Edward F. DeLong

Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces.

Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea.

Unsuspected diversity among marine aerobic anoxygenic phototrophs.

Towards microbial systems science: integrating microbial perspective, from genomes to biomes.

Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments.

Power from the deep.

Microbial population genomics and ecology.

Microbiology: all in the packaging.

Molecular diversity among marine picophytoplankton as revealed by psbA analyses.

Growth and methane oxidation rates of anaerobic methanotrophic archaea in a continuous-flow bioreactor.

Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea.

Novel Proteorhodopsin variants from the Mediterranean and Red Seas.

Proteorhodopsin genes are distributed among divergent marine bacterial taxa.

Microbiology: reconstructing the wild types.

Microbial population genomics and ecology: the road ahead.

Different SAR86 subgroups harbour divergent proteorhodopsins.

Reverse methanogenesis: testing the hypothesis with environmental genomics.

Microbiology. Microbial life breathes deep.

Microbial community genomics in the ocean.

Growth and population dynamics of anaerobic methane-oxidizing archaea and sulfate-reducing bacteria in a continuous-flow bioreactor.

Histones in crenarchaea.

Metagenomic analysis reveals diverse polyketide synthase gene clusters in microorganisms associated with the marine sponge Discodermia dissoluta.

Genomic perspectives in microbial oceanography.

Community genomics among stratified microbial assemblages in the ocean's interior.

Comparative genomics of DNA fragments from six Antarctic marine planktonic bacteria.

Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea.

Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota.

Genomic islands and the ecology and evolution of Prochlorococcus.

Archaeal mysteries of the deep revealed.

Archaeal pre-mRNA splicing: a connection to hetero-oligomeric splicing endonuclease.

Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum.

Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phyla.

Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre.

Microbiology. Life on the thermodynamic edge.

Low genomic diversity in tropical oceanic N2-fixing cyanobacteria.

Design and testing of 'genome-proxy' microarrays to profile marine microbial communities.

Fosmids of novel marine Planctomycetes from the Namibian and Oregon coast upwelling systems and their cross-comparison with planctomycete genomes.

Microbial community gene expression in ocean surface waters.

Phylogenetic analyses of ribosomal DNA-containing bacterioplankton genome fragments from a 4000 m vertical profile in the North Pacific Subtropical Gyre.

The microbial engines that drive Earth's biogeochemical cycles.

Genomic patterns of recombination, clonal divergence and environment in marine microbial populations.

Characterizing microbial diversity in production water from an Alaskan mesothermic petroleum reservoir with two independent molecular methods.

Modern microbial seascapes. Forward.

Near real-time, autonomous detection of marine bacterioplankton on a coastal mooring in Monterey Bay, California, using rRNA-targeted DNA probes.

The microbial ocean from genomes to biomes.

Metatranscriptomics reveals unique microbial small RNAs in the ocean's water column.

Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre.

Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses.

Abundances of crenarchaeal amoA genes and transcripts in the Pacific Ocean.

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics.

The light-driven proton pump proteorhodopsin enhances bacterial survival during tough times.

Time-series analyses of Monterey Bay coastal microbial picoplankton using a 'genome proxy' microarray.

Microbial community transcriptomes reveal microbes and metabolic pathways associated with dissolved organic matter turnover in the sea.

A cryptic sulfur cycle in oxygen-minimum-zone waters off the Chilean coast.

Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean.

Microbial metatranscriptomics in a permanent marine oxygen minimum zone.

Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010.

Meeting Report: BioSharing at ISMB 2010.

Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities.

Light-induced transcriptional responses associated with proteorhodopsin-enhanced growth in a marine flavobacterium.

Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton.

Metatranscriptomic analysis of sulfur oxidation genes in the endosymbiont of solemya velum.

Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.

Transcriptional responses of surface water marine microbial assemblages to deep-sea water amendment.

Phosphite utilization by the marine picocyanobacterium Prochlorococcus MIT9301.

Comparison of large-insert, small-insert and pyrosequencing libraries for metagenomic analysis.

Evolution. Microbial evolution in the wild.

PhnY and PhnZ comprise a new oxidative pathway for enzymatic cleavage of a carbon-phosphorus bond.

Experimental incubations elicit profound changes in community transcription in OMZ bacterioplankton.

Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria.

Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone.

Microbial oceanography of anoxic oxygen minimum zones.

Oxygen minimum zones harbour novel viral communities with low diversity.

Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations.

Pattern and synchrony of gene expression among sympatric marine microbial populations.

Characterization of canthaxanthin biosynthesis genes from an uncultured marine bacterium.

Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone.

Preface. Microbial metagenomics, metatranscriptomics, and metaproteomics.

Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations of Prochlorococcus, Pelagibacter and the OM60 clade.

Metatranscriptomic and functional metagenomic analysis of methylphosphonate utilization by marine bacteria.

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype.

Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria.

Closely related phytoplankton species produce similar suites of dissolved organic matter.

Planktonic Euryarchaeota are a significant source of archaeal tetraether lipids in the ocean.

Ocean microbes. Multispecies diel transcriptional oscillations in open ocean heterotrophic bacterial assemblages.

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.

Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome.

Meeting report: Ocean 'omics science, technology and cyberinfrastructure: current challenges and future requirements (August 20-23, 2013).

Reply to Schouten et al.: Marine Group II planktonic Euryarchaeota are significant contributors to tetraether lipids in the ocean.

Alien invasions and gut "island biogeography".

Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile.

Microbial eukaryote diversity in the marine oxygen minimum zone off northern Chile.

Genomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone.

Microbial community transcriptional networks are conserved in three domains at ocean basin scales.