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A laser capture microdissection (LCM) protocol was developed to obtain sufficient quantity of high-quality RNA for gene expression analysis in bone cells. The current study focusses on mouse femur sections. However, the LCM protocol reported here can be used to study gene expression in cells of any hard tissue.
RNA yield and integrity are decisive for RNA analysis. However, it is often technically challenging to maintain RNA integrity throughout the entire laser capture microdissection (LCM) procedure. Since LCM studies work with low amounts of material, concerns about limited RNA yields are also important. Therefore, an LCM protocol was developed to obtain sufficient quantity of high-quality RNA for gene expression analysis in bone cells. The effect of staining protocol, thickness of cryosections, microdissected tissue quantity, RNA extraction kit, and LCM system used on RNA yield and integrity obtained from microdissected bone cells was evaluated. Eight-µm-thick frozen bone sections were made using an adhesive film and stained using a rapid protocol for a commercial LCM stain. The sample was sandwiched between a polyethylene terephthalate (PET) membrane and the adhesive film. An LCM system that uses gravity for sample collection and a column-based RNA extraction method were used to obtain high quality RNAs of sufficient yield. The current study focusses on mouse femur sections. However, the LCM protocol reported here can be used to study in situ gene expression in cells of any hard tissue in both physiological conditions and disease processes.
Tissues are made up of heterogeneous and spatially distributed cell types. Different cell types in a given tissue may respond differently to the same signal. Therefore, it is essential being able to isolate specific cell populations for the assessment of the role of different cell types in both physiological and pathological conditions. Laser capture microdissection (LCM) offers a relatively rapid and precise method for isolating and removing specified cells from complex tissues1. LCM systems use the power of a laser beam to separate the cells of interest from histological tissue sections without the need for enzymatic processing or growth in c....
Bone tissue from mice was used in strict accordance with prevailing guidelines for animal care and all efforts were made to minimize animal suffering.
1. Animals and Freeze Embedding
An LCM protocol was developed to obtain sufficient quantity of high-quality RNA for gene expression analysis in bone cells of mouse femurs. In the optimized protocol, 8 µm-thick frozen bone sections were cut on an adhesive film and stained using a rapid protocol for a commercial LCM frozen section stain. The sample was sandwiched between the PET membrane and the adhesive film. Mouse bone cells were microdissected using an LCM system that uses gravity for sample collection. A column-based RNA extraction method was us.......
Both RNA quality and quantity can be affected negatively at all stages of the sample preparation such as tissue manipulation, LCM process, and RNA extraction. Therefore, an LCM protocol was developed to obtain sufficient amount of high-quality RNA for subsequent gene expression analysis.
For LCM, most laboratories use sections 7−8 µm thick2. Thicker sections would allow more material to be harvested. However, if they are too thick, this could reduce the microscopic resolu.......
The authors thank Ute Zeitz and Nikole Ginner for their excellent technical help as well as the Vetcore and animal care staff for their support.
....Name | Company | Catalog Number | Comments |
2-Mercaptoethanol | Sigma | 63689-25ML-F | |
Absolute ethanol EMPLURA | Merck Millipore | 8,18,76,01,000 | |
Adhesive film (LMD film) | Section-Lab | C-FL001 | |
Agilent 2100 Bioanalyzer System | Agilent Technologies | ||
Agilent RNA 6000 Pico Chip Kit | Agilent Technologies | 5067-1513 | |
Arcturus HistoGene Staining Solution | Applied Biosystems | 12241-05 | |
Cryofilm fitting tool | Section-Lab | C-FT000 | |
Cryostat Leica CM 1950 | Leica Biosystems | ||
glass microscope slides, cut colour frosted orange | VWR Life Science | 631-1559 | |
Histology tissue molds PVC | MEDITE | 48-6302-00 | |
LMD7 Laser Mikrodissektion System | Leica Microsystems | ||
Low profile Microtome Blades Leica DB80 XL | Leica Biosystems | 14035843496 | |
Nuclease-free water | VWR Life Science | E476-500ML | |
PET membrane slides 1.4 mircon | Molecular Machines & Industries GmbH | 50102 | |
RNase Away surface decontaminant | Molecular BioProduct | 7002 | |
RNeasy Micro Kit | Qiagen | 74004 | |
Tissue-Tek optimal cutting temperature (OCT) compound | Sakura Finetek | 4583 | |
Xylene | VWR Life Science | 2,89,73,363 |
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