This work was supported by a Project for Private Universities: matching fund subsidy from the Ministry of Education, Culture, Sports, Science and Technology (MEXT) of Japan (T.I.) and Grants-in-Aid for Scientific Research (C) from MEXT (S.T. and K.N).

The protocols and use of experimental animals were approved by the institutional animal care and use committees at the University of Yamanashi and Waseda University. Animal care was performed in accordance with institutional guidelines.
1. CPEC Preparation
<ol>
	<li>Prepare the following apparatuses and materials: a stereo microscope, preferably capable of transmitting illumination from the bottom; a pair of watchmaker forceps (Dumont #3 or #4), flame-sterilized, straight operating scissors, flame-sterilized; two sterile 10 cm plastic dishes containing 20 ml ice-cold Leibovitz L-15 medium; 35 mm glass-bottom dishes containing 2 ml RT Leibovitz L-15 medium; a 100 ml beaker containing 70% ethanol; neonatal mouse pups.</li>
	<li>Briefly immerse a neonatal mouse in 70% ethanol and euthanize quickly by decapitation using the operating scissors.</li>
	<li>Place the head immediately in ice-cold Leibovitz L-15 medium in the sterile 10 cm dish.</li>
	<li>Remove the skin from the calvaria using the pair of watchmaker forceps, cut open the skull to expose the brain, and then cut the cranial nerves to isolate the whole brain.</li>
	<li>Transfer the brain to a new dish containing ice-cold Leibovitz L-15 medium and observe under the stereo microscope, making sure that the brain is completely immersed in the medium.</li>
	<li>Set the dorsal aspect of the brain facing up, and orient the brain so that the olfactory bulbs reside at the three o&#8217;clock position (for right-handed persons). Hold the brain gently with the forceps in the left hand.</li>
	<li>Using the fine dissection forceps (Dumont #3 or #4) in the right hand, cut the corpus callosum and underneath the parenchyma connecting the cerebral hemispheres, along the longitudinal fissure of the cerebrum.</li>
	<li>Gently push the cerebral hemispheres away to the lateral sides and expose the transverse cerebral fissure.</li>
	<li>Separate the hemispheres by pinching out the parenchyma between the hemisphere and thalamus.</li>
	<li>Gently pull out the lateral ventricular choroid plexus that is attached to the lateral side of the hippocampus by the lamina affixa.</li>
	<li>Transfer the isolated choroid plexus to the 35 mm glass-bottom dish containing fresh Leibovitz L-15 medium, and overlay a weight (Materials List) gently to hold the tissue in place.</li>
</ol>
2. Live Imaging of CPEC Cilia
<ol>
	<li>Confirm proper ultraviolet (UV) and inferred (IR) cut filter(s) to block light shorter than 400 nm and longer than 700 nm, and that neutral density (ND) filters (25% and 6%) are inserted in the light path of the inverted microscope.</li>
	<li>Adjust the focus of the objective lens roughly by eye, and then adjust the condenser so that the center and focus to conform to the K&#246;hler illumination. Insert an appropriate differential interference contrast (DIC) prism, a DIC element, as well as analyzer and polarizer elements in the light path to conform to the DIC optics.</li>
	<li>Adjust the contrast of view by the DIC prism position so that the structure of the tissue surface is most recognizable. If all cilia of the target cells are motile, a clear view of motile cilia cannot be obtained by eye because of their movement.</li>
	<li>Change the light path to the video camera, and remove the ND filters to increase the light power.</li>
	<li>Use the camera in focusing mode to adjust the field of view and focus. During focusing, in which video images are displayed at real-time on the monitor, a clear view of motile cilia is not available.</li>
	<li>Use the camera at 200 Hz with an exposure time of 0.1 msec for the desired period (seconds to minutes). After acquisition of the image stack, single frames will display clear ciliary structures. If ciliary edges are blurred, increase the frame rate or use a shorter exposure time.</li>
	<li>Record the motion of CPEC cilia within 25&#8211;60 min after euthanasia in Leibovitz L-15 medium.</li>
</ol>
3. Analysis of Ciliary Motion
<ol>
	<li>Manually track beating patterns of each cilium on the computer monitor. Mark ciliary tip positions in each frame with the mouse pointer, which are assembled for trajectory information of each cilium. Either analyze the trajectory information using the same software or export to other more general applications for further analysis. The efficiency of this analysis step is described in the Discussion.</li>
	<li>Classify the trajectories into two modes of motion, back-and-forth or rotational, by eye.</li>
	<li>Calculate the ciliary beating frequency (CBF) using the following formula: [CBF = (number of frames per second)/(average number of frames for a single beat)]14, which can be obtained from a ciliary tip motion diagram (Figure 3). Repeat this calculation for multiple ciliary beating cycles, because other cilia on the same cell can interfere with the motion of each cilium, resulting in irregularity.</li>
	<li>To analyze the angular uniformity of the ciliary beating axes within a single cell, define the beating angle&#160;&#952; for each trajectory (Figure 4). For back-and-forth trajectories, fit the positions of the cilia tip to a straight line, and define &#952; as the angle the line makes with x-axis. For rotational trajectories, fit the positions to an ellipse, and define &#952; as the angle the major axis of the ellipse makes with x-axis. Details of the fitting are described in the Representative Results section.</li>
	<li>For quantitative description of each trajectory, calculate generalized aspect ratio AR. Briefly, rotate the trajectory by -&#952; and define AR as the ratio between the widths of the distribution along x- and y-axes (Figure 4B). Details are shown in the Representative Results section, and the interpretation, significance, and the limitation of the parameter are described in the Discussion.</li>
</ol>
4. Sample Preparation for SEM
Note: SEM is an important method to evaluate the status of cilia on CPECs in a comprehensive manner. To prepare specimens for SEM, a standard procedure reported previously15 is employed with slight modifications.
<ol>
	<li>Before dissecting the tissue from the brain, prepare the fixative in a 5 ml glass vial with a polyethylene cap. The fixative consists of 2% paraformaldehyde, 2.5% glutaraldehyde (half Karnovsky&#8217;s solution16) in 0.1 M phosphate buffer, pH 7.4.</li>
	<li>Dissect out the tissue from the brain as described in step 1.</li>
	<li>Briefly rinse the isolated tissue with Hank&#8217;s balanced salt solution (HBSS) in a new dish and then fix the tissue in the fixative in the glass vial for 1 hr at room temperature. Use disposable transfer pipettes and handle the specimens gently. After rinsing in HBSS, the tissue becomes sticky.
	<ol>
		<li>To transfer the specimens into the fixative solution, slowly expel a small amount of solution containing the tissue from the transfer pipette as a droplet and add to the fixative.</li>
	</ol>
	</li>
	<li>After fixation, discard the fixative and rinse the tissue with phosphate buffer three times.</li>
	<li>Immerse the tissue in a 10% sucrose solution to wash out the remaining aldehydes. To ensure complete elimination of aldehydes, immerse the samples in the solution for 10 min and then repeat twice with fresh 10% sucrose. This step is important to achieve proper post-fixation in subsequent steps.</li>
	<li>Immerse the tissue in a solution of 1% osmium tetroxide in phosphate buffer for 30 min and then place on ice for post-fixation. Judge the degree of osmification by the sample color: when aldehydes are completely removed, the sample is black.</li>
	<li>Wash the post-fixed tissue samples extensively with double distilled water several times.</li>
	<li>Dehydrate the samples by immersion in graded concentrations of ethanol, usually 65%, 75%, 85%, 95%, 99%, and 100%, for 10 min each. Obtain anhydrous ethanol by placing molecular sieves into 99.5% ethanol from a newly purchased bottle. Repeat dehydration with anhydrous ethanol three times.</li>
	<li>Place the dehydrated samples into isoamyl acetate, a substitution reagent for critical point drying, for 10 min. Repeat this step twice. This reagent evaporates rapidly and the sample can become dry, resulting in destruction by surface tension. Therefore, do not dry the sample completely.</li>
	<li>After the final exchange of isoamyl acetate, remove most of the solvent, immediately wrap the open glass vial with aluminum foil, and place the vial on dry ice. Using a needle or fine forceps, make several holes in the foil covering the mouth of the vial, so that liquid carbon dioxide flows easily into the vial in the critical point dryer. Proceed to the next step as quickly as possible.</li>
	<li>In this step, minimize the carryover of isoamyl acetate into the chamber of the dryer, but do not let the sample dry out completely before critical point drying. In addition, do not leave the sample on dry ice for an unnecessarily long time to avoid the formation of frost on the vial.</li>
	<li>Transfer the foil-wrapped glass vials containing the tissue samples into the critical point dryer that ensures the surface structure of the tissue remains intact while removing water contained in the tissue. Detailed information on operating the critical point dryer can be obtained from the manufacturer&#8217;s instructions.</li>
	<li>Handle the samples carefully using a toothpick to minimize mechanical damage. The resulting dried tissue samples are fragile. Mount the samples on metal stubs and coat with gold-palladium using an ion sputter.</li>
</ol>
5. Observation by SEM
<ol>
	<li>Observe by SEM and record images with a digital camera equipped to scanning electron microscope.</li>
	<li>Transfer digital image data to a PC for analysis.</li>
</ol>

