Sridhar Sivasubbu

Proteomic analysis of zebrafish (Danio rerio) embryos exposed to cyclosporine A.

De novo identification of viral pathogens from cell culture hologenomes.

Antagonism of microRNA function in zebrafish embryos by using locked nucleic acid enzymes (LNAzymes).

High resolution methylome map of rat indicates role of intragenic DNA methylation in identification of coding region.

A case for pharmacogenomics in management of cardiac arrhythmias.

Conceptual approaches for lncRNA drug discovery and future strategies.

Reverse genetics screen in zebrafish identifies a role of miR-142a-3p in vascular development and integrity.

Systematic transcriptome wide analysis of lncRNA-miRNA interactions.

miR-34 is maternally inherited in Drosophila melanogaster and Danio rerio.

A sequence-based variation map of zebrafish.

lncRNome: a comprehensive knowledgebase of human long noncoding RNAs.

Draft Genome Sequence of a Clinical Isolate of Multidrug-Resistant Mycobacterium tuberculosis East African Indian Strain OSDD271.

Systematic pharmacogenomics analysis of a Malay whole genome: proof of concept for personalized medicine.

Draft Genome Sequence of an Extensively Drug-Resistant Mycobacterium tuberculosis Clinical Isolate of the Ural Strain OSDD493.

Draft Genome Sequence of Multidrug-Resistant Mycobacterium tuberculosis Clinical Isolate OSDD515, Belonging to the Uganda I Genotype.

Draft Genome Sequence of a Multidrug-Resistant Clinical Isolate of Mycobacterium tuberculosis Belonging to a Novel Spoligotype.

Time for the zebrafish ENCODE.

Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish.

Morphological effects of G-quadruplex stabilization using a small molecule in zebrafish.

Draft Genome Sequence of Urease-Producing Sporosarcina pasteurii with Potential Application in Biocement Production.

The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation.

Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome.

Non-coding RNA based regulation of blood vessel development in zebrafish and relevance to humans.

Short stories on zebrafish long noncoding RNAs.

Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India.

mit-o-matic: a comprehensive computational pipeline for clinical evaluation of mitochondrial variations from next-generation sequencing datasets.

Erratum for Behera et al., Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India.

Comparative whole-genome analysis of clinical isolates reveals characteristic architecture of Mycobacterium tuberculosis pangenome.

Exome sequencing of patients with histiocytoid cardiomyopathy reveals a de novo NDUFB11 mutation that plays a role in the pathogenesis of histiocytoid cardiomyopathy.

Screening currency notes for microbial pathogens and antibiotic resistance genes using a shotgun metagenomic approach.

zflncRNApedia: A Comprehensive Online Resource for Zebrafish Long Non-Coding RNAs.

Case Report: Whole exome sequencing helps in accurate molecular diagnosis in siblings with a rare co-occurrence of paternally inherited 22q12 duplication and autosomal recessive non-syndromic ichthyosis.

Chamber Specific Gene Expression Landscape of the Zebrafish Heart.

Aptamer-Assisted Detection of the Altered Expression of Estrogen Receptor Alpha in Human Breast Cancer.

Exome sequencing reveals a novel mutation, p.L325H, in the KRT5 gene associated with autosomal dominant Epidermolysis Bullosa Simplex Koebner type in a large family from western India.

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Development of a fluorescent transgenic zebrafish biosensor for sensing aquatic heavy metal pollution.

Case Report: Whole exome sequencing reveals a novel frameshift deletion mutation p.G2254fs in COL7A1 associated with autosomal recessive dystrophic epidermolysis bullosa.

Egyptian tale from India: application of whole-exome sequencing in diagnosis of atypical familial Mediterranean fever.

Neuroanatomical demonstration of calbindin 2a- and calbindin 2b-like calcium binding proteins in the early embryonic development of zebrafish: mRNA study.

Classical autophagy proteins LC3B and ATG4B facilitate melanosome movement on cytoskeletal tracks.

RNA sequencing of db/db mice liver identifies lncRNA H19 as a key regulator of gluconeogenesis and hepatic glucose output.

Case Report: Whole exome sequencing identifies a novel frameshift insertion c.1325dupT (p.F442fsX2) in the tyrosine kinase domain of gene in a young Indian individual with X-linked agammaglobulinemia.

Case Report: Application of whole exome sequencing for accurate diagnosis of rare syndromes of mineralocorticoid excess.

Case Report: Whole exome sequencing identifies variation c.2308G>A p.E770K in associated with B- T- NK+ severe combined immunodeficiency.

