We thank Jessica Goldshteyn for technical support. Work in the Song lab is funded by the NIH grant R00NS088211, and the Intellectual and Developmental Disabilities Research Center (IDDRC) New Program Development Award.

1. Preparation of Culture Plates and Bottles
<ol>
	<li>Preparation of grape juice agar plates
	<ol>
		<li>Add 10 g of agar powder, 200 mL grape juice, and 192 mL ddH2O into a beaker and microwave for about 4-5 min, stirring intermittently until the agar is completely dissolved.</li>
		<li>In a fume hood, cool down the solution to approx. 60 &#176;C. Add 4.2 mL 95% ethanol and 4.0 mL glacial acetic acid. Adjust the total volume of the solution to 400 mL with ddH2O. Mix well.</li>
		<li>For each 35-mm plate, add about 2-3 mL of the solution. Make approximately 120-150 plates for a total of 400 mL grape juice agar solution.</li>
		<li>Wait for 10 min to cool down the plates and solidify the agar solution. Pack the grape juice agar plates in self-sealed ziplock bags and store at 4&#176;C for future use.</li>
	</ol>
	</li>
	<li>Preparation of Drosophila culture bottles
	<ol>
		<li>Use a blade to punch a 1.5 cm side length triangular hole on one wall of the Drosophila culture bottle and fill the hole with a 2-2.5 cm diameter ball of cotton for ventilation.</li>
		<li>Plug the bottle with a grape juice agar plate supplemented with about 0.5 cm3 of yeast paste.</li>
	</ol>
	</li>
</ol>
2. Collection of Drosophila Larvae
<ol>
	<li>Set up crosses of adult flies
	<ol>
		<li>Place 10 virgin females and 5 male adult flies together in a culture bottle plugged with a grape juice agar plate.</li>
		<li>Place the bottle bottoms up at 25&#176;C, so that flies will lay eggs on the grape juice agar plate. Change the plate with yeast paste at least once a day. For a 2-h collection period, which permits the harvesting of larvae of a homogenous developmental stage, start with more than 20 virgin females and 10 males in Step 2.1.1.</li>
		<li>Culture the plate at 25&#176;C in a 60-mm Petri dish with a wet tissue, for example, soaked in 0.5% propionic acid solution. Arrange the tissue so that it does not block oxygen flow. 
		NOTE: The propionic acid solution is used to maintain humidity in the dish and avoid the growth of mold.</li>
	</ol>
	</li>
	<li>Harvest larvae of a specific age
	<ol>
		<li>Use a pair of forceps to transfer larvae of the desired stage, for example, 2nd to 3rd instar larvae at 48-72 h after egg laying (AEL), to a new grape juice agar plate without yeast paste.</li>
		<li>Remove the yeast from the larvae&#39;s skin by letting them crawl around on the new plate, to prevent from potential interfering of yeast with laser axotomy and imaging. Alternatively, thoroughly clean the larvae by washing them in a dish of PBS and drying briefly on a piece of tissue paper.</li>
	</ol>
	</li>
</ol>
3. Two-photon Injury and Confocal Imaging
<ol>
	<li>Microscope setup 
	NOTE: A confocal laser scanning microscope with a two-photon laser was used for this experiment, but other systems with an equivalent setup will also suffice. The two-photon laser (930 nm) was used for delivering injury and an Argon laser (488 nm) was used for confocal imaging of GFP.
	<ol>
		<li>At the beginning of each session, turn on the two-photon laser and/or the confocal laser(s), and the microscope. Open the imaging software.</li>
		<li>For two-photon injury, set up the following parameters for imaging GFP with the two-photon laser at 930 nm (1,950 mW).
		<ol>
			<li>Select line scan mode. Open up the pinhole all the way. Increase laser intensity to ~20% (390 mW).</li>
