This work was supported by the Intramural Programs of the National Institute of Neurological Disorders and Stroke (NINDS) and National Institute on Deafness and Other Communication Disorders (NIDCD), of the National Institutes of Health (NIH). We thank the NINDS EM facility and the NIDCD advanced imaging core (code # ZIC DC 000081-03) for assistance.

Care and handling of animals were in accordance with NIH Animal Care and Use Committee Guidelines. Postnatal day (P) 15-21 Sprague-Dawley rats, injected with 1-1.2% CTB bilaterally through the superior colliculus, were maintained on a 12:12-hr light:dark cycle.
1. Retinal Tissue Fixation
<ol>
	<li>Assemble the following materials and tools: A dissecting microscope, 2 forceps with very fine tips, scissors, cellulose filter paper, plastic pipette and a microscope slide.</li>
	<li>Anesthetize t...

<ol>
	<li>Copenhagen, D. R., Jahr, C. E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Release+of+endogenous+excitatory+amino+acids+from+turtle+photoreceptors.">Release of endogenous excitatory amino acids from turtle photoreceptors.</a> Nature. 341, 536-539 (1989).</li><li>W&#228;ssle, H., Boycott, B. B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Functional+architecture+of+the+mammalian+retina.">Functional architecture of the mammalian retina.</a> Physiol. Rev. 71, 447-480 (1991).</li><li>Mittman, S., Taylor, W. R., Copenhagen, D. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Concomitant+activation+of+two+types+of+glutamate+receptor+mediates+excitation+of+salamander+retinal+ganglion+cells.">Concomitant activation of two types of glutamate receptor mediates excitation of salamander retinal ganglion cells.</a> J. Physiol. 428, 175-197 (1990).</li><li>Matsui, K., Hosoi, N., Tachibana, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Excitatory+synaptic+transmission+in+the+inner+retina:+paired+recordings+of+bipolar+cells+and+neurons+of+the+ganglion+cell+layer.">Excitatory synaptic transmission in the inner retina: paired recordings of bipolar cells and neurons of the ganglion cell layer.</a> J. Neurosci. 18, 4500-4510 (1998).</li><li>Chen, S., Diamond, J. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Synaptically+released+glutamate+activates+extrasynaptic+NMDA+receptors+on+cells+in+the+ganglion+cell+layer+of+rat+retina.">Synaptically released glutamate activates extrasynaptic NMDA receptors on cells in the ganglion cell layer of rat retina.</a> J. Neurosci. 22, 2165-2173 (2002).</li><li>Diamond, J. S., Copenhagen, D. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+contribution+of+NMDA+and+non-NMDA+receptors+to+the+light-evoked+input-output+characteristics+of+retinal+ganglion+cells.">The contribution of NMDA and non-NMDA receptors to the light-evoked input-output characteristics of retinal ganglion cells.</a> Neuron. 11, 725-738 (1993).</li><li>Lukasiewicz, P. D., Wilson, J. A., Lawrence, J. E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=AMPA-preferring+receptors+mediate+excitatory+synaptic+inputs+to+retinal+ganglion+cells.">AMPA-preferring receptors mediate excitatory synaptic inputs to retinal ganglion cells.</a> J. Neurophysiol. 77, 57-64 (1997).</li><li>Higgs, M. H., Lukasiewicz, P. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Glutamate+uptake+limits+synaptic+excitation+of+retinal+ganglion+cells.">Glutamate uptake limits synaptic excitation of retinal ganglion cells.</a> J. Neurosci. 19, 3691-3700 (1999).</li><li>Taylor, W. R., Chen, E., Copenhagen, D. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Characterization+of+spontaneous+excitatory+synaptic+currents+in+salamander+retinal+ganglion+cells.">Characterization of spontaneous excitatory synaptic currents in salamander retinal ganglion cells.</a> J. Physiol. 486, 207-221 (1995).</li><li>Kennedy, M. B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Origin+of+PDZ+(DHR,+GLGF)+domains.">Origin of PDZ (DHR, GLGF) domains.</a> Trends. Biochem. Sci. 20, 350 (1995).</li><li>Kim, E., Sheng, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=PDZ+domain+proteins+of+synapses.">PDZ domain proteins of synapses.</a> Nat. Rev. Neurosci. 5, 771-781 (2004).