<ol>
	<li>Nonami, Y., Narita, K., Nakamura, H., Inoue, T., Takeda, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Developmental+changes+in+ciliary+motility+on+choroid+plexus+epithelial+cells+during+the+perinatal+period.">Developmental changes in ciliary motility on choroid plexus epithelial cells during the perinatal period.</a> Cytoskeleton. 70 (12), 797-803 (2013).</li><li>Bisgrove, B. W., Yost, H. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+roles+of+cilia+in+developmental+disorders+and+disease.">The roles of cilia in developmental disorders and disease.</a> Development. 133 (21), 4131-4143 (2006).</li><li>Fliegauf, M., Benzing, T., Omran, H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=When+cilia+go+bad:+cilia+defects+and+ciliopathies.">When cilia go bad: cilia defects and ciliopathies.</a> Nature Reviews. Molecular Cell Biology. 8 (11), 880-893 (2007).</li><li>Oh, E. C., Katsanis, N. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cilia+in+vertebrate+development+and+disease.">Cilia in vertebrate development and disease.</a> Development. 139 (3), 443-448 (2012).</li><li>Shah, A. S., Ben-Shahar, Y., Moninger, T. O., Kline, J. N., Welsh, M. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Motile+cilia+of+human+airway+epithelia+are+chemosensory.">Motile cilia of human airway epithelia are chemosensory.</a> Science(New York, N.Y). 325 (5944), 1131-1134 (2009).</li><li>Kiprilov, E. N., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Human+embryonic+stem+cells+in+culture+possess+primary+cilia+with+hedgehog+signaling+machinery).">Human embryonic stem cells in culture possess primary cilia with hedgehog signaling machinery).</a> The Journal of Cell Biology. 180 (5), 897-904 (2008).</li><li>Hirokawa, N., Tanaka, Y., Okada, Y., Takeda, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Nodal+flow+and+the+generation+of+left-right+asymmetry.">Nodal flow and the generation of left-right asymmetry.</a> Cell. 125 (1), 33-45 (2006).</li><li>Narita, K., Kozuka-Hata, H., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Proteomic+analysis+of+multiple+primary+cilia+reveals+a+novel+mode+of+ciliary+development+in+mammals.">Proteomic analysis of multiple primary cilia reveals a novel mode of ciliary development in mammals.</a> Biology Open. 1 (8), 815-825 (2012).</li><li>Takeda, S., Narita, K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Structure+and+function+of+vertebrate+cilia,+towards+a+new+taxonomy.">Structure and function of vertebrate cilia, towards a new taxonomy.</a> Differentiation; Research in Biological Diversity. 83 (2), S4-S11 (2012).</li><li>Ikegami, K., Sato, S., Nakamura, K., Ostrowski, L. E., Setou, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Tubulin+polyglutamylation+is+essential+for+airway+ciliary+function+through+the+regulation+of+beating+asymmetry.">Tubulin polyglutamylation is essential for airway ciliary function through the regulation of beating asymmetry.</a> Proceedings of the National Academy of Sciences of the United States of America. 107 (23), 10490-10495 (2010).</li><li>Foster, K. W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Analysis+of+the+ciliary/flagellar+beating+of+Chlamydomonas.">Analysis of the ciliary/flagellar beating of Chlamydomonas.</a> Methods in Cell Biology. 91, 173-239 (2009).</li><li>Lechtreck, K. -. F., Sanderson, M. J., Witman, G. B. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=High-speed+digital+imaging+of+ependymal+cilia+in+the+murine+brain.">High-speed digital imaging of ependymal cilia in the murine brain.</a> Methods in Cell Biology. 91, 255-264 (2009).</li><li>Okada, Y., Hirokawa, N. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Observation+of+nodal+cilia+movement+and+measurement+of+nodal+flow.">Observation of nodal cilia movement and measurement of nodal flow.</a> Methods in Cell Biology. 91, 265-285 (2009).</li><li>Chilvers, M. A., Rutman, A., O&#8217;Callaghan, C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Ciliary+beat+pattern+is+associated+with+specific+ultrastructural+defects+in+primary+ciliary+dyskinesia.">Ciliary beat pattern is associated with specific ultrastructural defects in primary ciliary dyskinesia.</a> The Journal of Allergy and Clinical Immunology. 112 (3), 518-524 (2003).</li><li>Takeda, S., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Left-right+asymmetry+and+kinesin+superfamily+protein+KIF3A:+new+insights+in+determination+of+laterality+and+mesoderm+induction+by+kif3A-/-+mice+analysis.">Left-right asymmetry and kinesin superfamily protein KIF3A: new insights in determination of laterality and mesoderm induction by kif3A-/- mice analysis.</a> The Journal of Cell Biology. 145 (4), 825-836 (1999).</li><li>Karnovsky, M. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+formaldehyde-glutaraldehyde+fixative+of+high+osmolarity+for+use+in+electron+microscopy.">A formaldehyde-glutaraldehyde fixative of high osmolarity for use in electron microscopy.</a> The Journal of Cell Biology. 27, 137-138A (1965).</li></ol>