			<li>Select 512 x 512 as the frame scan. Use maximal scanning speed (typically with the pixel dwell time at 0.77 &#181;s). Ensure that the average number is 1 and bit depth is 8 bits.</li>
			<li>Set gain to ~750, and the offset to 0.</li>
			<li>Save this pre-set experimental protocol as 2P GFP 930 Ablation, allowing for easy reuse in future experiments.</li>
		</ol>
		</li>
		<li>For confocal imaging, set up the following parameters for imaging GFP with the Argon laser at 488 nm:
		<ol>
			<li>Select the Acquisition tab and then Z-stack.</li>
			<li>Under &#34;Laser&#34;, turn on the power for the 488 nm Argon laser.</li>
			<li>Go to Channels, select the 488 mm laser, and increase the laser power to 5-10%. For the pinhole, use the 1-2 airy unit (AU). Adjust the gain to 650.</li>
			<li>In Acquisition Mode, select 1024 x 1024 as the frame scan, use the maximum scan speed, an average number of 2, and bit depth of 8 Bit.</li>
			<li>Save this pre-set experimental protocol as GFP Imaging.</li>
		</ol>
		</li>
	</ol>
	</li>
	<li>Larvae anesthesia with diethyl ether and mounting
	<ol>
		<li>In a fume hood, place a 60-mm glass dish in a 15-cm plastic Petri dish. Fold and lay a piece of tissue paper at the bottom of the glass dish, then place a grape juice agar plate on the tissue. Add diethyl ether into the glass dish, to the point where the tissue paper is soaked and there is a layer of liquid ether remaining in the dish. Keep the lid on at all times.</li>
		<li>Prepare a glass slide with one drop of halocarbon 27 oil in the center. Add 4 spots of vacuum grease onto the four corners of the slide, to later support the coverslip.</li>
		<li>Use forceps to pick up a cleaned larva and place it on the agar plate in the 60-mm glass dish. Cover the glass dish with its lid and wait until the larva stops moving. For PNS injury/imaging, take out the larva as soon as its tail stops twitching. For the CNS, wait until the entire larva becomes motionless, especially the head segments. 
		NOTE: The timing of ether exposure is critical. See Discussion.</li>
		<li>Carefully pick up the anesthetized larva and place it head-upright into the drop of halocarbon oil on the slide. Add a coverslip on top of the slide. Use gentle pressure to push down on the coverslip, until it touches the larva (Figure 1A).</li>
		<li>Adjust the larva&#39;s position by gently pushing the coverslip towards the left or right to roll the larva, so that the neuron/axon/dendrite of interest is on the top and closest to the microscope lens.</li>
		<li>For PNS injury, mount the larva dorsal side up, so that both the tracheas are visible. Then roll the larva ~30 degrees to the left for injuring class III da neuron axons (Figure 1B and 1C), 90 degrees for injuring class IV da neuron axons (Figure 1B and 1E), or ~30 degrees for injuring class IV da neuron dendrites (Figure 2A).</li>
		<li>For CNS injury, position the larva to be perfectly ventral side up (Figure 3A), so that the region of interest is closest to the microscope lens in the z-plane.</li>
	</ol>
	</li>
	<li>Injury by two-photon laser
	<ol>
		<li>Place the slide with the larva under the microscope and secure it in place with the slide holder on the stage. Use the 10X (0.3 NA) objective to find the larva.</li>
		<li>Add 1 drop of objective oil onto the coverslip, switch to the 40X (1.3 NA) objective and adjust the focus.</li>
		<li>Switch to the scanning mode and reuse the experimental protocol 2P GFP 930 Ablation. Make sure the pinhole is opened all the way. 
