Name: september 2015 - this month in jove: measuring greenhouse gases and herbicide resistance, bioengineering bone, and analyzing neuromuscular control with virtual reality
Uploaded: 2015-09-01T13:00:00
Duration: 3 min 34 s
Description: Watch this Scientific Journal Video about September 2015 - This Month in JoVE: Measuring Greenhouse Gases and Herbicide Resistance, Bioengineering Bone, and Analyzing Neuromuscular Control with Virtua

<h2 class="jove_title"><a href="https://www.jove.com/video/52906">Multifunctional Setup for Studying Human Motor Control Using Transcranial Magnetic Stimulation, Electromyography, Motion Capture, and Virtual Reality</a></h2>William J. Talkington, Bradley S. Pollard, Erienne V. Olesh, Valeriya GritsenkoDepartment of Human Performance and Applied Exercise Science, Division of Physical Therapy, West Virginia UniversityTranscranial magnetic stimulation, electromyography, and 3D motion capture are commonly used non-invasive techniques for investigating neuromuscular function in humans. In this paper, we describe a protocol that synchronously samples data generated by all three of these tools along with the unique addition of virtual reality stimulus presentation and feedback.<h2 class="jove_title"><a href="https://www.jove.com/video/52904">The Use of an Automated System (GreenFeed) to Monitor Enteric Methane and Carbon Dioxide Emissions from Ruminant Animals</a></h2>Alexander Hristov1, Joon Oh1, Fabio Giallongo1, Tyler Frederick1, Holley Weeks1, Patrick R Zimmerman2, Michael T. Harper1, Rada A Hristova3, R. Scott Zimmerman2, Antonio F. Branco41Department of Animal Science, Pennsylvania State University, 2C-Lock, Inc. Rapid City, SD, 3Color Productions, State College, PA, 4Departamento de Zootecnia, Universidade Estadual de Maring&#225;Accuracy and precision of the techniques used to measure methane emissions from ruminant animals are critically important for the success of greenhouse gas mitigation efforts. This manuscript describes the principles and operation of an automated system to monitor methane and carbon dioxide mass fluxes from the breath of ruminant animals.<h2 class="jove_title"><a href="https://www.jove.com/video/53236">Measuring Rates of Herbicide Metabolism in Dicot Weeds with an Excised Leaf Assay</a></h2>Rong Ma, Joshua J. Skelton, Dean E. RiechersDepartment of Crop Science, University of IllinoisThis manuscript describes how herbicide metabolism rates can be effectively quantified with excised leaves from a dicot weed, thereby reducing variability and removing any possible confounding effects of herbicide uptake or translocation typically observed in whole-plant assays.<h2 class="jove_title"><a href="https://www.jove.com/video/52947">Distinctive Capillary Action by Micro-channels in Bone-like Templates Can Enhance Recruitment of Cells for Restoration of Large Bony Defect</a></h2>Daniel S Oh1, Alia Koch1, Sidney B. Eisig1, Sahng Gyoon Kim2, Yoon Hyuk Kim3, Do-Gyoon Kim4, Jae Hyuck Shim51Oral and Maxillofacial Surgery, Columbia University, 2Endodontics, Columbia University, 3Mechanical Engineering, Kyung Hee University, South Korea, 4Orthodontics, The Ohio State University, 5Pathology, Weill Cornell Medical CollegeA step-by-step generic process to create a bone-like template with engineered micro-channels is presented. High absorption and retention capabilities of the template are demonstrated by capillary action via micro-channels.

september 2015 - this month in jove: measuring greenhouse gases and herbicide resistance, bioengineering bone, and analyzing neuromuscular control with virtual reality