The authors declare that they have no competing financial interests. This paper aims at reporting detailed methodology to observe the motility of cilia in isolated choroid plexus tissues. Scientific novelties have been reported in previous studies1,8.

Perspectives of this method
Although the technique described here does not provide a more detailed analysis of cilia than previously published methods, the significance of this technique resides in the simplicity of the system and cost effectiveness, which can be easily applied to screening any kind of ciliary motility ex vivo. In particular, TI Workbench provides a simple and user-friendly interface that enables researchers to observe and analyze ciliary motility more easily. Effecti...

Cilia are hair-like projections on the surface of most vertebrate cells, which have attracted attention by medical researchers because of a class of diseases termed ciliopathies2&#8211;4. Despite the ubiquitous expression of the organelle, a wide variety of ciliary functions have been reported, including motility and biosensing. For example, motile cilia on the mucoepithelial surface transport mucus5 and epithelial debris to the outlet of tracts, thereby preventing disease by clearing the surface of epithelia. Moreover, during early developmental periods and embryonic stages, cilia regulate the proliferation of stem cells6, and are involved in the determination of left&#8211;right asymmetry of the vertebrate body7. 
Choroid plexus epithelial cells (CPECs) are derivatives of neuroepithelial cells that cover the surface of the choroid plexus tissue in the brain, which play important roles in maintaining homeostasis of the intracranial environment by production of cerebrospinal fluid (CSF). It has been previously demonstrated that CPECs have multiple non-motile cilia that regulate the production of CSF through G-protein-coupled receptors that are specifically concentrated on the cilia8. Although these cilia had been regarded as quiescent non-motile cilia, it was discovered that some CPEC cilia exhibit transient motility during the neonatal period1. This finding was quite important because it revealed that so-called non-motile cilia are not necessarily immotile from the beginning of development and might display transient motility during specific time windows, possibly in response to specific physiological demands and functions9. To precisely describe the motile nature of CPEC cilia, it is necessary to develop an ex vivo observation system that encompasses analysis of the kinetic profiles unique to CPEC cilia. 
With respect to motility, although several technical reports have described observations of the motile cilia of the tracheal epithelium5,10, motile single-cell flagella11, so-called conventional motile cilia12, and nodal cilia13, detailed analytical methods applicable to relatively undulated structures such as the choroid plexus have not been well documented so far. Moreover, a high time resolution is required to analyze the ciliary movement of CPECs, in which expensive high-speed cameras are indispensable. To circumvent this necessity and simplify monitoring the ciliary motility of various cell types, a low cost, high-speed camera has been introduced, and an easily accessible and convenient method to record the motility of motile cilia, especially to describe the speed and pattern of motion of each cilium, has been developed1. Moreover, original image analysis software &#8220;TI Workbench&#8221; has been used here to facilitate detailed analysis of motility. Collectively, this method provides a new concise strategy to analyze ciliary motion together with correlative scanning electron microscopy (SEM), which can be adopted in a wide range of cilium research.

<table><tbody><tr><td colspan="4">&lt;strong&gt;Required reagents&lt;/strong&gt;</td></tr><tr><td colspan="4">&lt;strong&gt;for live cell imaging&lt;/strong&gt;</td></tr><tr><td>ethanol</td><td>Wako Chemicals</td><td>057-00456</td><td></td></tr><tr><td>Leibovitz L-15 medium</td><td>Life Technologies</td><td>11415-064</td><td></td></tr><tr><td colspan="4">&lt;strong&gt;for SEM preparation&lt;/strong&gt;</td></tr><tr><td>ethanol</td><td>Wako Chemicals</td><td>057-00456</td><td></td></tr><tr><td>Hank&#039;s balanced salt solution</td><td>Life Technologies</td><td>14170112</td><td></td></tr><tr><td>paraformaldehyde&amp;nbsp;</td><td>Merck</td><td>1040051000</td><td></td></tr><tr><td>glutaraldehyde&amp;nbsp;</td><td>Nacalai tesque</td><td>17003-05</td><td></td></tr><tr><td>isoamyl