</li><li>Migaud, M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Enhanced+long-term+potentiation+and+impaired+learning+in+mice+with+mutant+postsynaptic+density-95+protein.">Enhanced long-term potentiation and impaired learning in mice with mutant postsynaptic density-95 protein.</a> Nature. 396, 433-439 (1998).</li><li>Aoki, C., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Electron+microscopic+immunocytochemical+detection+of+PSD-95,+PSD-93,+SAP-102,+and+SAP-97+at+postsynaptic,+presynaptic,+and+nonsynaptic+sites+of+adult+and+neonatal+rat+visual+cortex.">Electron microscopic immunocytochemical detection of PSD-95, PSD-93, SAP-102, and SAP-97 at postsynaptic, presynaptic, and nonsynaptic sites of adult and neonatal rat visual cortex.</a> Synapse. 40, 239-257 (2001).</li><li>Davies, C., Tingley, D., Kachar, B., Wenthold, R. J., Petralia, R. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Distribution+of+members+of+the+PSD-95+family+of+MAGUK+proteins+at+the+synaptic+region+of+inner+and+outer+hair+cells+of+the+guinea+pig+cochlea.">Distribution of members of the PSD-95 family of MAGUK proteins at the synaptic region of inner and outer hair cells of the guinea pig cochlea.</a> Synapse. 40, 258-268 (2001).</li><li>Hartveit, E., Brandst&#228;tter, J. H., Sasso&#232;-Pognetto, M., Laurie, D. J., Seeburg, P. H., W&#228;ssle, H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Localization+and+developmental+expression+of+the+NMDA+receptor+subunit+NR2A+in+the+mammalian+retina.">Localization and developmental expression of the NMDA receptor subunit NR2A in the mammalian retina.</a> J. Comp. Neurol. 348, 570-582 (1994).</li><li>Fletcher, E. L., Hack, I., Brandst&#228;tter, J. H., W&#228;ssle, H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Synaptic+localization+of+NMDA+receptor+subunits+in+the+rat+retina.">Synaptic localization of NMDA receptor subunits in the rat retina.</a> J. Comp. Neurol. 420, 98-112 (2000).</li><li>Pourcho, R. G., Qin, P., Goebel, D. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cellular+and+subcellular+distribution+of+NMDA+receptor+subunit+NR2B+in+the+retina.">Cellular and subcellular distribution of NMDA receptor subunit NR2B in the retina.</a> J. Comp. Neurol. 433, 75-85 (2001).</li><li>Ottersen, O. P., Landsend, A. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Organization+of+glutamate+receptors+at+the+synapse.">Organization of glutamate receptors at the synapse.</a> Eur. J. Neurosci. 9, 2219-2224 (1997).</li><li>Petralia, R. S., Wenthold, R. J., Ariano, M. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Glutamate+receptor+antibodies:+Production+and+immunocytochemistry.">Glutamate receptor antibodies: Production and immunocytochemistry.</a> Receptor Localization: Laboratory Methods and Procedures. , 46-74 (1998).</li><li>Petralia, R. S., Wenthold, R. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Immunocytochemistry+of+NMDA+receptors.">Immunocytochemistry of NMDA receptors.</a> Methods. Mol. Biol. 128, 73-92 (1999).</li><li>Nusser, Z. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=AMPA+and+NMDA+receptors:+similarities+and+differences+in+their+synaptic+distribution.">AMPA and NMDA receptors: similarities and differences in their synaptic distribution.</a> Curr. Opin. Neurobiol. 10, 337-341 (2000).</li><li>Qin, P., Pourcho, R. G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Localization+of+AMPA-selective+glutamate+receptor+subunits+in+the+cat+retina:+a+light-+and+electron-microscopic+study.">Localization of AMPA-selective glutamate receptor subunits in the cat retina: a light- and electron-microscopic study.</a> Vis. Neurosci. 16, 169-177 (1999).</li><li>Zhang, J., Wang, H. H., Yang, C. Y. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Synaptic+organization+of+GABAergic+amacrine+cells+in+salamander+retina.">Synaptic organization of GABAergic amacrine cells in salamander retina.</a> Visual. Neurosci. 21, 817-825 (2004).</li><li>Zhang, J., Diamond, J. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Distinct+perisynaptic+and+synaptic+localization+of+NMDA+and+AMPA+receptors+on+ganglion+cells+in+rat+retina.">Distinct perisynaptic and synaptic localization of NMDA and AMPA receptors on ganglion cells in rat retina.</a> J. Comp. Neurol. 498, 810-820 (2006).