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PRC2 is dispensable for -mediated transcriptional repression.
The EMBO journal 04, 2017 | Pubmed ID: 28167697
Adrenal GIPR expression and chromosome 19q13 microduplications in GIP-dependent Cushing's syndrome.
JCI insight 09, 2017 | Pubmed ID: 28931750
VAMP: visualization and analysis of array-CGH, transcriptome and other molecular profiles.
Bioinformatics (Oxford, England) Sep, 2006 | Pubmed ID: 16820431
High-resolution mapping of DNA breakpoints to define true recurrences among ipsilateral breast cancers.
Journal of the National Cancer Institute Jan, 2008 | Pubmed ID: 18159071
Tumor aromatase expression as a prognostic factor for local control in young breast cancer patients after breast-conserving treatment.
Breast cancer research : BCR , 2009 | Pubmed ID: 19638208
Multiparametric analysis of cytokine-driven human Th17 differentiation reveals a differential regulation of IL-17 and IL-22 production.
Blood Oct, 2009 | Pubmed ID: 19704117
Highly dynamic and sex-specific expression of microRNAs during early ES cell differentiation.
PLoS genetics Aug, 2009 | Pubmed ID: 19714213
LINE-1 activity in facultative heterochromatin formation during X chromosome inactivation.
Cell Jun, 2010 | Pubmed ID: 20550932
EMA - A R package for Easy Microarray data analysis.
BMC research notes Nov, 2010 | Pubmed ID: 21047405
Importance of pre-analytical steps for transcriptome and RT-qPCR analyses in the context of the phase II randomised multicentre trial REMAGUS02 of neoadjuvant chemotherapy in breast cancer patients.
BMC cancer Jun, 2011 | Pubmed ID: 21631949
Search for a gene expression signature of breast cancer local recurrence in young women.
Clinical cancer research : an official journal of the American Association for Cancer Research Mar, 2012 | Pubmed ID: 22271875
Deep-sequencing protocols influence the results obtained in small-RNA sequencing.
PloS one , 2012 | Pubmed ID: 22384282
Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Nature May, 2012 | Pubmed ID: 22495304
Independent transcriptional reprogramming and apoptosis induction by cisplatin.
Cell cycle (Georgetown, Tex.) Sep, 2012 | Pubmed ID: 22918244
HiTC: exploration of high-throughput 'C' experiments.
Bioinformatics (Oxford, England) Nov, 2012 | Pubmed ID: 22923296
ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data.
Bioinformatics (Oxford, England) Dec, 2012 | Pubmed ID: 23044543
Designs and challenges for personalized medicine studies in oncology: focus on the SHIVA trial.
Targeted oncology Dec, 2012 | Pubmed ID: 23161020
Telomere crisis in kidney epithelial cells promotes the acquisition of a microRNA signature retrieved in aggressive renal cell carcinomas.
Carcinogenesis May, 2013 | Pubmed ID: 23358853
RNAi-dependent and independent control of LINE1 accumulation and mobility in mouse embryonic stem cells.
PLoS genetics Nov, 2013 | Pubmed ID: 24244175
Changes in the organization of the genome during the mammalian cell cycle.
Genome biology , 2013 | Pubmed ID: 24368000
Developmental dynamics and disease potential of random monoallelic gene expression.
Developmental cell Feb, 2014 | Pubmed ID: 24576422
Combinatorial flexibility of cytokine function during human T helper cell differentiation.
Nature communications May, 2014 | Pubmed ID: 24865484
Bioinformatics for precision medicine in oncology: principles and application to the SHIVA clinical trial.
Frontiers in genetics , 2014 | Pubmed ID: 24910641
[Biological network modelling and precision medicine in oncology].
Bulletin du cancer Jun, 2014 | Pubmed ID: 24966078
Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data.
Bioinformatics (Oxford, England) Dec, 2014 | Pubmed ID: 25016581
Epigenomic alterations in breast carcinoma from primary tumor to locoregional recurrences.