Here's a look at what's coming up in the <a href="http://www.jove.com/archive/103">September 2015 issue</a> of <a href="http://www.jove.com/">JoVE: The Journal of Visualized Experiments</a>.
In <a href="http://www.jove.com/enviro">JoVE Environment</a>, we've had a pretty warm summer in the northern hemisphere, so we can't help but think about all the greenhouse gases in our atmosphere that keep our planet nice and warm. These days, livestock are a major source of greenhouse gas emissions, especially methane. Livestock contribute anywhere from 7 to 18% of global emissions-depending on who you ask. Naturally, climate scientists are interested in controlling enteric methane from livestock. This requires accurate and precise measurement techniques, so <a href="http://www.jove.com/video/52904/">Hristov et al.</a> present a method using the Automated Head-Chamber System (AHCS), which monitors methane (CH4) and carbon dioxide (CO2) mass fluxes from the breath of ruminant animals (e.g., cattle). This system produces repeatable and accurate emission results, and can help efforts to curb greenhouse gas emissions.
In <a href="http://www.jove.com/enviro">JoVE Environment</a>, we're also concerned about herbicide resistance in weeds, which poses a serious threat to food and fiber production. Plants can gain resistance to herbicides through genetic mutations or through enhanced activity of enzymes that metabolize and detoxify chemicals. In order to determine rates of herbicide metabolism in certain weeds, <a href="http://www.jove.com/video/53236/measuring-rates-herbicide-metabolism-dicot-weeds-with-an-excised-leaf">Ma et al.</a> developed an excised leaf assay, which allows them to take experiments from the greenhouse into the lab so they can perform radiolabeled herbicide experiments more efficiently. As more and more plants become resistant to herbicides, this method will be useful for investigating the metabolic basis of herbicide resistance.
In <a href="http://www.jove.com/bioengineering">JoVE Bioengineering</a>, one of the ultimate goals of tissue engineering is to regenerate large bone defects using synthetic scaffolds or templates. Most available scaffolds don't allow appreciable cell infiltration or distribution to achieve significant bone regeneration, so <a href="http://www.jove.com/video/52947/distinctive-capillary-action-micro-channels-bone-like-templates-can?status=a54953k">Oh et al.</a> have developed a highly porous bone-like template with micro-channels and nanopores. Cells can be seeded into the biogenic templates through capillary action, and grow to confluence within days. This concept can help advance the repair of large bone defects.
In <a href="http://www.jove.com/behavior">JoVE Behavior</a>, the human neuromuscular junction can be studied using a variety of noninvasive techniques, including electromyography (EMG), 3D motion capture, and transcranial magnetic stimulation. This month, <a href="http://www.jove.com/video/52947/distinctive-capillary-action-micro-channels-bone-like-templates-can">Talkington et al.</a> add the unique aspect of virtual reality to this test battery, and describe a customizable circuit that synchronizes data sampled from all of these techniques.
You've just had a sneak peek of the <a href="http://www.jove.com/archive/103">September 2015 issue</a> of <a href="http://www.jove.com/">JoVE</a>. Visit the website to see the full-length articles, plus many more, in <a href="http://www.jove.com/">JoVE: The Journal of Visualized Experiments</a>.

Watch this Scientific Journal Video about September 2015 - This Month in JoVE: Measuring Greenhouse Gases and Herbicide Resistance, Bioengineering Bone, and Analyzing Neuromuscular Control with Virtua

September 2015 - This Month in JoVE: Measuring Greenhouse Gases and Herbicide Resistance, Bioengineering Bone, and Analyzing Neuromuscular Control with Virtual Reality

Here's a look at what's coming up in the September 2015 issue of JoVE: The Journal of Visualized Experiments.
In JoVE Environment, we've had a pretty warm ...

