BD calcein을 사용하는 포스트 - 라벨링 및 측정은 형광 염료 AM 그들은 BD Matrigel 매트릭스를 통해 침략과 BD FluoroBlok 막 통과 후 세포 quantitation에 대해 표시됩니다. 그 결과, 세포 침공만이 종​​점 측정 얻을 수 있습니다. <ol><li> ~ 80 %의 합류에 세포를 성장. </li><li> 준비 및 삽입 시스템을 rehydrate. <ol style="list-style-type:lower-alpha;"><li> -20 ° C 저장에서 패키지를 제거하고 실온에 와서 수 있습니다. </li><li> 호일 패키지를 열고 삽입 우물의 내부 500 μL 따뜻한 (37 ° C) 미디어를 추가할 수 있습니다. 접시, 37에서 2 시간 동안 rehydrate 허용 ° C 5 % CO 2. 참고 :이 uncoated BD 팰컨 FluoroBlok 셀 마이 그 레이션 컨트롤로 사용됩니다 24 Multiwell 삽입 시스템을 rehydrate 필요는 없습니다. </li><li> rehydration 후, 조심스럽게 멤브레인에 BD Matrigel 매트릭스의 계층을 방해하지 않고 삽입 우물에서 매체를 제거합니다. 시스템은 이제 사용할 준비가되었습니다. </li></ol></li><li> 세포 monolayers을 trypsinizing 5 X 10 4 셀 / ML에서 혈청없는 DMEM에있는 세포를 resuspending하여 셀 suspensions를 준비합니다. 참고 : 다른 세포 유형을 사용하는 경우 최적의 시딩 밀도를 결정하기 위해 필요합니다. 다공성 성장 표면에 세포 유형에 대한 최적의 시딩 밀도를 확인하려면, 시딩 밀도의 범위 (셀 / cm 2) 사용하는 브라켓 비유 공성 표면에 사용되는 시딩 밀도 (즉, flasks, 요리 접시). 예를 들어, 사이의 다양한 세포 농도에서 2.5 X 10 5 세포 / cm 2, 씨앗에서 현재 종자 5 X 10 4 5 X 10 5 세포 / cm 2 최적의 초기 시딩 밀도를 결정합니다. </li><li> 혀끝의 방으로 세포 현탁액 500 μL (2.5 X 10 4 세포)를 추가합니다. </li><li> 액세스 샘플 포트를 사용하여 기저 방으로 각 chemoattractant의 750 μL (DMEM에 5% FBS)을 추가합니다. </li><li> BD의 BioCoat 종양의 침략 시스템 및 uncoated BD 팰컨 FluoroBlok 37 ° C, 5 % CO 2 분위기에서 20~22시간 24 - Multiwell 삽입 플레이트를 품어. </li><li> 부화 후, 신중하게 혀끝의 실에서 매체를 제거합니다. 이것은 폐기물 컨테이너에 내용을 flicking하여 수행할 수 있습니다. 삽입 시스템의 바닥 표면을 만지지 마십시오. </li><li> 500 μL / 음 4 μg / ML Calcein HBSS에서 AM을 포함한 초 24 - 잘 접시에 삽입 시스템을 전송합니다. 37에서 1 시간 동안 품어 ° C 5 % CO 2. 그것이 cytosolic esterases로 녹색 형광 calcein로 변환됩니다 nonfluorescent 중요한 염료이기 때문에 Calcein AM 솔루션은 형광을 읽기 전에 하부 챔버에서 제거되지 않습니다. </li><li> 침입 세포의 형광은 하단 읽기 형광 플레이트 리더에 517분의 494 NM (예 / 엠)의 파장에서 읽습니다. 게인 설정은 경험적으로 결정 할 수도 있지만, 미드 이득이 충분 출발점되어야합니다. 너무 높은 이득 설정은 높은 형광 시료와 검출기의 포화로 이어질 수 있으며, 이것은 의미있는 결과의 인수를 방지할 수 있습니다. autogain의 사용 (귀하의 리더에서 지원하는 경우)하지 않는 것이 좋습니다. 거꾸로 형광 현미경은 결과를 확인하는 데 사용할 수 있으며이에게이 분석을 실행 처음 할 특히 유용합니다. 참고 : 그것은 삽입 시스템이 올바른 플레이트지도를 사용하여 읽는 것이 가장 중요합니다. 로딩 플레이트지도에 대한 자세한 내용은 www.bdbiosciences.com 또는 문의 BD 기술 지원 (labware@bd.com)에서 BD 기술 게시판 번호 436을 참조하십시오. 접시가 판독기에 삽입되는 등 적절한 플레이트 방향은 오른쪽으로 방향 왼쪽 상단 모서리와 BD Flacon 로고에 잘 A1이다. </li></ol> 데이터 감소 데이터는 다음과 같은 등식과 같이 표현된다 : <img src="/files/ftp_upload/1475/1475eqa.jpg" alt="방정식" /> 배경 %의 세포 침공의 계산하기 전에 빼서 수 있습니다 RFU = 상대 형광 단위.