		NOTE: The configuration needs to be optimized based on individual systems.</li>
		<li>Start the Live mode to locate the region of interest (ROI), and fine-tune the settings to achieve good image quality with the appropriate zoom. 
		NOTE: The purpose of this step is to find the neuron/axon/dendrite to injure, rather than taking the best quality image. Therefore, use the minimal settings sufficient to visualize the target area, in order to avoid overexposure or photobleaching.</li>
		<li>Stop Live scan, so that the Crop button will become available. Let the still image serve as the roadmap. Select the Crop function and adjust the scan window to focus on the target to be injured.</li>
		<li>Reduce the ROI to be the size of the prospective site of injury. For example, just cover the width of an axon or a dendrite, to ensure the precision of the injury and reduce damage to neighboring tissues. If desired, zoom in on the ROI before cropping, allowing for more precise injury.</li>
		<li>Open a new imaging window. Reduce the scan speed and increase laser intensity. Determine the increase in laser intensity based on the tissue fluorescence signal scanned in Live mode.</li>
		<li>Typically, set the two-photon laser intensity starting from 25% for PNS injury and 50-100% for VNC injury. For PNS axon injury, ensure that the laser intensity is ~480 mW and pixel dwell time is 8.19 &#956;s. For the VNC axon injury, ensure that the laser intensity and pixel dwell time are usually 965-1930 mW and 8.19-32.77 &#956;s, respectively.</li>
		<li>Start Continuous scan. Leave the cursor hovering over the Continuous button. Keep a close eye on the image and stop the scan as soon as a drastic increase in fluorescence is observed. 
		NOTE: The appearance of the fluorescence spike is due to auto-fluorescence at the injury site.</li>
		<li>Switch back to the Live mode by reusing the settings. Find the region of interest that was just targeted by adjusting the focus. 
		NOTE: A good indication of successful injury is the appearance of a small crater, ring-like structure, or localized debris right at the injury site.</li>
		<li>Move to the next neuron and repeat from Step 3.3.5, to injure multiple neurons in a single animal. Or repeat Step 3.3.5 while gradually increasing the power and/or reducing scan speed if the initial injury was insufficient. 
		NOTE: In the case that the laser power is too high, a large damaged area will be visible in the post-injury live scan image. Too much injury may cause the death of the larva.</li>
		<li>Recover the larva by carefully removing the coverslip and transferring the injured larva onto a new plate with yeast paste. Ditch several caves on the agar plate with forceps; alternatively, make an island of agar in the plate instead of using the whole plate, to reduce the possibility of the larva crawling out of the plate.</li>
		<li>Put the plate in a 60-mm Petri dish with wet tissue (soaked with 0.5% propionic acid solution) and culture at room temperature or 25&#176;C. 
		NOTE: The larva will remain in the larval stage for approximately an extra day at room temperature (22&#176;C) compared to at 25&#176;C.</li>
	</ol>
	</li>
	<li>Post-injury confocal imaging
	<ol>
		<li>Image the injured larva at desired time points by preparing the larva using the same procedure of anesthesia and mounting as in Step 3.2, then imaging with the confocal laser. 
		NOTE: Image the larva at 24 h after injury (AI) to confirm axonal injury and at 48 h AI (class IV da neurons) or 72 h AI (class III da neurons) to assess regeneration.</li>
