pairing.
The EMBO journal May, 2011 | Pubmed ID: 21556049
Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast.
Proceedings of the National Academy of Sciences of the United States of America Jun, 2011 | Pubmed ID: 21610164
A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease.
The EMBO journal Aug, 2011 | Pubmed ID: 21811236
Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits.
Nature structural & molecular biology Aug, 2012 | Pubmed ID: 22751017
Structure of the pre-60S ribosomal subunit with nuclear export factor Arx1 bound at the exit tunnel.
Nature structural & molecular biology Dec, 2012 | Pubmed ID: 23142978
Multiple RNA interactions position Mrd1 at the site of the small subunit pseudoknot within the 90S pre-ribosome.
Nucleic acids research Jan, 2013 | Pubmed ID: 23193268
Spliceosome-mediated decay (SMD) regulates expression of nonintronic genes in budding yeast.
Genes & development Sep, 2013 | Pubmed ID: 24065768
Rrp5 binding at multiple sites coordinates pre-rRNA processing and assembly.
Molecular cell Dec, 2013 | Pubmed ID: 24239293
Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export.
Nature Jan, 2014 | Pubmed ID: 24240281
PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast.
Genome biology Jan, 2014 | Pubmed ID: 24393166
Identification of bacteriophage-encoded anti-sRNAs in pathogenic Escherichia coli.
Molecular cell Jul, 2014 | Pubmed ID: 24910100
Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution.
Nucleic acids research Oct, 2014 | Pubmed ID: 25200078
Rio1 mediates ATP-dependent final maturation of 40S ribosomal subunits.
Nucleic acids research Oct, 2014 | Pubmed ID: 25294836
A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation.
The Journal of cell biology Nov, 2014 | Pubmed ID: 25404745
The DEAH-box helicase Dhr1 dissociates U3 from the pre-rRNA to promote formation of the central pseudoknot.
PLoS biology Feb, 2015 | Pubmed ID: 25710520
A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation.
The Journal of cell biology Jul, 2015 | Pubmed ID: 26150393
Cell populations can use aneuploidy to survive telomerase insufficiency.
Nature communications Oct, 2015 | Pubmed ID: 26489519
Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling.
Genome biology Dec, 2015 | Pubmed ID: 26679539
Loss of the Yeast SR Protein Npl3 Alters Gene Expression Due to Transcription Readthrough.
PLoS genetics Dec, 2015 | Pubmed ID: 26694144
The Nrd1-like protein Seb1 coordinates cotranscriptional 3' end processing and polyadenylation site selection.
Genes & development 07, 2016 | Pubmed ID: 27401558
Robust statistical modeling improves sensitivity of high-throughput RNA structure probing experiments.
Nature methods 01, 2017 | Pubmed ID: 27819660
Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress.
Nature communications 04, 2017 | Pubmed ID: 28400552
Specialized box C/D snoRNPs act as antisense guides to target RNA base acetylation.
PLoS genetics May, 2017 | Pubmed ID: 28542199
High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast.
Nature communications 09, 2017 | Pubmed ID: 28959008
RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination.
BMC biology 11, 2017 | Pubmed ID: 29117863
Maturation of the 90S pre-ribosome requires Mrd1 dependent U3 snoRNA and 35S pre-rRNA structural rearrangements.
Nucleic acids research 04, 2018 | Pubmed ID: 29373706
An RNA-dependent mechanism for transient expression of bacterial translocation filaments.
Nucleic acids research 04, 2018 | Pubmed ID: 29432565
High-Resolution, High-Throughput Analysis of Hfq-Binding Sites Using UV Crosslinking and Analysis of cDNA (CRAC).
Methods in molecular biology (Clifton, N.J.) , 2018 | Pubmed ID: 29484598
Purification of cross-linked RNA-protein complexes by phenol-toluol extraction.
Nature communications 03, 2019 | Pubmed ID: 30824702
Probing the RNA-Binding Proteome from Yeast to Man: Major Advances and Challenges.
Methods in molecular biology (Clifton, N.J.) , 2019 | Pubmed ID: 31602614
Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation.
eLife May, 2020 | Pubmed ID: 32356726
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