acetate</td><td>Nacalai tesque</td><td>02710-95</td><td></td></tr><tr><td>Molecular Sieves 4A 1/8&amp;nbsp;</td><td>Wako Chemicals</td><td>130-08655</td><td>for preparation of anhydrous ethanol</td></tr><tr><td>phosphate buffer saline (PBS)</td><td>Sigma-Aldrich</td><td>D1408</td><td></td></tr><tr><td>phosphate buffer, 0.1 M</td><td></td><td></td><td>To make 100 ml, mix 19.0 ml of 0.1&amp;nbsp;M NaH&lt;sub&gt;2&lt;/sub&gt;PO&lt;sub&gt;4&lt;/sub&gt; and 81.0 ml of 0.1&amp;nbsp;M Na&lt;sub&gt;2&lt;/sub&gt;HPO&lt;sub&gt;4&lt;/sub&gt;</td></tr><tr><td>monosodium phosphate (dihydrate)</td><td>Nacalai tesque</td><td>31718-15</td><td></td></tr><tr><td>disodium phosphate (anhydrous)</td><td>Nacalai tesque</td><td>31801-05</td><td></td></tr><tr><td>suclose</td><td>Nacalai tesque</td><td>30406-25</td><td></td></tr><tr><td>osmium tetroxide</td><td>Nisshin EM</td><td>300</td><td></td></tr><tr><td>dry ice</td><td></td><td></td><td></td></tr><tr><td colspan="4">[header]</td></tr><tr><td colspan="4">&lt;strong&gt;Tools and materials for dissection&lt;/strong&gt;</td></tr><tr><td colspan="4">&lt;strong&gt;for both live imaging and SEM preparation&lt;/strong&gt;</td></tr><tr><td>stereo microscope</td><td>Olympus</td><td>SZX7</td><td></td></tr><tr><td>flat paper towel</td><td></td><td></td><td></td></tr><tr><td>&amp;Phi;10 cm plastic dish</td><td></td><td></td><td></td></tr><tr><td>100 ml beaker</td><td></td><td></td><td></td></tr><tr><td>straight operating scissors</td><td>Sansyo</td><td>S-2B</td><td></td></tr><tr><td>watchmaker forceps</td><td>Dumont</td><td>No.DU-3 or -4, INOX</td><td></td></tr><tr><td colspan="4">&lt;strong&gt;for live cell imaging&lt;/strong&gt;</td></tr><tr><td>glass bottom dish</td><td>Matsunami Glass</td><td>D110300</td><td></td></tr><tr><td colspan="4">&lt;strong&gt;for SEM preparation&lt;/strong&gt;</td></tr><tr><td>alminum foil</td><td></td><td></td><td></td></tr><tr><td>5 ml glass vial with a polyethylene cap</td><td>Nichiden Rika-Glass</td><td>PS-5A</td><td></td></tr><tr><td>transfer pipette</td><td>Samco Scientific</td><td>SM251-1S</td><td>for specimen tranfer</td></tr><tr><td>toothpick</td><td></td><td></td><td>for specimen transfer</td></tr><tr><td>ion sputter with gold-palladium</td><td>Hitachi</td><td>E-1030</td><td></td></tr><tr><td>critical point dryer</td><td>Hitachi</td><td>HCP-2</td><td></td></tr><tr><td colspan="4">[header]</td></tr><tr><td colspan="4">&lt;strong&gt;Microscopic equipment and materials&lt;/strong&gt;</td></tr><tr><td colspan="4">&lt;strong&gt;for live cell imaging&lt;/strong&gt;</td></tr><tr><td>inverted microscope</td><td>Olympus</td><td>IX81</td><td></td></tr><tr><td>100 W mercury lump housing and power supply</td><td>Olympus</td><td>U-ULH and BH2-RFL-T3</td><td></td></tr><tr><td>100 W mercury lamp</td><td>Ushio</td><td>USH103D</td><td></td></tr><tr><td>DIC condenser, n.a. 0.55</td><td>Olympus</td><td>IX-LWUCD</td><td></td></tr><tr><td>electrrical shutter</td><td>Vincent Associates</td><td>VS35S22M1R3-24 and VMM-D1</td><td>manual shutter can be used.</td></tr><tr><td>band-pass filter (400-700&amp;nbsp;nm, &amp;Phi;45&amp;nbsp;mm)</td><td>Koshin Kagaku</td><td>C10-110621-1</td><td></td></tr><tr><td>ND filter (&amp;Phi;45 mm)</td><td>Olympus</td><td>45ND6, 45ND25</td><td>combination of 25% and 6% ND filters are used</td></tr><tr><td>objective lens (water immersion) with DIC element</td><td>Olympus</td><td>UApo 40XW/340, n.a., 1.15 with IX-DPAO40</td><td></td></tr><tr><td>high-speed video camera</td><td>Allied Vision Technologies</td><td>GE680</td><td>&amp;#8805;200 Hz frame rate and 1 msec expose time</td></tr><tr><td>image acquisition / analysis software</td><td>in-hous software</td><td>TI Workbench</td><td>capable of acquisition at high frame rates.</td></tr><tr><td>PC for camera control / analysis</td><td>Apple</td><td>Mac Pro</td><td></td></tr><tr><td>vibration isolation table</td><td>Meiritsu Seiki</td><td>AD0806</td><td></td></tr><tr><td>weight for tissue</td><td>Warner Instruments</td><td>slice anchor kits</td><td>It can be made with nylon mesh glued to a U-shape squashed &amp;Phi;0.5&amp;nbsp;mm platinum wire.</td></tr><tr><td>cover glass (alternative weight for tissue)</td><td>Matsunami</td><td>made-to-order</td><td>A cover glass can be used as a tissue weight.</td></tr><tr><td colspan="4">&lt;strong&gt;for SEM&lt;/strong&gt;</td></tr><tr><td>inverted microscope</td><td>Olympus</td><td>IX81</td><td></td></tr><tr><td>scanning electron microscope</td><td>JEOL</td><td>JSM-6510</td><td></td></tr></tbody></table>