<ol>
	<li>Sethi, G., Ahn, K. S., Pandey, M. K., Aggarwal, B. B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Celastrol,+a+novel+triterpene,+potentiates+TNF-induced+apoptosis+and+suppresses+invasion+of+tumor+cells+by+inhibiting+NF-&#x03BA;B-regulated+gene+products+and+TAK1-mediated+NF-&#922;B+activation.">Celastrol, a novel triterpene, potentiates TNF-induced apoptosis and suppresses invasion of tumor cells by inhibiting NF-&#x03BA;B-regulated gene products and TAK1-mediated NF-&#922;B activation.</a> Blood. 109, 2727-2735 (2007).</li><li>Takada, Y., Kobayashi, Y., Aggarwal, B. B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Evodiamine+Aboloishes+Constitutive+and+Inducible+NF-&#x03BA;B+Activation+by+Inhibiting+I&#x03BA;B&#x03B1;+Kinase+Activation,+Thereby+Suppressing+NF-&#x03BA;B-regulated+Antiapoptotic+and+Metastatic+Gene+Expression,+Up-regulating+Apoptosis,+and+Inhibiting+Invasion.">Evodiamine Aboloishes Constitutive and Inducible NF-&#x03BA;B Activation by Inhibiting I&#x03BA;B&#x03B1; Kinase Activation, Thereby Suppressing NF-&#x03BA;B-regulated Antiapoptotic and Metastatic Gene Expression, Up-regulating Apoptosis, and Inhibiting Invasion.</a> J. Biol. Chem. 280, 17203-17212 (2005).</li><li>Harikumar, K. B., Kunnumakkara, A. B., Ahn, K. S., Anand, P., Krishnan, S., Guha, S., Aggarwal, B. B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Modification+of+the+cysteini+residues+in+I&#x03BA;B&#x03B1;+kinase+and+NF-&#x03BA;B+(p65)+by+xanthohumol+leads+to+suppression+of+NF-&#x03BA;B-regulated+gene+products+and+potentiation+of+apoptosis+in+leukemia+cells.">Modification of the cysteini residues in I&#x03BA;B&#x03B1; kinase and NF-&#x03BA;B (p65) by xanthohumol leads to suppression of NF-&#x03BA;B-regulated gene products and potentiation of apoptosis in leukemia cells.</a> Blood. , 113-2003 (2009).</li><li>Nair, A. S., Sishodia, S., Ahn, K. S., Kunnumakkara, A. B., Sethi, G., Aggarwal, B. B. D. e. g. u. e. l. i. n. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=an+Akt+Inhibitor,+Suppresses+I&#922;B&#945;+Kinase+Activation+Leading+to+Suppression+of+NF-&#x03BA;B-Regulated+Gene+Expression,+Potentiation+of+Apoptosis,+and+Inhibition+of+Cellular+Invasion.">an Akt Inhibitor, Suppresses I&#922;B&#945; Kinase Activation Leading to Suppression of NF-&#x03BA;B-Regulated Gene Expression, Potentiation of Apoptosis, and Inhibition of Cellular Invasion.</a> J. Immunol. , 177-5612 (2006).</li><li>Partridge, J., Qian, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Quantitative+and+High-Throughput+Screening+of+Tumor+Cell+Invasion+using+a+Cell-based+Model.">Quantitative and High-Throughput Screening of Tumor Cell Invasion using a Cell-based Model.</a> Society for Biomolecular Screening 2005 Conference. , (2005).</li><li>Mannuzza, F., Flaherty, P., Ilsley, S., Kramer, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=An+Improved+In+Vitro+Device+For+Measuring+Cell+Invasion+and+Method+for+its+Formation.">An Improved In Vitro Device For Measuring Cell Invasion and Method for its Formation.</a> US patent. , (2004).</li><li>Flaherty, P., Goldberger, A., Dery, O. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Effect+of+Fluorescent+Cell+Labeling+on+Tumor+Invasion+and+Screening+of+Anti-Metastatic+Compounds.">Effect of Fluorescent Cell Labeling on Tumor Invasion and Screening of Anti-Metastatic Compounds.</a> Mole. Biol. Cell. 12, 46a-46a (2001).</li><li>Flaherty, P., Mannuzza, F., Ilsley, S., Maliakal, J., Wu, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Screening+of+Anti-Metastatic+Compounds+by+a+Fluorescence+Based+Tumor+Invasion+Assay.">Screening of Anti-Metastatic Compounds by a Fluorescence Based Tumor Invasion Assay.</a> Screentech 2001 Conference. , (2005).</li><li>Mannuzza, F., Flaherty, P., Wu, M., Ilsley, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Development+of+a+Quantitative,+High-Throughput+Assay+System+for+the+Discovery+of+Anti-Cancer+Drugs.">Development of a Quantitative, High-Throughput Assay System for the Discovery of Anti-Cancer Drugs.</a> Proceedings of the Society for Biomolecular Screening. , (1999).</li></ol>