</li><li>Zhang, J., Diamond, J. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Subunit-+and+Pathway-Specific+Localization+of+NMDA+Receptors+and+Scaffolding+Proteins+at+Ganglion+Cell+Synapses+in+Rat+Retina.">Subunit- and Pathway-Specific Localization of NMDA Receptors and Scaffolding Proteins at Ganglion Cell Synapses in Rat Retina.</a> J. Neurosci. 29, 4274-4286 (2009).</li><li>Peters, A., Palay, S., Webster, H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> The fine structure of the nervous system: neurons and their supporting cells, 3rd ed. , (1991).</li><li>Baude, A., Nusser, Z., Roberts, J. D. B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+metabotropic+glutamate+receptor+(mGluR1)+is+concentrated+at+perisynaptic+membrane+of+neuronal+subpopulations+as+detected+by+immunogold+reaction.">The metabotropic glutamate receptor (mGluR1) is concentrated at perisynaptic membrane of neuronal subpopulations as detected by immunogold reaction.</a> Neuron. 11, 771-787 (1993).</li><li>Van Lookeren Campagne, M., Oestreicher, A. B., van der Krift, T. P., Gispen, W. H., Verkleij, A. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Freeze-substitution+and+Lowicryl+HM20+embedding+of+fixed+rat+brain:+Suitability+for+immunogold+ultrastructural+localization+of+neural+antigens.">Freeze-substitution and Lowicryl HM20 embedding of fixed rat brain: Suitability for immunogold ultrastructural localization of neural antigens.</a> J. Hist. Cyt. 39, 1267-1279 (1991).</li><li>Matsubara, A., Laake, J. H., Davanger, S., Usami, S., Ottersen, O. P. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Organization+of+AMPA+receptor+subunits+at+a+glutamate+synapse:+A+quantitative+immunogold+analysis+of+hair+cell+synapses+in+the+rat+organ+of+Corti.">Organization of AMPA receptor subunits at a glutamate synapse: A quantitative immunogold analysis of hair cell synapses in the rat organ of Corti.</a> J. Neurosci. 16, 4457-4467 (1996).</li><li>Petralia, R. S., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Organization+of+NMDA+receptors+at+extrasynaptic+locations.">Organization of NMDA receptors at extrasynaptic locations.</a> Neuroscience. 167, 68-87 (2010).</li><li>Merighi, A., Polak, J. M., Priestley, J. V. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Post-embedding+electron+microscopic+immunocytochemistry.">Post-embedding electron microscopic immunocytochemistry.</a> Electron Microscopic Immunocytochemistry: Principles and Practice. , 51-87 (1992).</li><li>Ottersen, O. P., Takumi, Y., Matsubara, A., Landsend, A. S., Laake, J. H., Usami, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Molecular+organization+of+a+type+of+peripheral+glutamate+synapse:+the+afferent+synapses+of+hair+cells+in+the+inner+ear.">Molecular organization of a type of peripheral glutamate synapse: the afferent synapses of hair cells in the inner ear.</a> Prog. Neurobiol. 54, 127-148 (1998).</li><li>Nusser, Z., Lujan, R., Laube, G., Roberts, J. D., Molnar, E., Somogyi, P. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cell+type+and+pathway+dependence+of+synaptic+AMPA+receptor+number+and+variability+in+the+hippocampus.">Cell type and pathway dependence of synaptic AMPA receptor number and variability in the hippocampus.</a> Neuron. 21, 545-559 (1998).</li><li>Takumi, Y., Ramirez-Leon, V., Laake, P., Rinvik, E., Ottersen, O. P. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Different+modes+of+expression+of+AMPA+and+NMDA+receptors+in+hippocampal+synapses.">Different modes of expression of AMPA and NMDA receptors in hippocampal synapses.</a> Nat. Neurosci. 2, 618-624 (1999).</li><li>Grimes, W. N., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Complex+inhibitory+microcircuitry+regulates+retinal+signaling+near+visual+threshold.">Complex inhibitory microcircuitry regulates retinal signaling near visual threshold.</a> J. Neurophysiol. 114, 341-353 (2015).</li><li>Sassoe-Pognetto, M., Ottersen, O. P. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Organization+of+ionotropic+glutamate+receptors+at+dendrodendritic+synapses+in+the+rat+olfactory+bulb.">Organization of ionotropic glutamate receptors at dendrodendritic synapses in the rat olfactory bulb.</a> J. Neurosci. 20, 2192-2201 (2000).</li></ol>