observation of the ciliary movement of choroid plexus epithelial cells ex vivo

The choroid plexus is located in the ventricular wall of the brain, the main function of which is believed to be production of cerebrospinal fluid. Choroid plexus epithelial cells (CPECs) covering the surface of choroid plexus tissue harbor multiple unique cilia, but most of the functions of these cilia remain to be investigated. To uncover the function of CPEC cilia with particular reference to their motility, an ex vivo observation system was developed to monitor ciliary motility during embryonic, perinatal and postnatal periods. The choroid plexus was dissected out of the brain ventricle and observed under a video-enhanced contrast microscope equipped with differential interference contrast optics. Under this condition, a simple and quantitative method was developed to analyze the motile profiles of CPEC cilia for several hours ex vivo. Next, the morphological changes of cilia during development were observed by scanning electron microscopy to elucidate the relationship between the morphological maturity of cilia and motility. Interestingly, this method could delineate changes in the number and length of cilia, which peaked at postnatal day (P) 2, while the beating frequency reached a maximum at P10, followed by abrupt cessation at P14. These techniques will enable elucidation of the functions of cilia in various tissues. While related techniques have been published in a previous report1, the current study focuses on detailed techniques to observe the motility and morphology of CPEC cilia ex vivo.

An overview of the workflow is shown in Figure 1, including images of the devices.
Live motion observations of CPECs
Movie 1 shows a movie of CPECs isolated from a perinatal mouse, and Movie 2 shows an expanded view of the images in Movie 1. It should be noted that individual ciliary tips are less clear in still images compared with those in movies. Figure 2 shows tracking of the mo...

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Observation of the Ciliary Movement of Choroid Plexus Epithelial Cells Ex Vivo

In this study, a detailed light microscopic technique was optimized for real-time observation and analysis of the motion of CPEC cilia ex vivo together with an electron microscopic method for ultrastructural analysis.

Observation of the Ciliary Movement of Choroid Plexus Epithelial Cells Ex Vivo

The choroid plexus is located in the ventricular wall of the brain, the main function of which is believed to be production of cerebrospinal fluid. ...

