Luke C. Swenson

HIV coreceptor phenotyping in the clinical setting.

HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins.

Phylogenetic analysis of population-based and deep sequencing data to identify coevolving sites in the nef gene of HIV-1.

Improved detection of CXCR4-using HIV by V3 genotyping: application of population-based and "deep" sequencing to plasma RNA and proviral DNA.

Deep sequencing to infer HIV-1 co-receptor usage: application to three clinical trials of maraviroc in treatment-experienced patients.

"Dynamic range" of inferred phenotypic HIV drug resistance values in clinical practice.

Mutations in gp41 are correlated with coreceptor tropism but do not improve prediction methods substantially.

Detection of inferred CCR5- and CXCR4-using HIV-1 variants and evolutionary intermediates using ultra-deep pyrosequencing.

Deep V3 sequencing for HIV type 1 tropism in treatment-naive patients: a reanalysis of the MERIT trial of maraviroc.