We have described four techniques for successful quantitative post-embedding immunogold EM: 1) short and weak fixation, 2) freeze-substitution, 3) post-embedding immunogold staining, and 4) quantification.
EM immunogold allows the detection of specific proteins in ultrathin tissue sections. Antibodies labeled with gold particles can be directly visualized using EM. While powerful in detecting the subsynaptic localization of a membrane receptor, EM immunogold can be technically challenging, and...

Glutamate is the major excitatory neurotransmitter in the retina1. Retinal ganglion cells (RGCs), receiving glutamatergic synaptic input from bipolar cells2, are the output neurons of the retina that send visual information to the brain. Physiological studies showed that synaptic excitation of RGCs is mediated postsynaptically by NMDA receptors (NMDARs) and AMPA receptors (AMPARs) 3,4,5. Although excitatory postsynaptic currents (EPSCs) in RGCs are mediated by AMPARs and NMDARs3,5,6,7,8 , spontaneous miniature EPSCs (mEPSCs) on RGCs exhibit only an AMPARs-mediated component 4,5,9. However, reducing glutamate uptake revealed an NMDAR component in spontaneous EPSCs5, suggesting that NMDARs on RGC dendrites may be located outside of excitatory synapses . Membrane-associated guanylate kinases (MAGUKs) such as PSD-95 that cluster neurotransmitter receptors, including glutamate receptors and ion channels at synaptic sites, also exhibit distinct subsynaptic expression patterns 10,11,12,13,14.
Over recent decades, confocal immunohistochemistry and pre-embedding electron microscope (EM) immunohistochemistry have been employed to study membrane receptor expression. Although confocal immunostaining reveals broad patterns of receptor expression, its lower resolution makes it impossible to use to distinguish subcellular location. Pre-embedding EM studies in mammalian retina indicate that NMDAR subunits are present in postsynaptic elements at cone bipolar cell ribbon synapses 15,16,17. This is in apparent contrast to physiological evidence. However, diffusion of reaction product is a well-known artifact in the pre-embedding immunoperoxidase method. Hence, this approach does not usually give statistically reliable data and may exclude distinction between localization to synaptic membrane versus extrasynaptic membrane 18,19,20,21. On the other hand, physiological and anatomical data are consistent with a synaptic localization of AMPARs on RGCs 3,5,7,9,22. Thus, glutamate receptors and MAGUKs at retinal ribbon synapse are localized not only to the postsynaptic but also to the perisynaptic or extrasynaptic membrane compartments. However, a high-resolution quantitative analysis of these membrane proteins in a retinal ribbon synapse is still needed.
Here, we developed a postembedding EM immunogold technique to examine the subsynaptic localization of NMDAR subunits, AMPAR subunits and PSD-95 followed by estimating the number, density and variability of these proteins at synapses onto rat RGCs labeled using cholera toxin subunit B (CTB) retrograde tracing methods.