저자는이 문서에서 사용하는 시약 및 도구를 만들어 BD Biosciences의 직원입니다.

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<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">	
		
		<div>
		<table border="1">
		<thead>
		<tr>
		<th>Material Name</th>
		<th>Type</th>
		<th>Company</th>
		<th>Catalogue Number</th>
		<th>Comment</th>
		</tr>
		</thead>
		<tbody>
		
<tr>
<td>BD BioCoat Tumor Invasion System</td>
<td>&nbsp;</td>
<td>BD Biosciences</td>
<td>354165 or 354166</td>
<td>&nbsp;</td>
<tr>
<td>HT-1080 and NIH/3T3 cells</td>
<td>&nbsp;</td>
<td>ATCC</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<tr>
<td>Dulbecco&#x2019;s Modified Eagle Medium (DMEM; serum-free)</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<tr>
<td>Dulbecco&#x2019;s Phosphate Buffered Saline, without calcium and magnesium (DPBS)</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<tr>
<td>BD Falcon FluoroBlok 24-Multiwell Insert System to be used as a cell migration control</td>
<td>&nbsp;</td>
<td>BD Biosciences</td>
<td>351157 or 351158</td>
<td>&nbsp;</td>
<tr>
<td>5% Fetal Bovine Serum in DMEM</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<tr>
<td>BD Calcein AM Fluorescent Dye</td>
<td>&nbsp;</td>
<td>BD Biosciences</td>
<td>354216 or 354217</td>
<td>&nbsp;</td>
<tr>
<td>Hanks&#x2019; Balanced Salt Solution (HBSS)</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<td>&nbsp;</td>
<tr>
<td>BD Falcon 24-well plates for post cell invasion labeling</td>
<td>&nbsp;</td>
<td>BD Biosciences</td>
<td>351147</td>
<td>&nbsp;</td>
<tr>
<td>Fluorescence plate reader with bottom reading capabilities</td>
<td>&nbsp;</td>
<td>PerkinElmer EnVision (R), TECAN Infinite (R), Molecular Devices SpectraMax (R), BioTek Synergy (TM), BMG LABTECH PHERAstar.</td>
<td>&nbsp;</td>
<td>&nbsp;</td>		</tbody>
		</table>
		</div>