		<li>Locate the larva using the 10X objective, then switch to a 25X (0.8 NA) objective. Reuse the experimental protocol GFP Imaging.</li>
		<li>Click the Live button and find the same neuron injured previously.</li>
		<li>Set the first and last Z positions in the live scan window. Press stop and click Start experiment to acquire a Z-stack image. 
		NOTE: Make sure that a normalization point (the axon converging point) is included when capturing images so that quantification of regeneration is possible (Figure 1D, 1F) &#8211; this is discussed further in the data analysis section.</li>
		<li>Switch to Image Processing, select the image just taken, and generate a maximum intensity projection. Save both the z-stack and maximum intensity projection images.</li>
	</ol>
	</li>
</ol>
4. Data Analysis
<ol>
	<li>Process and quantify images using either the imaging software or ImageJ.</li>
	<li>Quantification of axon regeneration in the PNS
	<ol>
		<li>Calculate Regeneration percentage, which refers to the percent of regenerating axons among all the axons that were lesioned. Score an axon as regenerating as long as it regrows beyond the injury site.</li>
		<li>Measure Regeneration length, which is the increase in axon length. If quantifying with ImageJ, use the Segmented Line tool to trace the regenerated axon, and use Measure in the Analyze drop-down menu to obtain the length of the line representing the regenerated axon.</li>
		<li>Calculate Regeneration Index, which is the increase in normalized axon length. 
		NOTE: Axon length is normalized by the distance between the cell body and the axon converging point (DCAC) &#8211; axon length/DCAC (Figure 1D and 1F). This value helps account for any axonal growth that is due to larval scaling. A positive value represents regeneration, a value of 0 means no regeneration, and a negative value means retraction.</li>
	</ol>
	</li>
	<li>Quantification of dendrite regeneration
	<ol>
		<li>Calculate Regeneration percentage, which is the percent of da neurons among all those severed that show obvious dendrite regrowth. 
		NOTE: Dendrite regrowth is scored as positive if new dendrites regrow out from the retracted dendritic stem and beyond the injury site. The injury site is determined by landmarks, and in some cases, is readily visible due to the residual injury-induced autofluorescence.</li>
		<li>Calculate Increase of branch points, which counts the addition of new dendritic branch points after injury.</li>
		<li>Calculate Increase of total dendrite length, which is the cumulative length of all the new dendrites added after injury.</li>
	</ol>
	</li>
	<li>Quantification of axon regeneration in the CNS 
	NOTE: If a lesion site shows degeneration at the first time point imaged (Figure 3B), it will be included in the analysis of regeneration length and rate.
	<ol>
		<li>Measure Regeneration length, which is the length of the regrowing axon. 
		NOTE: The regrowing axon of a single lesion site is identified as it originates off the original axon route before the injury.</li>
		<li>Calculate Normalized regeneration length, which normalizes the regeneration length to the length of the commissure segment - the longitudinal distance between commissures (&#34;Y&#34; in Figure 3A and 3B). 
		NOTE: This value helps correct for the effect of larval size differences.</li>
		<li>Calculate Regeneration rate, which is the percent of regenerating segments among all the segments that were lesioned, to reflect the regeneration capacity of a particular genotype.</li>
	</ol>
	</li>
</ol>