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12.1K Views.  Waseda University. In this study, a detailed light microscopic technique was optimized for real-time observation and analysis of the motion of CPEC cilia ex vivo together with an electron microscopic method for ultrastructural analysis.

Video: Observation of the Ciliary Movement of Choroid Plexus Epithelial Cells Ex Vivo

Culturing of Retinal Pigment Epithelial Cells on an Ex Vivo Model of Aged Human Bruch's Membrane

Aside from vitamins and antioxidants recommended by the Age-Related Eye Disease Study, there is no effective therapy for &#34;dry,&#34;&#160;or atrophic age-related macular degeneration (AMD) which represents 90% of the cases. Therapies are needed to slow or retard the development of geographic atrophy (GA), and understanding Bruch&#39;s membrane pathology is part of this process. Alterations in human Bruch&#39;s membrane precede the progression of AMD by contributing to the damage of retinal pigment epithelial (RPE) cells. Given the lack of sufficient animal models to study AMD, ex vivo models of aged human Bruch&#39;s membrane serve as a useful tool to study the behavior of RPE cells from immortalized and primary cell lines as well as RPE lines derived from induced pluripotent stem cells (iPSCs). Here, we present a detailed method that allows one to determine the effects of RPE cell behavior seeded on harvested human Bruch&#39;s membrane explants from human donors, including attachment, apoptosis and proliferation, ability to phagocytize photoreceptor outer segments, establishment of polarity, and gene expression. This assay provides an ex vivo model of aged Bruch&#39;s membrane to assess the functional characteristics of RPE cells when seeded on aged/compromised extracellular matrix.

Culturing of Retinal Pigment Epithelial Cells on an Ex Vivo Model of Aged Human Bruch's Membrane

The goal of this protocol is to demonstrate the culturing of retinal pigment epithelial (RPE) cells on aged and/or diseased human Bruch&#39;s membrane. This method is suitable to study RPE cell behavior on a compromised extracellular matrix.

Aside from vitamins and antioxidants recommended by the Age-Related Eye Disease Study, there is no effective therapy for &#34;dry,&#34;&#160;or atrophic ...

Developmental Biology

Live Imaging of the Ependymal Cilia in the Lateral Ventricles of the Mouse Brain

Multiciliated ependymal cells line the ventricles in the adult brain. Abnormal function or structure of ependymal cilia is associated with various neurological deficits. The current ex vivo live imaging of motile ependymal cilia technique allows for a detailed study of ciliary dynamics following several steps. These steps include: mice euthanasia with carbon dioxide according to protocols of The University of Toledo&#8217;s Institutional Animal Care and Use Committee (IACUC); craniectomy followed by brain removal and sagittal brain dissection with a vibratome or sharp blade to obtain very thin sections through the brain lateral ventricles, where the ependymal cilia can be visualized. Incubation of the brain&#8217;s slices in a customized glass-bottom plate containing Dulbecco&#8217;s Modified Eagle&#8217;s Medium (DMEM)/High-Glucose at 37 &#176;C in the presence of 95%/5% O2/CO2 mixture is essential to keep the tissue alive during the experiment. A video of the cilia beating is then recorded using a high-resolution differential interference contrast microscope. The video is then analyzed frame by frame to calculate the ciliary beating frequency. This allows distinct classification of the ependymal cells into three categories or types based on their ciliary beating frequency and angle. Furthermore, this technique allows the use of high-speed fluorescence imaging analysis to characterize the unique intracellular calcium oscillation properties of ependymal cells as well as the effect of pharmacological agents on the calcium oscillations and the ciliary beating frequency. In addition, this technique is suitable for immunofluorescence imaging for ciliary structure and ciliary protein localization studies. This is particularly important in disease diagnosis and phenotype studies. The main limitation of the technique is attributed to the decrease in live motile cilia movement as the brain tissue starts to die.

Using high-resolution differential interference contrast (DIC) microscopy, an ex vivo observation of the beating of motile ependymal cilia located within the mouse brain ventricles is demonstrated by live-imaging. The technique allows a recording of the unique ciliary beating frequency and beating angle as well as their intracellular calcium oscillation pacing properties.

Multiciliated ependymal cells line the ventricles in the adult brain. Abnormal function or structure of ependymal cilia is associated with various ...

Isolation and Culture of Chick Ciliary Ganglion Neurons

Chick ciliary ganglia (CG) are part of the parasympathetic nervous system and are responsible for the innervation of the muscle tissues present in the eye. This ganglion is constituted by a homogenous population of ciliary and choroidal neurons that innervate striated and smooth muscle fibers, respectively. Each of these neuronal types regulate specific eye structures and functions. Over the years, neuronal cultures of the chick ciliary ganglia were shown to be effective cell models in the study of muscle-nervous system interactions, which communicate through cholinergic synapses. Ciliary ganglion neurons are, in its majority, cholinergic. This cell model has been shown to be useful comparatively to previously used heterogeneous cell models that comprise several neuronal types, besides cholinergic. Anatomically, the ciliary ganglion is localized between the optic nerve (ON) and the choroid fissure (CF). Here, we describe a detailed procedure for the dissection, dissociation and in vitro culture of ciliary ganglia neurons from chick embryos. We provide a step-by-step protocol in order to obtain highly pure and stable cellular cultures of CG neurons, highlighting key steps of the process. These cultures can be maintained in vitro for 15 days and, hereby, we show the normal development of CG cultures. The results also show that these neurons can interact with muscle fibers through neuro-muscular cholinergic synapses.