an in vitro fluoroblok tumor invasion assay

전이성 세포의 특징은 지하 세포막을 통해 공격해서 신체의 다른 부분으로 마이 그 레이션하는 그들의 능력입니다. 세포가 침입하기 위해 지하 막 내려 휴식뿐만​​ 아니라 마이 그 레이션 모두 분비 프로 테아제 수 있어야합니다. BD BioCoat 종양의 침략 시스템은 자신의 침략적 속성의 평가를 허용 조건과 세포를 제공합니다<em&gt; 체외에서</em<sup&gt; 1,2</sup&gt;. 그것은 BD 팰컨 FluoroBlok 24 Multiwell의 균일 BD Matrigel 매트릭스로 코팅되어 8.0 마이크론 기공 크기 PET 막과 함께 삽입 플레이트로 구성되어 있습니다. BD Matrigel 매트릭스의이 유니폼 레이어는 재구성 지하 막 역할<em&gt; 체외에서</em침략을 공부하기 위해 적절한 단백질 구조를 제시하는 동안&gt;은 비침습 세포 진정한 장벽을 제공합니다. 코팅 과정은 세포막을 통해 마이 그 레이션에서 비침습 세포를 차단, 멤브레인의 모공을 occludes. 반대로, 침략 세포로부터 자신을 분리하고 코팅 멤브레인를 통해 마이 그 레이션 할 수 있습니다. 세포 침공의 Quantitation 그러한 DiIC 같은 형광 색소를하거나 사전 또는 사후 세포 침공 라벨에 의해 얻을 수<sub&gt; 12</sub&gt; (3) 또는 calcein은 각각 오전과 침해 세포의 형광을 측정. BD FluoroBlok 막 효과적&gt; 99 % 효율에 490-700 nm의에서 빛의 통로를 차단 때문에, 찬란 - 라벨이 침공하지 않은 전지는 하단 읽기 형광 플레이트 리더에 의해 감지되지 않습니다. 그러나, 멤브레인의 아래쪽에 침공이 세포는 광원으로부터 차폐되지 더 이상하고 각 플레이트 리더로 ​​감지됩니다. 이 비디오는 calcein가 침입 세포를 감지하는 AM 사용하여 엔드 전지 침공 분석을 보여줍니다.

Watch this Scientific Journal Video about An In vitro FluoroBlok Tumor Invasion Assay at JoVE.com

An In vitro FluoroBlok Tumor Invasion Assay

이 비디오는 형광 기반의 방법론을 사용하여 세포 배양 삽입을 통해 세포의 공격을 측정하는 방법을 보여줍니다.

체외에서 FluoroBlok 종양의 침략 분석

The hallmark of metastatic cells is their ability to invade through the basement membrane and migrate to other parts of the body. Cells must be able to ...

an-in-vitro-fluoroblok-tumor-invasion-assay

Research

JoVE Journal

Biology

An In vitro FluoroBlok Tumor Invasion Assay

29.0K 조회수.  Discovery Labware. 이 비디오는 형광 기반의 방법론을 사용하여 세포 배양 삽입을 통해 세포의 공격을 측정하는 방법을 보여줍니다.

비디오: An In vitro FluoroBlok Tumor Invasion Assay

Assay for Adhesion and Agar Invasion in S. cerevisiae

Yeasts are found in natural biofilms, where many microorganisms colonize surfaces. In artificial environments, such as surfaces of man-made objects, biofilms can reduce industrial productivity, destroy structures, and threaten human life. 1-3 On the other hand, harnessing the power of biofilms can help clean the environment and generate sustainable energy. 4-8
The ability of S. cerevisiae to colonize surfaces and participate in complex biofilms was mostly ignored until the rediscovery of the differentiation programs triggered by various signaling pathways and environmental cues in this organism. 9, 10 The continuing interest in using S. cerevisiae as a model organism to understand the interaction and convergence of signaling pathways, such as the Ras-PKA, Kss1 MAPK, and Hog1 osmolarity pathways, quickly placed S. cerevisiae in the junction of biofilm biology and signal transduction research. 11-20 To this end, differentiation of yeast cells into long, adhesive, pseudohyphal filaments became a convenient readout for the activation of signal transduction pathways upon various environmental changes. However, filamentation is a complex collection of phenotypes, which makes assaying for it as if it were a simple phenotype misleading. In the past decade, several assays were successfully adopted from bacterial biofilm studies to yeast research, such as MAT formation assays to measure colony spread on soft agar and crystal violet staining to quantitatively measure cell-surface adherence. 12, 21 However, there has been some confusion in assays developed to qualitatively assess the adhesive and invasive phenotypes of yeast in agar.
Here, we present a simple and reliable method for assessing the adhesive and invasive quality of yeast strains with easy-to-understand steps to isolate the adhesion assessment from invasion assessment. Our method, adopted from previous studies, 10, 16 involves growing cells in liquid media and plating on differential nutrient conditions for growth of large spots, which we then wash with water to assess adhesion and rub cells completely off the agar surface to assess invasion into the agar. We eliminate the need for streaking cells onto agar, which affects the invasion of cells into the agar. In general, we observed that haploid strains that invade agar are always adhesive, yet not all adhesive strains can invade agar medium. Our approach can be used in conjunction with other assays to carefully dissect the differentiation steps and requirements of yeast signal transduction, differentiation, quorum sensing, and biofilm formation.