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W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Motor+axon+regeneration+and+muscle+reinnervation+in+young+adult+and+aged+animals.">Motor axon regeneration and muscle reinnervation in young adult and aged animals.</a> J Neurosci. 33, 19480-19491 (2013).</li><li>Duan, X., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Subtype-specific+regeneration+of+retinal+ganglion+cells+following+axotomy:+effects+of+osteopontin+and+mTOR+signaling.">Subtype-specific regeneration of retinal ganglion cells following axotomy: effects of osteopontin and mTOR signaling.</a> Neuron. 85, 1244-1256 (2015).</li><li>Lee, T., Luo, L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Mosaic+analysis+with+a+repressible+cell+marker+for+studies+of+gene+function+in+neuronal+morphogenesis.">Mosaic analysis with a repressible cell marker for studies of gene function in neuronal morphogenesis.</a> Neuron. 22, 451-461 (1999).</li><li>Grueber, W. B., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Projections+of+Drosophila+multidendritic+neurons+in+the+central+nervous+system:+links+with+peripheral+dendrite+morphology.">Projections of Drosophila multidendritic neurons in the central nervous system: links with peripheral dendrite morphology.</a> Development. 134, 55-64 (2007).</li><li>Buss, A., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=NG2+and+phosphacan+are+present+in+the+astroglial+scar+after+human+traumatic+spinal+cord+injury.">NG2 and phosphacan are present in the astroglial scar after human traumatic spinal cord injury.</a> BMC Neurol. 9, 32 (2009).</li><li>McKeon, R. J., Jurynec, M. J., Buck, C. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+chondroitin+sulfate+proteoglycans+neurocan+and+phosphacan+are+expressed+by+reactive+astrocytes+in+the+chronic+CNS+glial+scar.">The chondroitin sulfate proteoglycans neurocan and phosphacan are expressed by reactive astrocytes in the chronic CNS glial scar.</a> J Neurosci. 19, 10778-10788 (1999).</li><li>Raabe, I., Vogel, S. K., Peychl, J., Tolic-Norrelykke, I. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Intracellular+nanosurgery+and+cell+enucleation+using+a+picosecond+laser.">Intracellular nanosurgery and cell enucleation using a picosecond laser.</a> J Microsc. 234, 1-8 (2009).</li><li>Hutson, M. S., Ma, X. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Plasma+and+cavitation+dynamics+during+pulsed+laser+microsurgery+in+vivo.">Plasma and cavitation dynamics during pulsed laser microsurgery in vivo.</a> Phys Rev Lett. 99, 158104 (2007).</li><li>Venugopalan, V., Guerra, A., Nahen, K., Vogel, A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Role+of+laser-induced+plasma+formation+in+pulsed+cellular+microsurgery+and+micromanipulation.">Role of laser-induced plasma formation in pulsed cellular microsurgery and micromanipulation.</a> Phys Rev Lett. 88, 078103 (2002).</li><li>Bourgeois, F., Ben-Yakar, A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Femtosecond+laser+nanoaxotomy+properties+and+their+effect+on+axonal+recovery+in+C.+elegans.">Femtosecond laser nanoaxotomy properties and their effect on axonal recovery in C. elegans.</a> Opt Express. 16, 5963 (2008).</li><li>O'Brien, G. S., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Two-photon+axotomy+and+time-lapse+confocal+imaging+in+live+zebrafish+embryos.">Two-photon axotomy and time-lapse confocal imaging in live zebrafish embryos.</a> J Vis Exp. , (2009).</li><li>Tsai, P. S., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Plasma-mediated+ablation:+an+optical+tool+for+submicrometer+surgery+on+neuronal+and+vascular+systems.">Plasma-mediated ablation: an optical tool for submicrometer surgery on neuronal and vascular systems.</a> Curr Opin Biotechnol. 20, 90-99 (2009).</li><li>Chung, S. H., Clark, D. A., Gabel, C. V., Mazur, E., Samuel, A. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+role+of+the+AFD+neuron+in+C.+elegans+thermotaxis+analyzed+using+femtosecond+laser+ablation.">The role of the AFD neuron in C. elegans thermotaxis analyzed using femtosecond laser ablation.</a> BMC Neurosci. 7, 30 (2006).</li><li>Williams, W., Nix, P., Bastiani, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Constructing+a+low-budget+laser+axotomy+system+to+study+axon+regeneration+in+C.+elegans.">Constructing a low-budget laser axotomy system to study axon regeneration in C. elegans.</a> J Vis Exp. , (2011).</li></ol>