STIM1 activation of adenylyl cyclase 6 connects Ca and cAMP signaling during melanogenesis.

RNA secondary structure profiling in zebrafish reveals unique regulatory features.

Organellar transcriptome sequencing reveals mitochondrial localization of nuclear encoded transcripts.

Whole exome sequencing in a multi-generation family from India reveals a genetic variation c.10C>T (p.Gln4Ter) in keratin 5 gene associated with Dowling-Degos disease.

Large scale changes in the transcriptome of Eisenia fetida during regeneration.

Identification of novel circadian transcripts in the zebrafish retina.

Knockdown of calcium-binding calb2a and calb2b genes indicates the key regulator of the early development of the zebrafish, Danio rerio.

Methods for Annotation and Validation of Circular RNAs from RNAseq Data.

Methods to Study Long Noncoding RNA Expression and Dynamics in Zebrafish Using RNA Sequencing.

A genome-wide map of circular RNAs in adult zebrafish.

A novel cathepsin D mutation in 2 siblings with late infantile neuronal ceroid lipofuscinosis.

Loss of function mutation in the P2X7, a ligand-gated ion channel gene associated with hypertrophic cardiomyopathy.

Investigating Coronary Artery Disease methylome through targeted bisulfite sequencing.

Saliva microbiome in primary Sjögren's syndrome reveals distinct set of disease-associated microbes.

Genomics of rare genetic diseases-experiences from India.

pH-controlled histone acetylation amplifies melanocyte differentiation downstream of MITF.

A Temporal Map of Gene Expression Pattern During Zebrafish Liver Regeneration.

Role of Tmem163 in zinc-regulated insulin storage of MIN6 cells: Functional exploration of an Indian type 2 diabetes GWAS associated gene.

Histone variant dictates fate biasing of neural crest cells to melanocyte lineage.

Maternal vitamin B deficiency in rats alters DNA methylation in metabolically important genes in their offspring.

Building the vertebrate codex using the gene breaking protein trap library.

Spectrum of clinical features and genetic variants in mevalonate kinase (MVK) gene of South Indian families suffering from Hyperimmunoglobulin D Syndrome.

Asymptomatic Reinfection in 2 Healthcare Workers From India With Genetically Distinct Severe Acute Respiratory Syndrome Coronavirus 2.

Parental Experience of Hematopoietic Stem Cell Transplantation for Children with Primary Immune Deficiency Disorders.

IndiGenomes: a comprehensive resource of genetic variants from over 1000 Indian genomes.

A rapid and sensitive method to detect SARS-CoV-2 virus using targeted-mass spectrometry.

Analysis of the potential impact of genomic variants in global SARS-CoV-2 genomes on molecular diagnostic assays.

Asymptomatic reactivation of SARS-CoV-2 in a child with neuroblastoma characterised by whole genome sequencing.

DALIA- a comprehensive resource of Disease Alleles in Arab population.

Genomic analysis of patients in a South Indian Community with autosomal dominant cortical tremor, myoclonus and epilepsy suggests a founder repeat expansion mutation in the gene.

Chronic systemic exposure to IL6 leads to deregulation of glycolysis and fat accumulation in the zebrafish liver.

High throughput detection and genetic epidemiology of SARS-CoV-2 using COVIDSeq next-generation sequencing.

Symptomatic reinfection of SARS-CoV-2 with spike protein variant N440K associated with immune escape.

Genome and transcriptome analysis of the mealybug Maconellicoccus hirsutus: Correlation with its unique phenotypes.

Genomic survey of SARS-CoV-2 vaccine breakthrough infections in healthcare workers from Kerala, India.

LncRNA VEAL2 regulates PRKCB2 to modulate endothelial permeability in diabetic retinopathy.

Whole genome sequencing identifies novel structural variant in a large Indian family affected with X-linked agammaglobulinemia.

An optimized, amplicon-based approach for sequencing of SARS-CoV-2 from patient samples using COVIDSeq assay on Illumina MiSeq sequencing platforms.

A genome-wide circular RNA transcriptome in rat.

Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India.

SARS-CoV-2 vaccine breakthrough infection following a previous infection in a healthcare worker.

Variants of concern responsible for SARS-CoV-2 vaccine breakthrough infections from India.

Genetic epidemiology of autoinflammatory disease variants in Indian population from 1029 whole genomes.

Clinical, immunological and genomic characteristics of children with X-linked agammaglobulinemia from Kerala, South India.

An insertion map of the Indian population: identification and analysis in 1021 genomes of the IndiGen project.