We describe a qualitative assay for yeast adhesion and agar invasion as a measure of invasive and pseudohyphal differentiation. This simple assay can be used to assess the invasive phenotype of various mutants as well as the effects environmental cues and signaling pathways on yeast differentiation.

S. cerevisiae의의 접착 및 아가르 침략을위한 분석

Yeasts are found in natural biofilms, where many microorganisms colonize surfaces. In artificial environments, such as surfaces of man-made objects, ...

연구

생물학

Isolation of Primary Mouse Trophoblast Cells and Trophoblast Invasion Assay

The placenta is responsible for the transport of nutrients, gasses and growth factors to the fetus, as well as the elimination of wastes. 
Thus, defects in placental development have important consequences for the fetus and mother, and are a major cause of embryonic lethality. The major cell type of the 
fetal portion of the placenta is the trophoblast. Primary mouse placental trophoblast cells are a useful tool for studying normal and abnormal placental development, 
and unlike cell lines, may be isolated and used to study trophoblast at specific stages of pregnancy. In addition, primary cultures of trophoblast from transgenic
mice may be used to study the role of particular genes in placental cells. The protocol presented here is based on the description by Thordarson et al.1, in which a 
percoll gradient is used to obtain a relatively pure trophoblast cell population from isolated mouse placentas. It is similar to the more widely used methods for 
human trophoblast cell isolation2-3. Purity may be assessed by immunocytochemical staining of the isolated cells for cytokeratin 74. Here, the isolated cells are 
then analyzed using a matrigel invasion assay to assess trophoblast invasiveness in vitro5-6. The invaded cells are analyzed by immunocytochemistry and stained 
for counting.

In this protocol, we describe the dissection of placentae from the mouse on pregnancy d10.5, followed by isolation of trophoblast cells using a Percoll gradient. We then demonstrate use of the isolated cells in a matrigel invasion assay.

기본 마우스 Trophoblast 셀 및 Trophoblast의 침략 분석의 절연

The placenta is responsible for the transport of nutrients, gasses and growth factors to the fetus, as well as the elimination of wastes.  
Thus, defects ...

Application of an In vitro DNA Protection Assay to Visualize Stress Mediation Properties of the Dps Protein

Oxidative stress is an unavoidable byproduct of aerobic life. Molecular oxygen is essential for terrestrial metabolism, but it also takes part in many damaging reactions within living organisms. The combination of aerobic metabolism and iron, which is another vital compound for life, is enough to produce radicals through Fenton chemistry and degrade cellular components. DNA degradation is arguably the most damaging process involving intracellular radicals, as DNA repair is far from trivial. The assay presented in this article offers a quantitative technique to measure and visualize the effect of molecules and enzymes on radical-mediated DNA damage.
The DNA protection assay is a simple, quick, and robust tool for the in vitro characterization of the protective properties of proteins or chemicals. It involves exposing DNA to a damaging oxidative reaction and adding varying concentrations of the compound of interest. The reduction or increase of DNA damage as a function of compound concentration is then visualized using gel electrophoresis. In this article we demonstrate the technique of the DNA protection assay by measuring the protective properties of the DNA-binding protein from starved cells (Dps). Dps is a mini-ferritin that is utilized by more than 300 bacterial species to powerfully combat environmental stressors. Here we present the Dps purification protocol and the optimized assay conditions for evaluating DNA protection by Dps.

Application of an In vitro DNA Protection Assay to Visualize Stress Mediation Properties of the Dps Protein

The DNA-binding protein from starved cells (Dps) plays a crucial role in combating bacterial stress. This article discusses the purification of E. coli Dps and the protocol for an in vitro assay demonstrating Dps-mediated protection of DNA from degradation by reactive oxygen species.

의 적용<em&gt; 체외</emDPS 단백질의 스트레스 중재 속성을 시각화&gt; DNA 보호 분석

Oxidative stress is an unavoidable byproduct of  aerobic life.  Molecular oxygen is  essential for terrestrial metabolism, but it also takes part in many ...