<table border="0" cellpadding="0" cellspacing="0" width="761">
	<tbody>
		<tr height="21">
			<td height="21" style="height:21px;width:300px;">Paraformaldehyde</td>
			<td style="width:167px;">EMS</td>
			<td style="width:127px;">15710</td>
			<td style="width:167px;"></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Glutarldehyde</td>
			<td>EMS</td>
			<td>16019</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">NaH2PO4</td>
			<td>Sigma</td>
			<td>S9638</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Na2HPO4</td>
			<td>Sigma</td>
			<td style="width:127px;">7782-85-6</td>
			<td style="width:167px;"></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">CaCl2</td>
			<td>Sigma</td>
			<td>C-8106</td>
			<td style="width:167px;"></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">BSA</td>
			<td>Sigma</td>
			<td>A-7030</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Triton X-100</td>
			<td>Sigma</td>
			<td>T-8787</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">NaOH</td>
			<td>Sigma</td>
			<td>221465</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">NaN3</td>
			<td>JT Baker</td>
			<td>V015-05</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Glycerol</td>
			<td>Gibco BRL</td>
			<td>15514-011</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Lowicryl HM 20</td>
			<td>Polysciences</td>
			<td>15924-1</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Tris-Base</td>
			<td>Fisher</td>
			<td>BP151-500</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Tris</td>
			<td>Fisher</td>
			<td>04997-100</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Anti-GluN2A</td>
			<td>Millipore</td>
			<td>AB1555P</td>
			<td>Dilution 1/50</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Anti-GluN2B</td>
			<td>Millipore</td>
			<td>AB1557P</td>
			<td>Dilution 1/30</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Anti-GluA2/3</td>
			<td>Millipore</td>
			<td>AB1506</td>
			<td>Dilution 1/30</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Anti-PSD-95</td>
			<td>Millipore</td>
			<td>MA1&#8211;046</td>
			<td>Dilution 1/100</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Donkey anti-rabbit IgG-10 nm gold particles</td>
			<td>EMS</td>
			<td>25704</td>
			<td>Dilution 1/20</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Donkey anti-mouse IgG-10 nm gold particles</td>
			<td>EMS</td>
			<td>25814</td>
			<td>Dilution 1/20</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Donkey anti-mouse IgG-5 nm gold particles</td>
			<td>EMS</td>
			<td>25812</td>
			<td>Dilution 1/20</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Donkey anti-goat IgG-18 nm gold particles</td>
			<td>Jackson ImmunoResearch</td>
			<td style="width:127px;">705-215-147</td>
			<td>Dilution 1/20</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Formvar-Carbon coated nickel-slot grids.</td>
			<td>EMS</td>
			<td>FCF2010-Ni</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Uranyl acetate</td>
			<td>EMS</td>
			<td>22400-1</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Methanol</td>
			<td>EMS</td>
			<td>67-56-1</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Lead citrate</td>
			<td>Leica</td>
			<td></td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Leica EM AFS</td>
			<td>Leica</td>
			<td></td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Leica EM CPC</td>
			<td>Leica</td>
			<td></td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Ultromicrotome</td>
			<td>Leica</td>
			<td></td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">JEOL 1200 EM</td>
			<td>JEOL</td>
			<td></td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">liquid nitrogen&#160;</td>
			<td>Roberts Oxygen</td>
			<td></td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Propane</td>
			<td>Roberts Oxygen</td>
			<td></td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">CTB</td>
			<td>List Biological Laboratories</td>
			<td>104</td>
			<td>1-1.2%</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;">Anti-CTB</td>
			<td>List Biological Laboratories</td>
			<td>703</td>
			<td>Dilution 1/4000</td>
		</tr>
	</tbody>
</table>

high-resolution quantitative immunogold analysis of membrane receptors at retinal ribbon synapses

