JoVE Logo
Faculty Resource Center

Sign In

Volume Segmentation and Analysis of Biological Materials Using SuRVoS (Super-region Volume Segmentation) Workbench

DOI :

10.3791/56162-v

11:38 min

August 23rd, 2017

August 23rd, 2017

9,455 Views

1Science Division, Harwell Science and Innovation Campus, Diamond Light Source, 2School of Computer Science, University of Nottingham

Segmentation of three-dimensional data from many imaging techniques is a major bottleneck in analysis of complex biological systems. Here, we describe the use of SuRVoS Workbench to semi-automatically segment volumetric data at various length-scales using example datasets from cryo-electron tomography, cryo soft X-ray tomography, and phase contrast X-ray tomography techniques.

Tags

Keywords Volume Segmentation

-- Views

Related Videos

article

Large Volume (20L+) Filtration of Coastal Seawater Samples

article

Small Volume (1-3L) Filtration of Coastal Seawater Samples

article

Concentration Determination of Nucleic Acids and Proteins Using the Micro-volume Bio-spec Nano Spectrophotometer

article

Aseptic Laboratory Techniques: Volume Transfers with Serological Pipettes and Micropipettors

article

Protein WISDOM: A Workbench for In silico De novo Design of BioMolecules

article

Reconstruction of 3-Dimensional Histology Volume and its Application to Study Mouse Mammary Glands

article

Cardiac Pressure-Volume Loop Analysis Using Conductance Catheters in Mice

article

Measuring Pressure Volume Loops in the Mouse

article

ACT-PRESTO: Biological Tissue Clearing and Immunolabeling Methods for Volume Imaging

article

Biological Sample Preparation by High-pressure Freezing, Microwave-assisted Contrast Enhancement, and Minimal Resin Embedding for Volume Imaging

JoVE Logo

Privacy

Terms of Use

Policies

Research

Education

ABOUT JoVE

Copyright © 2024 MyJoVE Corporation. All rights reserved