A Quantitative Assay to Study Protein:DNA Interactions, Discover Transcriptional Regulators of Gene Expression, and Identify Novel Anti-tumor Agents

Many DNA-binding assays such as electrophoretic mobility shift assays (EMSA), chemiluminescent assays, chromatin immunoprecipitation (ChIP)-based assays, and multiwell-based assays are used to measure transcription factor activity. However, these assays are nonquantitative, lack specificity, may involve the use of radiolabeled oligonucleotides, and may not be adaptable for the screening of inhibitors of DNA binding. On the other hand, using a quantitative DNA-binding enzyme-linked immunosorbent assay (D-ELISA) assay, we demonstrate nuclear protein interactions with DNA using the RUNX2 transcription factor that depend on specific association with consensus DNA-binding sequences present on biotin-labeled oligonucleotides. Preparation of cells, extraction of nuclear protein, and design of double stranded oligonucleotides are described. Avidin-coated 96-well plates are fixed with alkaline buffer and incubated with nuclear proteins in nucleotide blocking buffer. Following extensive washing of the plates, specific primary antibody and secondary antibody incubations are followed by the addition of horseradish peroxidase substrate and development of the colorimetric reaction. Stop reaction mode or continuous kinetic monitoring were used to quantitatively measure protein interaction with DNA. We discuss appropriate specificity controls, including treatment with non-specific IgG or without protein or primary antibody. Applications of the assay are described including its utility in drug screening and representative positive and negative results are discussed.

We developed a quantitative DNA-binding, ELISA-based assay to measure transcription factor interactions with DNA. High specificity for the RUNX2 protein was achieved with a consensus DNA-recognition oligonucleotide and specific monoclonal antibody. Colorimetric detection with an enzyme-coupled antibody substrate reaction was monitored in real time.

유전자 발현의 DNA 상호 작용, 디스 전사 레귤레이터, 그리고 소설 안티 종양 에이전트를 식별 : 단백질을 연구하는 정량 분석

Many DNA-binding assays such as electrophoretic mobility shift assays (EMSA), chemiluminescent assays, chromatin immunoprecipitation (ChIP)-based assays, ...

In vitro Cell Migration and Invasion Assays

Migration is a key property of live cells and critical for normal development, immune response, and disease processes such as cancer metastasis and inflammation. Methods to examine cell migration are very useful and important for a wide range of biomedical research such as cancer biology, immunology, vascular biology, cell biology and developmental biology. Here we use tumor cell migration and invasion as an example and describe two related assays to illustrate the commonly used, easily accessible methods to measure these processes. The first method is the cell culture wound closure assay in which a scratch is generated on a confluent cell monolayer. The speed of wound closure and cell migration can be quantified by taking snapshot pictures with a regular inverted microscope at several time intervals. More detailed cell migratory behavior can be documented using the time-lapse microscopy system. The second method described in this paper is the transwell cell migration and invasion assay that measures the capacity of cell motility and invasiveness toward a chemo-attractant gradient. It is our goal to describe these methods in a highly accessible manner so that the procedures can be successfully performed in research laboratories even just with basic cell biology setup.

In vitro Cell Migration and Invasion Assays

Commonly used, highly accessible methods for examining cell migration and invasion in vitro are described. The first method is the cell wound closure assay that measures cell motility. The second method is the transwell migration and invasion assay that assesses the chemotactic and invasive capacity of cells.

체외 세포 이동 및 내습 분석 실험에서

Migration is a key property of live cells and critical for normal development, immune response, and disease processes such as cancer metastasis and ...