Retinal ganglion cells (RGCs) receive excitatory glutamatergic input from bipolar cells. Synaptic excitation of RGCs is mediated postsynaptically by NMDA receptors (NMDARs) and AMPA receptors (AMPARs). Physiological data have indicated that glutamate receptors at RGCs are expressed not only in postsynaptic but also in perisynaptic or extrasynaptic membrane compartments. However, precise anatomical locations for glutamate receptors at RGC synapses have not been determined. Although a high-resolution quantitative analysis of glutamate receptors at central synapses is widely employed, this approach has had only limited success in the retina. We developed a postembedding immunogold method for analysis of membrane receptors, making it possible to estimate the number, density and variability of these receptors at retinal ribbon synapses. Here we describe the tools, reagents, and the practical steps that are needed for: 1) successful preparation of retinal fixation, 2) freeze-substitution, 3) postembedding immunogold electron microscope (EM) immunocytochemistry and, 4) quantitative visualization of glutamate receptors at ribbon synapses.

The results presented here demonstrate strikingly different subsynaptic localization patterns of GluA 2/3 and NMDARs on RGC dendrites in rat retina, as described previously 24,25. 77% of GluA 2/3 immunogold particles in RGC dendritic profiles were located within the PSD (Figure 1A), similar to most central synapses. However, NMDARs were located either synaptically or extrasynaptically. 83% of GluN2A immunogold particles were localized in the PSD (Figure...

Watch this Scientific Journal Video about High-Resolution Quantitative Immunogold Analysis of Membrane Receptors at Retinal Ribbon Synapses at JoVE.com

High-Resolution Quantitative Immunogold Analysis of Membrane Receptors at Retinal Ribbon Synapses

The postembedding immunogold method is one of the most effective ways to provide high-resolution analyses of the subcellular localization of specific molecules. Here we describe a protocol to quantitatively analyze glutamate receptors at retinal ribbon synapses.

Retinal ganglion cells (RGCs) receive excitatory glutamatergic input from bipolar cells. Synaptic excitation of RGCs is mediated postsynaptically by NMDA ...