september-2015-this-month-jove-measuring-greenhouse-gases-herbicide

Without Section

August 2012: This Month in JoVE

Traditional microscopy requires lens objectives to magnify specimens, and can involve numerous optical components like additional objectives, filters, and mirrors to refract and direct light to optical sensors. The August 2012 issue of JoVE (Journal of Visualized Experiments) is marked by the third publication from the Ozcan Lab (University of California, Los Angeles) on their lens free lens-free "on-chip" microscopy platform, which they have pioneered.
Back in 2009, the Ozcan lab published their first article, which demonstrated the use of a lens-free imaging platform that could image cells within whole blood. This imaging technique involves placing a sample directly on an optoelectric sensor array, like the CCD or CMOS chips found in the standard camcorder. Then, LED illumination from above the sample casts shadows on the chip, which are recorded as digital holograms that can be subjected to image processing. Not only does this lensless imaging system allow for an extremely large field of view (FOV of 0.6-8 cm2), the lack of bulky optical components makes it excellent for microfluidic applications. The Ozcan group demonstrates this in their follow-up 2011 JoVE article, in which fluorescently labeled white blood cells are imaged within a microfluidic chip.
This August in JoVE, the Ozcan group demonstrates further advancements to their lens-free microscopy platform by applying it to tomographic imaging of the nematode, C. elegans. By changing the angle of illumination, using a motorized rotation stage, the Ozcan group shows how multiple holographic slices may be generated for a sample-which, following processing, can be combined into tomograms. The Ozcan group confirms that their 3D reconstruction of the worm is successful by citing that the pharyngeal tube, a 5-micron-thick structure, is only visible in a single slice and in a 3D reconstructed cross section.
The compact and inexpensive nature of the lens-free imaging systems - designed and assembled by the Ozcan group - make them well suited for point-of-care diagnostic applications, or even cell phone based microscopy that can be performed in the field.
At the Ernest Gallo Clinic and Research Center at University of California, San Francisco JoVE learns how to visualize morphological changes in single cells using three-dimensional fluorescence microscopy and computer analysis. In this procedure, cells are given agonist, antagonist plus agonist, or no treatment, and prepared for immunofluorescence microscopy. Three-dimensional images are acquired with the help of a two-photon laser system, and the fluorescence data are processed on the computer using Imaris and Matlab.
To demonstrate the power of this technique, our authors quantify single-cell phenotypic changes in transfected HEK293 cells. Three-dimensional morphometric analysis shows dramatic changes in cells treated with agonist. These changes are not always apparent when using conventional 2D analysis. This technique allows morphological changes in single cells to be quantified and characterized in response to pharmacologic stimuli, offering a powerful new assessment tool to the arsenal of drug discovery research.
This month, in JoVE Applied Physics, we travel to South Carolina to visit the School of Materials Science and Engineering at Clemson University. Here, researchers show us how to construct lithium batteries for laboratory research.
The basic components of a lithium coin cell are the working electrode, the lithium electrolyte, and a lithium foil counter electrode. The different components of the coin cell are carefully assembled and sealed with a crimping machine. The finished coin cell can then be characterized in a battery tester. Using their homemade coin cells, our researchers can experiment with using different materials to make the cathodes of lithium coin cells.
This month in JoVE Immunology and Infection, we head to Basel, Switzerland to witness two techniques for diagnosing helminth infections. We also see how investigators perform the shuttle run test in children, in order to assess the effects of these infections on physical fitness.
Helminths are parasitic worms that can live inside humans and animals. Many species infect the intestinal tract, and may be transmitted through soil. Our authors demonstrate the Kato-Katz technique, which is used for diagnosing several common soil-transmitted helminths. They also demonstrate the Baermann technique, which uses light to stimulate the migration of certain types of phototactic helminths out of sample preparations. The various types of helminth species can subsequently be determined based on morphology.
Our authors then demonstrate how to set up and perform a 20-meter shuttle run test for children, and to measure the impact of helminth infections on physical fitness. This method can help determine the true burden of soil-transmitted helminth infections on overall health.
This brief summary highlights but a few notable video-articles that will be released in August. We'll also feature articles that demonstrate how to express genes in the midbrain of the chick embryo, study neutrophil transmigration in parallel flow chambers lined with endothelial cells, and precisely measure proteolytic degradation of the extracellular matrix.

Traditional microscopy requires lens objectives to magnify specimens, and can involve numerous optical components like additional objectives, filters, and mirrors to refract and direct light to optical sensors. The August 2012 issue of JoVE (Journal of Visualized Experiments) is marked by the third publication from the Ozcan Lab (University of California, Los Angeles) on their lens-free "on-chip" microscopy platform, which they have pioneered.

Traditional microscopy requires lens objectives to magnify specimens, and can involve numerous optical components like additional objectives, filters, and ...