An Assay for Lateral Line Regeneration in Adult Zebrafish

Due to the clinical importance of hearing and balance disorders in man, model organisms such as the zebrafish have been used to study lateral line development and regeneration. The zebrafish is particularly attractive for such studies because of its rapid development time and its high regenerative capacity. To date, zebrafish studies of lateral line regeneration have mainly utilized fish of the embryonic and larval stages because of the lower number of neuromasts at these stages. This has made quantitative analysis of lateral line regeneration/and or development easier in the earlier developmental stages. Because many zebrafish models of neurological and non-neurological diseases are studied in the adult fish and not in the embryo/larvae, we focused on developing a quantitative lateral line regenerative assay in adult zebrafish so that an assay was available that could be applied to current adult zebrafish disease models. Building on previous studies by Van Trump et al.17&#160;that described procedures for ablation of hair cells in adult Mexican blind cave fish and zebrafish (Danio rerio), our assay was designed to allow quantitative comparison between control and experimental groups. This was accomplished by developing a regenerative neuromast standard curve based on the percent of neuromast reappearance over a 24 hr time period following gentamicin-induced necrosis of hair cells in a defined region of the lateral line. The assay was also designed to allow extension of the analysis to the individual hair cell level when a higher level of resolution is required.

Because many zebrafish models of neurological and non-neurological diseases are studied in the adult fish rather than the embryo/larvae, we developed a quantitative lateral line regenerative assay that can be applied to adult zebrafish disease models. The assay involved resolution at the 1) neuromast and 2) individual hair cell levels.

성인 Zebrafish의의 측면 라인 재생을위한 분석

Due to the clinical importance of hearing and balance disorders in man, model organisms such as the zebrafish have been used to study lateral line ...

In vitro Methylation Assay to Study Protein Arginine Methylation

Protein arginine methylation is one of the most abundant post-translational modifications in the nucleus. Protein arginine methylation can be identified and/or determined via proteomic approaches, and/or immunoblotting with methyl-arginine specific antibodies. However, these techniques sometimes can be misleading and often provide false positive results. Most importantly, these techniques cannot provide direct evidence in support of the PRMT substrate specificity. In vitro methylation assays, on the other hand, are useful biochemical assays, which are sensitive, and consistently reveal if the identified proteins are indeed PRMT substrates. A typical in vitro methylation assay includes purified, active PRMTs, purified substrate and a radioisotope labeled methyl donor (S-adenosyl-L-[methyl-3H] methionine). Here we describe a step-by-step protocol to isolate catalytically active PRMT1, a ubiquitously expressed PRMT family member. The methyl transferase activities of the purified PRMT1 were later tested on Ras-GTPase activating protein binding protein 1 (G3BP1), a known PRMT substrate, in the presence of S-adenosyl-L-[methyl-3H] methionine as the methyl donor. This protocol can be employed not only for establishing the methylation status of novel physiological PRMT1 substrates, but also for understanding the basic mechanism of protein arginine methylation.

In vitro Methylation Assay to Study Protein Arginine Methylation

Protein arginine methylation, catalyzed by a class of enzymes viz., protein arginine methyl transferases (PRMTs), is the process of enzymatic addition of methyl group(s) to arginines within proteins. The in vitro methylation assay is the most dependable tool for assessing the methylation status of known or novel PRMT substrates.

체외 메틸화 분석에서 단백질 아르기닌 메틸화를 공부합니다

Protein arginine methylation is one of the most abundant post-translational modifications in the nucleus. Protein arginine methylation can be identified ...

In Vitro Assay to Measure Phosphatidylethanolamine Methyltransferase Activity

Phosphatidylethanolamine methyltransferases are biosynthetic enzymes that catalyze the transfer of one or more methyl group(s) from S-adenosyl-L-methionine onto phosphatidylethanolamine, monomethyl-phosphatidylethanolamine, or dimethyl-phosphatidylethanolamine to give either monomethyl-phosphatidylethanolamine, dimethyl-phosphatidylethanolamine or phosphatidylcholine. These enzymes are ubiquitous in animal cells, fungi, and are also found in approximately 10% of bacteria. They fulfill various important functions in cell physiology beyond their direct role in lipid metabolism such as in insulin resistance, diabetes, atherosclerosis, cell growth, or virulence. The present manuscript reports on a simple cell-free enzymatic assay that measures the transfer of tritiated methyl group(s) from S-[Methyl-3H]adenosyl-L-methionine onto phosphatidylethanolamine using whole cell extracts as an enzyme source. The resulting methylated forms of phosphatidylethanolamine are hydrophobic and thus, can be separated from water soluble S-[Methyl-3H]adenosyl-L-methionine by organic extraction. This assay can potentially be applied to any other cell types and used to test inhibitors/drugs specific to a phosphatidylethanolamine methyltransferase of interest without the need to purify the enzyme.