PloS one , 2014 | Pubmed ID: 25098247
Jarid2 Methylation via the PRC2 Complex Regulates H3K27me3 Deposition during Cell Differentiation.
Molecular cell Mar, 2015 | Pubmed ID: 25620564
The spectrum of clinical trials aiming at personalizing medicine.
Chinese clinical oncology Jun, 2014 | Pubmed ID: 25841410
Combinatorial code governing cellular responses to complex stimuli.
Nature communications Apr, 2015 | Pubmed ID: 25896517
Mechanical induction of the tumorigenic β-catenin pathway by tumour growth pressure.
Nature Jul, 2015 | Pubmed ID: 25970250
DNA methylation restrains transposons from adopting a chromatin signature permissive for meiotic recombination.
Genes & development Jun, 2015 | Pubmed ID: 26109049
Molecularly targeted therapy based on tumour molecular profiling versus conventional therapy for advanced cancer (SHIVA): a multicentre, open-label, proof-of-concept, randomised, controlled phase 2 trial.
The Lancet. Oncology Oct, 2015 | Pubmed ID: 26342236
Design and statistical principles of the SHIVA trial.
Chinese clinical oncology Sep, 2015 | Pubmed ID: 26408299
Integration of a Radiosensitivity Molecular Signature Into the Assessment of Local Recurrence Risk in Breast Cancer.
International journal of radiation oncology, biology, physics Nov, 2015 | Pubmed ID: 26461005
Treatment Algorithms Based on Tumor Molecular Profiling: The Essence of Precision Medicine Trials.
Journal of the National Cancer Institute Apr, 2016 | Pubmed ID: 26598514
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.
Genome biology , 2015 | Pubmed ID: 26619908
Impaired PRC2 activity promotes transcriptional instability and favors breast tumorigenesis.
Genes & development Dec, 2015 | Pubmed ID: 26637281
Maternal LSD1/KDM1A is an essential regulator of chromatin and transcription landscapes during zygotic genome activation.
eLife , 2016 | Pubmed ID: 26836306
Xist-dependent imprinted X inactivation and the early developmental consequences of its failure.
Nature structural & molecular biology 03, 2017 | Pubmed ID: 28134930
Genetic and epigenetic features direct differential efficiency of Xist-mediated silencing at X-chromosomal and autosomal locations.
Nature communications 09, 2017 | Pubmed ID: 28947736
Contribution of epigenetic landscapes and transcription factors to X-chromosome reactivation in the inner cell mass.
Nature communications 11, 2017 | Pubmed ID: 29101321
Exome sequencing reveals aberrant signalling pathways as hallmark of treatment-naive anal squamous cell carcinoma.
Oncotarget Jan, 2018 | Pubmed ID: 29416628
Revisited analysis of a SHIVA01 trial cohort using functional mutational analyses successfully predicted treatment outcome.
Molecular oncology 05, 2018 | Pubmed ID: 29464843
Challenges for the implementation of high-throughput testing and liquid biopsies in personalized medicine cancer trials.
Personalized medicine Jul, 2014 | Pubmed ID: 29758779
Transcriptome Profiling of Single Mouse Oocytes.
Methods in molecular biology (Clifton, N.J.) , 2018 | Pubmed ID: 29961255
Effective normalization for copy number variation in Hi-C data.
BMC bioinformatics Sep, 2018 | Pubmed ID: 30189838
Familial breast cancer and DNA repair genes: Insights into known and novel susceptibility genes from the GENESIS study, and implications for multigene panel testing.
International journal of cancer 04, 2019 | Pubmed ID: 30303537
BAP1 complex promotes transcription by opposing PRC1-mediated H2A ubiquitylation.
Nature communications 01, 2019 | Pubmed ID: 30664650
Lineage tracing of Notch1-expressing cells in intestinal tumours reveals a distinct population of cancer stem cells.
Scientific reports 01, 2019 | Pubmed ID: 30696875
EZH1/2 function mostly within canonical PRC2 and exhibit proliferation-dependent redundancy that shapes mutational signatures in cancer.