The authors have nothing to disclose.

When setting up fly crosses, the number of females and males used can vary depending on the genotypes and the number of larvae needed for specific experiments. For WT flies, typical cross uses 10 females and 5 males. The collection window may be narrowed, depending on the accuracy of the larvae age required. For example, a 2-h collection period will yield larvae of a more homogenous population. In this case, using 20 or more virgin females to set up the crosses will help yield sufficient eggs. The yield from the first da...

The inability of axons to regenerate after an injury to the central nervous system (CNS), may lead to permanent disabilities in patients, and also plays a role in the irreversible neurological deficits in neurodegenerative diseases1,2,3,4,5. The CNS environment, as well as the intrinsic growth ability of neurons, determines whether axons are able to regenerate after trauma. Extracellular factors from oligodendrocyte, astroglial, and fibroblastic sources have been shown to impede neuronal growth4,6,7,8, but the elimination of these molecules only allows for limited sprouting5. Intrinsic regeneration signals can influence regenerative success5,9 and represent potential therapeutic targets, but these processes are still not well-defined at the molecular level. Increases in trophic factor signaling or elimination of endogenous brakes, such as the Pten phosphatase10, can result in axonal regeneration in certain circumstances. Combinations of different methods found to be individually effective also only provide limited overall recovery to date11,12,13,14. Therefore, there is a desperate need to identify additional pathways for targeted therapy. In addition to the initiation of axon regrowth, whether and how axons re-wire to the correct target, reform synapse specificity, and achieve functional recovery are important unanswered questions.
In summary, current understanding of the machinery dictating axon regeneration is still very fragmentary. Part of the problem is the technical difficulty of studying axon regeneration in mammals in real-time, an approach that is costly, time-consuming, and challenging for conducting large-scale genetic screens. Drosophila melanogaster, on the other hand, has proven to be an exceptionally powerful system for the study of complex biological questions. The fruit fly has been instrumental in defining genes and signaling pathways that are strikingly conserved in humans and has been a successful model for the study of human conditions, such as neurodegenerative diseases, through the vast molecular genetics tools available to manipulate gene function15. In particular, fruit flies are considered to be an ideal tool for the discovery of genes involved in neural injury and regrowth15,16. Several fly neural injury models have been developed, including adult-head or larval ventral nerve cord (VNC) stabbing with needles, larval VNC or nerve crush with forceps, larval neuron laser axotomy, olfactory receptor neuron removal, brain explants injury, and peripheral nerve lesion by wing severance15,17,18,19,20,21,22,23. Excitingly, recent work utilizing Drosophila injury models have&#160;advanced our understanding of the cellular and genetic pathways used by the nervous system to respond to neural injuries, some of which have been shown to be conserved in mammals24,25. Again, this emphasizes the utility of this model organism for identifying novel mechanisms of neural repair.
Described here is a two-photon laser-based Drosophila larval sensory neuron injury model. A two-photon laser was first used to cut axons in zebrafish in vivo in 200326. In the same year, the first laser dendriotomy was performed in Drosophila using a pulsed nitrogen laser27. Shortly afterward, several C. elegans labs used femtosecond lasers to establish models of axon regeneration28. In 2007, Wu and colleagues compared and reported the differences between laser injuries in C. elegans induced by various types of lasers29. In 2010, axon regeneration after laser axotomy was first shown to occur in Drosophila30. Building on this extensive laser injury literature, we have developed a fly neural injury model using the two-photon laser, which allows precise induction of injury to targeted sites with minimal perturbation of neighboring tissues, providing a relatively clean system to study both the intrinsic and extrinsic properties of neuroregeneration with single-cell resolution. Specifically, we have established a set of injury methods for dendritic arborization (da) sensory neurons in both the peripheral nervous system (PNS) and CNS. Da neurons can be grouped into four distinct classes distinguished primarily by their dendrite branching complexities: class I to IV31. Our published work shows that da neuron regeneration resembles mammalian injury models at the phenotypic and molecular level: da neurons display class specific regeneration properties, with class IV but not class I or III da neurons exhibiting regeneration in the PNS; class IV da neuron axons regenerate robustly in the periphery, but their regenerative potential is dramatically reduced in the CNS, thus resembling dorsal root ganglion (DRG) neurons in mammals; enhancing mTOR activity via Pten deletion or Akt overexpression enhances axon regeneration in the fly CNS19. Utilizing this injury model, we have been performing genetic screens and have identified the RNA processing enzyme Rtca as an evolutionarily conserved inhibitory factor for axon regeneration, linking axon injury to cellular stress and RNA modification20.
In the presented paradigm, the injury is induced via laser axotomy/dendriotomy of larval class IV or III da neurons, labeled by ppk-CD4-tdGFP or 19-12-Gal4, UAS-CD4-tdGFP, repo-Gal80, respectively. The injury is performed on 2nd to 3rd instar larvae at around 48 - 72 h after egg laying (h AEL). For PNS axotomy the lesion is targeted to the section of axon ~20 - 50 &#181;m away from the cell body, for CNS axotomy to an area of ~20 &#181;m in diameter at the commissure junction in the VNC, and for dendriotomy to the primary dendritic branch points. The same neuron is imaged at 8 - 24 h after injury (AI) to confirm complete transection, and at 48 - 72 h AI to assess regeneration. Through time-lapse confocal imaging, the degeneration and regeneration of individual axons/dendrites that have been injured in vivo can be monitored over time.