Chick ciliary ganglia (CG) are part of the parasympathetic nervous system. Neuronal cultures of chick CG neurons were shown to be effective cell models in the study of nerve muscle interactions. We describe a detailed protocol for the dissection, dissociation and in vitro culture of CG neurons from chick embryos.

Chick ciliary ganglia (CG) are part of the parasympathetic nervous system and are responsible for the innervation of the muscle tissues present in the ...

Microsurgical Dissection and Tissue Clearing for High Resolution Intact Whole Retina and Vitreous Imaging

Neuronal and vascular structures of the retina in physiologic and pathologic conditions can be better visualized and characterized by using intact whole retina imaging techniques compared to conventional retinal flat mount preparations and sections. However, immunofluorescent imaging of intact whole retina is hindered by the opaque coatings of the eyeball, i.e., sclera, choroid, and retinal pigment epithelium (RPE) and the light scattering properties of retinal layers that prevent full thickness high resolution optical imaging. Chemical bleaching of the pigmented layers and tissue clearing protocols have been described to address these obstacles; however, currently described methods are not suitable for imaging endogenous fluorescent molecules such as green fluorescent protein (GFP) in intact whole retina. Other approaches bypassed this limitation by surgical removal of pigmented layers and the anterior segment of the eyeball allowing intact eye imaging, though the peripheral retina and hyaloid structures were disrupted. Presented here is an intact whole retina and vitreous immunofluorescent imaging protocol that combines surgical dissection of the sclera/choroid/retina pigment epithelium (RPE) layers with a modified tissue clearing method and light sheet fluorescent microscopy (LSFM). The new approach offers an unprecedented view of&#160;unperturbed vascular and neuronal elements of the retina as well as the vitreous and hyaloid vascular system in pathologic conditions.

Presented here is a protocol for intact whole retina imaging in which the outer opaque/pigmented layers of the eyeball are surgically removed, and optical clearing is applied to render retina transparent enabling the visualization of the peripheral retina and hyaloid vasculature in intact retina using light sheet fluorescent microscopy.

Neuronal and vascular structures of the retina in physiologic and pathologic conditions can be better visualized and characterized by using intact whole ...

Full-Circle Cauterization of Limbal Vascular Plexus for Surgically Induced Glaucoma in Rodents

Glaucoma, the second leading cause of blindness worldwide, is a heterogeneous group of ocular disorders characterized by structural damage to the optic nerve and retinal ganglion cell (RGC) degeneration, resulting in visual dysfunction by interrupting the transmission of visual information from the eye to the brain. Elevated intraocular pressure is the most important risk factor; thus, several models of ocular hypertension have been developed in rodents by either genetic or experimental approaches to investigate the causes and effects of the disease. Among those, some limitations have been reported such as surgical invasiveness, inadequate functional assessment, requirement of extensive training, and highly variable extension of retinal damage. The present work characterizes a simple, low-cost, and efficient method to induce ocular hypertension in rodents, based on low-temperature, full-circle cauterization of the limbal vascular plexus, a major component of aqueous humor drainage. The new model provides a technically easy, noninvasive, and reproducible subacute ocular hypertension, associated with progressive RGC and optic nerve degeneration, and a unique post-operative clinical recovery rate that allows in vivo functional studies by both electrophysiological and behavioral methods.

The goal of this protocol is to characterize a novel model of glaucomatous neurodegeneration based on 360&#176; thermic cauterization of limbal vascular plexus, inducing subacute ocular hypertension.

Glaucoma, the second leading cause of blindness worldwide, is a heterogeneous group of ocular disorders characterized by structural damage to the optic ...

Microdissection and Whole Mount Scanning Electron Microscopy Visualization of Mouse Choroid Plexus

The choroid plexus (CP), a highly vascularized structure protruding into the ventricles of the brain, is one of the most understudied tissues in neuroscience. As it is becoming increasingly clear that this tiny structure plays a crucial role in health and disease of the central nervous system (CNS), it is of utmost importance to properly dissect the CP out of the brain ventricles in a way that allows downstream processing, ranging from functional to structural analysis. Here, isolation of the lateral and fourth brain ventricle mouse CP without the need for specialized tools or equipment is described. This isolation technique preserves the viability, function, and structure of cells within the CP. On account of its high vascularization, the CP can be visualized floating inside the ventricular cavities of the brain using a binocular microscope. However, transcardial perfusion required for downstream analysis can complicate the identification of the CP tissue. Depending on the further processing steps (e.g., RNA and protein analysis), this can be solved by visualizing the CP via transcardial perfusion with bromophenol blue. After isolation, the CP can be processed using several techniques, including RNA, protein, or single cell analysis, to gain further understanding on the function of this special brain structure. Here, scanning electron microscopy (SEM) on whole mount CP is used to get an overall view of the structure.

The choroid plexus (CP), an understudied tissue in neuroscience, plays a key role in health and disease of the central nervous system. This protocol describes a microdissection technique for isolating the CP and the use of scanning electron microscopy to obtain an overall view of its cellular structure.