The overall goal of this experiment is to develop a new approach to analyze membrane proteins at retinal ribbon synapses quantitatively. This method can help answer key questions in the retinal neurobiology field such as the precise location of proteins at synapses within the circuit. The main advantage of technique is that it can estimate the number, density, and rapidity of multiple proteins at retinal ribbon synapses.Demonstrating the procedure of freeze-substitution and the ultra-thin sectioning we have docs Ron Petralia and Ya-Xian Wang from the NIDCD Advanced Imaging Core. To begin this procedure dissect an eyeball under the microscope. To do so, first remove the cornea.Then remove the lens and vitreous from the inter-retinal surface with forceps. Afterward, peel the sclera until the retina is isolated from the eyecup. Cut the retina immediately into 100 200 micrometer thick strips with a razor.Subsequently, mix the retina strips in 4%paraformaldehyde in 0.1 molar PB.Then, in 4%paraformaldehyde plus 0.01%glutaraldehyde at room temperature. After several washes in PB, with 0.15 millimolar calcium chloride, cryoprotect the retinal strips with glycerol in 0.1 molar PB, prior to freeze-substitution. Prior to placing the frozen tissue into the flat embedding holders, cut a thin circle from a clear plastic sheet and place it on the bottom of each holder to allow easier removal of the polymerized specimen box when finished.Now, set the automatic sequence in the AFS. Fill the AFS with liquid nitrogen and place the flat embedding holders in the AFS. Fill them with 1.5%uranyl acetate in methanol and pre-cool them.To plunge-freeze the retinal strips in liquid propane at 184 degrees Celsius, use a fine brush to place the samples on small pieces of double-stick tape attached to the metal stubs on the end of the plunging rods. After that, wick off extra buffer using the brush. Plunge the rods into the liquid propane for about five seconds.Then, transfer them to the AFS using a small transport chamber that is filled with liquid nitrogen. After placing the frozen sample and instruments, forceps and scalpel, into the AFS, cool the instruments in the chamber for several minutes before touching the tissue. Or, cool them by placing the tips of the instruments for a few seconds into the small transport chamber filled with liquid nitrogen.After that, remove the sample and tape from the stub using a fine scalpel. Next, place two pieces of frozen sections in each of the seven wells in the flat embedding aluminium holder with 1.5%uranyl acetate in methanol. Keep them at 90 degrees Celsius for at least 32 hours in the AFS.Then, increase the temperature stepwise to 45 degrees Celsius in the automatic sequence. After that, wash the samples three times in pre-cooled methanol. Next, infiltrate the samples progressively with low-temperature embedding resins as an embedding medium.On the next day, change the resin again and adjust the level of resin to reach the top edge of the wells. Set up the UV light on the AFS and polymerize the samples with UV light in the AFS until the end of the automatic sequence. Then, remove the samples from the AFS.Typically, sample blocks still show some pinkness and color. Place the samples close to the fluorescent light in the chemical fume hood at room temperature overnight, or until they appear completely clear. In this step, cut 70 nonometer thick ultra-thin sections with an ultramicrotome, and collect them on the formvar carbon coated nickel grids.Wash the grids in distilled water once, followed by three washes of TBS. Then, incubate the grids in 20 microliters of 5%BSA in TBS for 30 minutes, and then in 20 microliters of a mixture containing goat anti-CTB and an antibody to one NMDAR sub-unit overnight at room temperature. After that, wash the grids three times with 20 microliters of TBS each time at ph 7.6.Subsequntly, wash the grids once with TBS at ph 8.2 for five minutes. Incubate the grids for two hours with 20 microliters of a mixture containing donkey anti-rabbit IGG coupled to 10 nanometer gold particles, and donkey anti-goat IGG coupled to 18 nanometer gold particles. After two hours, wash the grids in 20 microliters of TBS, at ph 7.6 three times, followed by a wash in the ultra-pure water and then air-dry the grids.Subsequently, counterstain the grids with 5%uranyl acetate in distilled water for eight minutes, followed by 0.3%lead citrate in distilled water for five minutes in the dark. For triple-labeling experiments, incubate the grids overnight at room temperature with 20 microliters of a mixture of anti-goat CTB, anti-mouse PSD-95, and anti-rabbit UN2A. Then, incubate the grids for two hours with 20 microliters of a mixture of IGGs coupled to 18, 10, and five nanometer gold particles.In this section, first set the scale bar. Then measure the length of the PSD of individual RGC dendrites with ImageJ software. Then, count the gold particles within 10 nanometers of the membrane based on an average thickness of seven to nine nanometers for the plasma membrane.Calculate the particle density as the number of gold particles per linear micrometer. Then, measure the distance between the center of each gold particle and the middle of the PSD for synaptic location, or the edge of the PSD, for extra-synaptic location. This image shows the double immunogold labeling of GluA2/3 and CTB.This is the pre-synaptic ribbon and the small gold particles are clustered in the PSD of the RGC processes. This image shows the double immunogold labeling of GluN2B and CTB. The small gold particles are on the extra-synaptic plasma membrane.And this image shows the double immunogold labeling of GluN2A and CTB. Similar to GluA2/3, small particles are clustered within the PSD. The triple immunogold labeling of GluN2A, PSD-95, and CTB is shown here.GluN2A gold particles and PSD-95 gold particles are co-localized within the the PSD on individual CTB-positive RGC dendrites. While attempting this procedure, it is important to remember to fix the tissue very gently, because some protein antigenicity, such as that of NMDA receptors decreases markedly with strong prolonged fixation. After watching this video, you should have a good understanding of how to detect and analyze membrane proteins with great precision at retinal ribbon synapses.

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JoVE Journal

Neuroscience

7.4K 조회수.  National Institutes of Health. The overall goal of this experiment is to develop a new approach to analyze membrane proteins at retinal ribbon synapses quantitatively. This method can help answer key questions in the retinal neurobiology field such as the precise location of proteins at synapses within the circuit. The main advantage of technique is that it can estimate the number, density, and rapidity of multiple proteins at retinal ribbon synapses.Demonstrating the procedure of freeze-substitution and the ultra-t...