Research

JoVE Journal

Biology

2012: A Year In Review

Here's a look at some of the milestones and highlights of the year 2012 in Journal of Visualized Experiments (JoVE).
At the start of 2012, JoVE reached a major milestone by publishing our 1500th article. In this publication, in JoVE Bioengineering, Yu et al. described a method for analyzing the free radical composition of cigarette smoke. This method simulated cigarette puffing with a single-port smoking device, and combined it with electron spin resonance (ESR) spectroscopy to measure the degree to which antioxidant compounds can scavenge free radicals in cigarette smoke. A possible outcome of this research is the creation of less harmful cigarettes.
JoVE Bioengineering also contained the most-viewed article of 2012. Owczarczak et al. described a method for hacking a standard inkjet printer, loading ink cartridges with a cell-suspension "bioink," and printing lines of live cells onto glass slides. The thermal inkjet printing process creates temporary pores in the cell membrane, visualized by the incorporation of fluorescently labeled actin monomers. This concept, called "bioprinting," has many potential applications in cell and tissue engineering.
Also in 2012, JoVE Bioengineering featured a protocol by Hsia et al. for isolating and purifying spider silk protein, spinning it into fibers, and assessing the fiber strength. This protocol for laboratory-scale production of spider silk, which is stronger than tensile steel, can potentially be extended to large-scale manufacturing.
In JoVE Clinical and Translational Medicine, we featured a number of articles related to stroke, one of which. In one article, M&ouml;bius-Winkler et al. demonstrated placement of the WATCHMAN left atrial appendage occlusion device from Boston Scientific. This device is designed to prevent strokes by trapping clots within the left atrial appendage of the heart before they exit. Our authors demonstrated how to insert the guide wire through the femoral artery into the heart, advance the device into the left atrium, and deploy the device in the left atrial appendage.
Another article focused on stroke, Hamel et al. described the use of a driving simulator to study how patients compensate for visual field defects following stroke. By analyzing the compensatory gaze behavior of patients as they navigated through virtual driving courses with varying degrees of complexity, our authors see great potential for the use of driving simulators in stroke rehabilitation.
In JoVE Immunology and Infection, we published an article by Keyel et al. describing the real-time kinetics of immune cell responses to bacterial toxins using live cell microscopy. Combined with high-speed 3D confocal microscopy, this technique can also visualize the cellular repair response.
Also in JoVE Immunology and Infection, we featured an article by Yap et al. describing methods for diagnosing helminth infections in children. Helminths are parasitic worms that can infect the intestinal tract of humans and animals, and may be distinguished based on their morphology. The same article demonstrated how to measure the impact of helminth infections on physical fitness in children, which is a measure of overall health.
In JoVE Neuroscience, we featured a method by Hoffmann et al., who used tiny headphones to alter the auditory feedback in songbirds, and analyzed the computational and neurophysiological basis of vocal learning in birds when they adjust their singing in response to altered acoustic signals.
Also in JoVE Neuroscience, we moved from birds to bees with a method that assesses associative and non-associative tactile learning in honeybees. This method, by Mujagi&#263; et al., allowed bees to scan different metal surfaces with their antennae, then conditioned them to expect sugar water when their antennae touched particular surfaces, and analyzed the corresponding changes in antennal movement.
In 2012, we launched a brand-new section: JoVE Applied Physics, which features articles on subjects ranging from plasma physics to material science. The Applied Physics section also contained JoVE's 2000th video article, filmed in a synchrotron radiation facility, where Borisenko et al. showed how to determine the electronic structure of complex materials using angle-resolved photoemission spectroscopy.
In the JoVE General section, we published an article by Artioli et al. demonstrating the use of a portable gas analyzer to measure oxygen consumption during complex exercise - such as judo. By analyzing oxygen consumption and collecting blood for measuring plasma lactate concentration, this method can determine the relative contributions of different energy systems to specific aspects of complex exercise.
Finally, JoVE followed Dolhi et al. to a permanently ice-covered saline lake in Antarctica. There, scientists drilled through the ice to study single-celled microorganisms called protists that live in the harsh conditions of Antarctica.
This Year in Review was just a brief glimpse of a few of over 600 video articles that JoVE offered in 2012. Browse the JoVE archives to see thousands of other videos, and stay tuned for what's coming up this year in JoVE: The Journal of Visualized Experiments.

Here's a look at some of the milestones and highlights of the year 2012 in Journal of Visualized Experiments (JoVE).

 
 
Here's a look at some of the milestones and highlights of the year 2012 in Journal of Visualized Experiments (JoVE).
At the start of 2012, JoVE ...