In Vitro Assay to Measure Phosphatidylethanolamine Methyltransferase Activity

The present report describes an in vitro enzymatic assay to measure phosphatidylethanolamine methyltransferase activity using Leishmania cell extracts. This assay is based on the transfer of a radioactive methyl group from S-[Methyl-3H]adenosyl-L-methionine onto endogenous phosphatidylethanolamine.

시험 관내 분석에서 포스파티딜 메틸화 된 역가를 측정하는 방법

Phosphatidylethanolamine methyltransferases are biosynthetic enzymes that catalyze the transfer of one or more methyl group(s) from ...

In Vitro SUMOylation Assay to Study SUMO E3 Ligase Activity

Small ubiquitin-like modifier (SUMO) modification is an important post-translational modification (PTM) that mediates signal transduction primarily through modulating protein-protein interactions. Similar to ubiquitin modification, SUMOylation is directed by a sequential enzyme cascade including E1-activating enzyme (SAE1/SAE2), E2-conjugation enzyme (Ubc9), and E3-ligase (i.e., PIAS family, RanBP2, and Pc2). However, different from ubiquitination, an E3 ligase is non-essential for the reaction but does provide precision and efficacy for SUMO conjugation. Proteins modified by SUMOylation can be identified by in vivo assay via immunoprecipitation with substrate-specific antibodies and immunoblotting with SUMO-specific antibodies. However, the demonstration of protein SUMO E3 ligase activity requires in vitro reconstitution of SUMOylation assays using purified enzymes, substrate, and SUMO proteins. Since in the in vitro reactions, usually SAE1/SAE2 and Ubc9, alone are sufficient for SUMO conjugation, enhancement of SUMOylation by a putative E3 ligase is not always easy to detect. Here, we describe a modified in vitro SUMOylation protocol that consistently identifies SUMO modification using an in vitro reconstituted system. A step-by-step protocol to purify catalytically active K-bZIP, a viral SUMO-2/3 E3 ligase, is also presented. The SUMOylation activities of the purified K-bZIP are shown on p53, a well-known target of SUMO. This protocol can not only be employed for elucidating novel SUMO E3 ligases, but also for revealing their SUMO paralog specificity.

In Vitro SUMOylation Assay to Study SUMO E3 Ligase Activity

Unlike ubiquitin ligases, few E3 SUMO ligases have been identified. This modified in vitro SUMOylation protocol is able to identify novel SUMO E3 ligases by an in vitro reconstitution assay.

생체 외에서 스모 E3 리가 활동 공부 SUMOylation 분석 결과

Small ubiquitin-like modifier (SUMO) modification is an important post-translational modification (PTM) that mediates signal transduction primarily ...

Optimized Scratch Assay for In Vitro Testing of Cell Migration with an Automated Optical Camera

Cell migration is an important process that influences many aspects of health, such as wound healing and cancer, and it is, therefore, crucial for developing methods to study the migration. The scratch assay has long been the most common in vitro method to test compounds with anti- and pro-migration properties because of its low cost and simple procedure. However, an often-reported problem of the assay is the accumulation of cells across the edge of the scratch. Furthermore, to obtain data from the assay, images of different exposures must be taken over a period of time at the exact same spot to compare the movements of the migration. Different analysis programs can be used to describe the scratch closure, but they are labor intensive, inaccurate, and forces cycles of temperature changes. In this study, we demonstrate an optimized method for testing the migration effect, e.g. with the naturally occurring proteins Human- and Bovine-Lactoferrin and their N-terminal peptide Lactoferricin on the epithelial cell line HaCaT. A crucial optimization is to wash and scratch in PBS, which eliminates the aforementioned accumulation of cells along the edge. This could be explained by the removal of cations, which have been shown to have an effect on keratinocyte cell-cell connection. To ensure true detection of migration, pre-treating with mitomycin C, a DNA synthesis inhibitor, was added to the protocol. Finally, we demonstrate the automated optical camera, which eliminates excessive temperature cycles, manual labor with scratch closure analysis, while improving on reproducibility and ensuring analysis of identical sections of the scratch over time.

Optimized Scratch Assay for In Vitro Testing of Cell Migration with an Automated Optical Camera

Here we describe a procedure to test the cell migration in vitro with an automated optical camera microscope. The scratch assay has been widely used where the closure of the scratch is followed for a set period. The optical microscope enables dependable and cheap detection of cell migration.