Proceedings of the National Academy of Sciences of the United States of America 03, 2019 | Pubmed ID: 30867289
Clinical and genetic landscape of treatment naive cervical cancer: Alterations in PIK3CA and in epigenetic modulators associated with sub-optimal outcome.
EBioMedicine May, 2019 | Pubmed ID: 30952619
The bipartite TAD organization of the X-inactivation center ensures opposing developmental regulation of Tsix and Xist.
Nature genetics 06, 2019 | Pubmed ID: 31133748
EZHIP constrains Polycomb Repressive Complex 2 activity in germ cells.
Nature communications 08, 2019 | Pubmed ID: 31451685
Efficacy of molecularly targeted agents given in the randomised trial SHIVA01 according to the ESMO Scale for Clinical Actionability of molecular Targets.
European journal of cancer (Oxford, England : 1990) 11, 2019 | Pubmed ID: 31593830
Improving breast cancer sensitivity to paclitaxel by increasing aneuploidy.
Proceedings of the National Academy of Sciences of the United States of America 11, 2019 | Pubmed ID: 31685623
Clonally Expanded T Cells Reveal Immunogenicity of Rhabdoid Tumors.
Cancer cell 12, 2019 | Pubmed ID: 31708437
A Conserved Noncoding Locus Regulates Random Monoallelic Xist Expression across a Topological Boundary.
Molecular cell 01, 2020 | Pubmed ID: 31759823
Mechanistic Signatures of Human Papillomavirus Insertions in Anal Squamous Cell Carcinomas.
Cancers Nov, 2019 | Pubmed ID: 31766658
Parental-to-embryo switch of chromosome organization in early embryogenesis.
Nature 04, 2020 | Pubmed ID: 32238933
Corrigendum to 'clinical and genetic landscape of treatment naive cervical cancer: Alterations in PIK3CA and in epigenetic modulators associated with sub-optimal outcome'.
EBioMedicine 07, 2020 | Pubmed ID: 32650273
CD44 regulates epigenetic plasticity by mediating iron endocytosis.
Nature chemistry 10, 2020 | Pubmed ID: 32747755
Bioinformatic Analysis of Single-Cell Hi-C Data from Early Mouse Embryo.
Methods in molecular biology (Clifton, N.J.) , 2021 | Pubmed ID: 32944918
Interactive analysis of single-cell epigenomic landscapes with ChromSCape.
Nature communications 11, 2020 | Pubmed ID: 33177523
Human papilloma virus (HPV) integration signature in Cervical Cancer: identification of MACROD2 gene as HPV hot spot integration site.
British journal of cancer 02, 2021 | Pubmed ID: 33191407
SMARCA4-deficient rhabdoid tumours show intermediate molecular features between SMARCB1-deficient rhabdoid tumours and small cell carcinomas of the ovary, hypercalcaemic type.
The Journal of pathology 09, 2021 | Pubmed ID: 33999421
A computational method for prioritizing targeted therapies in precision oncology: performance analysis in the SHIVA01 trial.
NPJ precision oncology Jun, 2021 | Pubmed ID: 34162980
Human papilloma virus integration sites and genomic signatures in head and neck squamous cell carcinoma.
Molecular oncology 08, 2022 | Pubmed ID: 35398964
Inversion of a topological domain leads to restricted changes in its gene expression and affects interdomain communication.
Development (Cambridge, England) 05, 2022 | Pubmed ID: 35502750
Bioinformatics Methods for ChIP-seq Histone Analysis.
Methods in molecular biology (Clifton, N.J.) , 2022 | Pubmed ID: 35733020
Compartment-specific and ELAVL1-coordinated regulation of intronic polyadenylation isoforms by doxorubicin.
Genome research Jul, 2022 | Pubmed ID: 35858751
Genomics to select treatment for patients with metastatic breast cancer.
Nature Oct, 2022 | Pubmed ID: 36071165
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