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a drosophila in vivo injury model for studying neuroregeneration in the peripheral and central nervous system

The regrowth capacity of damaged neurons governs neuroregeneration and functional recovery after nervous system trauma. Over the past few decades, various intrinsic and extrinsic inhibitory factors involved in the restriction of axon regeneration have been identified. However, simply removing these inhibitory cues is insufficient for successful regeneration, indicating the existence of additional regulatory machinery. Drosophila melanogaster, the fruit fly, shares evolutionarily conserved genes and signaling pathways with vertebrates, including humans. Combining the powerful genetic toolbox of flies with two-photon laser axotomy/dendriotomy, we describe here the Drosophila sensory neuron &#8211; dendritic arborization (da) neuron injury model as a platform for systematically screening for novel regeneration regulators. Briefly, this paradigm includes a) the preparation of larvae, b) lesion induction to dendrite(s) or axon(s) using a two-photon laser, c) live confocal imaging post-injury and d) data analysis. Our model enables highly reproducible injury of single labeled neurons, axons, and dendrites of well-defined neuronal subtypes, in both the peripheral and central nervous system.

Da neurons show differential regeneration potential between the peripheral and central nervous system, as well as class specificity. This provides unique opportunities to screen for novel factors that are required for axon regeneration (using class IV PNS injury), as well as those that are inhibitory for regeneration (with class IV CNS injury and class III PNS injury).
Axon regeneration in the PNS
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Watch this Scientific Journal Video about A Drosophila In Vivo Injury Model for Studying Neuroregeneration in the Peripheral and Central Nervous System at JoVE.com

A Drosophila In Vivo Injury Model for Studying Neuroregeneration in the Peripheral and Central Nervous System | Medicine | Video

A Drosophila In Vivo Injury Model for Studying Neuroregeneration in the Peripheral and Central Nervous System

Here, we present a protocol using the Drosophila sensory neuron - dendritic arborization (da) neuron injury model, which combines in vivo live imaging, two-photon laser axotomy/dendriotomy, and the powerful fly genetic toolbox, as a platform for screening potential promoters and inhibitors of neuroregeneration.

A Drosophila In Vivo Injury Model for Studying Neuroregeneration in the Peripheral and Central Nervous System

The regrowth capacity of damaged neurons governs neuroregeneration and functional recovery after nervous system trauma. Over the past few decades, various ...

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9.6K Views.  The Children's Hospital of Philadelphia. Here, we present a protocol using the Drosophila sensory neuron - dendritic arborization (da) neuron injury model, which combines in vivo live imaging, two-photon laser axotomy/dendriotomy, and the powerful fly genetic toolbox, as a platform for screening potential promoters and inhibitors of neuroregeneration.

Video: A Drosophila In Vivo Injury Model for Studying Neuroregeneration in the Peripheral and Central Nervous System

An in vivo Rodent Model of Contraction-induced Injury and Non-invasive Monitoring of Recovery

Muscle strains are one of the most common complaints treated by physicians. A muscle injury is typically diagnosed from the patient history and physical exam alone, however the clinical presentation can vary greatly depending on the extent of injury, the patient's pain tolerance, etc. In patients with muscle injury or muscle disease, assessment of muscle damage is typically limited to clinical signs, such as tenderness, strength, range of motion, and more recently, imaging studies. Biological markers, such as serum creatine kinase levels, are typically elevated with muscle injury, but their levels do not always correlate with the loss of force production. This is even true of histological findings from animals, which provide a "direct measure" of damage, but do not account for all the loss of function. Some have argued that the most comprehensive measure of the overall health of the muscle in contractile force. Because muscle injury is a random event that occurs under a variety of biomechanical conditions, it is difficult to study. Here, we describe an in vivo animal model to measure torque and to produce a reliable muscle injury. We also describe our model for measurement of force from an isolated muscle in situ. Furthermore, we describe our small animal MRI procedure.

An in vivo Rodent Model of Contraction-induced Injury and Non-invasive Monitoring of Recovery

An in vivo animal model of injury is described. The method takes advantage of the subcutaneous position of the fibular nerve. Velocity, timing of muscle activation, and arc of motion are all pre-determined and synchronized using commercial software. Post injury changes are monitored in vivo using MR imaging/spectroscopy.