The choroid plexus (CP), a highly vascularized structure protruding into the ventricles of the brain, is one of the most understudied tissues in ...

An Ex Vivo Choroid Sprouting Assay of Ocular Microvascular Angiogenesis

Pathological choroidal angiogenesis, a salient feature of age-related macular degeneration, leads to vision impairment and blindness. Endothelial cell (EC) proliferation assays using human retinal microvascular endothelial cells (HRMECs) or isolated primary retinal ECs are widely used in vitro models to study retinal angiogenesis. However, isolating pure murine retinal endothelial cells is technically challenging and retinal ECs may have different proliferation responses than choroidal endothelial cells and different cell/cell interactions. A highly reproducible ex vivo choroidal sprouting assay as a model of choroidal microvascular proliferation was developed. This model includes the interaction between choroid vasculature (EC, macrophages, pericytes) and retinal pigment epithelium (RPE). Mouse RPE/choroid/scleral explants are isolated and incubated in growth-factor-reduced basal membrane extract (BME) (day 0). Medium is changed every other day and choroid sprouting is quantified at day 6. The images of individual choroid explant are taken with an inverted phase microscope and the sprouting area is quantified using a semi-automated macro plug-in to the ImageJ software developed in this lab. This reproducible ex vivo choroidal sprouting assay can be used to assess compounds for potential treatment and for microvascular disease research to assess pathways involved in choroidal micro vessel proliferation using wild type and genetically modified mouse tissue.

This protocol presents choroid sprouting assay, an ex vivo model of microvascular proliferation. This assay can be used to assess pathways involved in proliferating choroidal micro vessels and assess drug treatments using wild type and genetically modified mouse tissue.

Pathological choroidal angiogenesis, a salient feature of age-related macular degeneration, leads to vision impairment and blindness. Endothelial cell ...

Biology

Live Imaging of Ependymal Cell Ciliary Activity in a Mouse Brain Section

Source:&#160;<a style='text-decoration:none;' href='https://app.jove.com/t/52853/live-imaging-of-the-ependymal-cilia-in-the-lateral-ventricles-of-the-mouse-brain'><span style='-webkit-text-decoration-skip:none;font-family:Arial,sans-serif;font-size:12pt;font-style:normal;font-variant:normal;font-weight:400;text-decoration-skip-ink:none;vertical-align:baseline;white-space:pre-wrap;'>Al Omran, A. J.,&#160;et al<span style='-webkit-text-decoration-skip:none;font-family:Arial,sans-serif;font-size:12pt;font-style:normal;font-variant:normal;font-weight:400;text-decoration-skip-ink:none;vertical-align:baseline;white-space:pre-wrap;'>. Live Imaging of the Ependymal Cilia in the Lateral Ventricles of the Mouse Brain.&#160;J. Vis. Exp.<span style='-webkit-text-decoration-skip:none;font-family:Arial,sans-serif;font-size:12pt;font-style:normal;font-variant:normal;font-weight:400;text-decoration-skip-ink:none;vertical-align:baseline;white-space:pre-wrap;'> (2015).</a> &#160;This video demonstrates a live-imaging technique using differential interference contrast (DIC) microscopy to observe the beating of ependymal cilia in sagittal mouse brain sections. Ependymal cilia propel cerebrospinal fluid (CSF), and their activity is recorded in brain sections maintained in a nutrient-rich medium and imaged in a climate-controlled chamber. High-contrast videos enable the identification of functional cilia and quantify their beating frequency.

Source:&#160;Al Omran, A. J.,&#160;et al. Live Imaging of the Ependymal Cilia in the Lateral Ventricles of the Mouse Brain.&#160;J. Vis. Exp. ...

JoVE Encyclopedia of Experiments

Neuroimaging

Live Imaging & In Vivo Tracking

Choroid Sprouting Assay to Study Ocular Microvascular Proliferation Ex Vivo

Source: Tomita, Y., et al. <a href="https://app.jove.com/v/61677">An Ex Vivo Choroid Sprouting Assay of Ocular Microvascular Angiogenesis.</a> J. Vis. Exp. (2020)
This video demonstrates the development of an ex vivo model of choroidal sprouting to study ocular microvascular angiogenesis. The assay involves culturing mouse eye explants containing the choroid tissue attached to the sclera and retinal pigment epithelium under specific conditions that promote choroidal microvascular sprouting.

Source: Tomita, Y., et al. An Ex Vivo Choroid Sprouting Assay of Ocular Microvascular Angiogenesis. J. Vis. Exp. (2020)
This video demonstrates the ...

Biological Techniques

Assay Techniques

Cell-based assays

Isolating Immune Cells from Mouse Choroid Plexuses

Source: Dominguez-Belloso, et al. <a href="https://app.jove.com/v/63487">Isolation and Characterization of the Immune Cells from Micro-dissected Mouse Choroid Plexuses.</a> J. Vis. Exp. (2022)
This video demonstrates the procedure of isolating immune cells from mouse choroid plexuses. This procedure is used in neuroimmunology research to understand how immune cells in the choroid plexuses impact brain health and various neurological diseases.

All procedures involving animal models have been reviewed by the local institutional animal care committee and the JoVE veterinary review board. 
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Observation of the Ciliary Movement of Choroid Plexus Epithelial Cells Ex Vivo

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