Muscle strains are one of the most  common complaints treated by physicians. A muscle injury is typically diagnosed from the patient history and  physical ...

Technical Aspects of the Mouse Aortocaval Fistula

Technical aspects of creating an arteriovenous fistula in the mouse are discussed. Under general anesthesia, an abdominal incision is made, and the aorta and inferior vena cava (IVC) are exposed. The proximal infrarenal aorta and the distal aorta are dissected for clamp placement and needle puncture, respectively. Special attention is paid to avoid dissection between the aorta and the IVC. After clamping the aorta, a 25 G needle is used to puncture both walls of the aorta into the IVC. The surrounding connective tissue is used for hemostatic compression. Successful creation of the AVF will show pulsatile arterial blood flow in the IVC. Further confirmation of successful AVF can be achieved by post-operative Doppler ultrasound.

The goal is to produce an arteriovenous fistula that is simple and reproducible. This method does not use sutures or glue adhesive. Therefore the samples can be used with the least amount of foreign materials for analysis.

Technical aspects of creating an arteriovenous fistula in the mouse are discussed. Under general anesthesia, an abdominal incision is made, and the aorta ...

Oxygen-Glucose Deprivation and Reoxygenation as an In Vitro Ischemia-Reperfusion Injury Model for Studying Blood-Brain Barrier Dysfunction

Ischemia-Reperfusion (IR) injury is known to contribute significantly to the morbidity and mortality associated with ischemic strokes. Ischemic cerebrovascular accidents account for 80% of all strokes. A common cause of IR injury is the rapid inflow of fluids following an acute/chronic occlusion of blood, nutrients, oxygen to the tissue triggering the formation of free radicals.
Ischemic stroke is followed by blood-brain barrier (BBB) dysfunction and vasogenic brain edema. Structurally, tight junctions (TJs) between the endothelial cells play an important role in maintaining the integrity of the blood-brain barrier (BBB). IR injury is an early secondary injury leading to a non-specific, inflammatory response. Oxidative and metabolic stress following inflammation triggers secondary brain damage including BBB permeability and disruption of tight junction (TJ) integrity.
Our protocol presents an in vitro example of oxygen-glucose deprivation and reoxygenation (OGD-R) on rat brain endothelial cell TJ integrity and stress fiber formation. Currently, several experimental in vivo models are used to study the effects of IR injury; however they have several limitations, such as the technical challenges in performing surgeries, gene dependent molecular influences and difficulty in studying mechanistic relationships. However, in vitro models may aid in overcoming many of those limitations. The presented protocol can be used to study the various molecular mechanisms and mechanistic relationships to provide potential therapeutic strategies. However, the results of in vitro studies may differ from standard in vivo studies and should be interpreted with caution.

Oxygen-Glucose Deprivation and Reoxygenation as an In Vitro Ischemia-Reperfusion Injury Model for Studying Blood-Brain Barrier Dysfunction

Ischemia-Reperfusion (IR) injury is associated with a high rate of morbidity and mortality. The goal of the in vitro model of oxygen-glucose deprivation and reoxygenation (OGD-R) described here is to assess the effects of ischemia reperfusion injury on a variety of cells, particularly in blood-brain barrier (BBB) endothelial cells.

Ischemia-Reperfusion (IR) injury is known to contribute significantly to the morbidity and mortality associated with ischemic strokes. Ischemic ...

Studying Pancreatic Cancer Stem Cell Characteristics for Developing New Treatment Strategies

Pancreatic ductal adenocarcinoma (PDAC) contains a subset of exclusively tumorigenic cancer stem cells (CSCs) which have been shown to drive tumor initiation, metastasis and resistance to radio- and chemotherapy. Here we describe a specific methodology for culturing primary human pancreatic CSCs as tumor spheres in anchorage-independent conditions. Cells are grown in serum-free, non-adherent conditions in order to enrich for CSCs while their more differentiated progenies do not survive and proliferate during the initial phase following seeding of single cells. This assay can be used to estimate the percentage of CSCs present in a population of tumor cells. Both size (which can range from 35 to 250 micrometers) and number of tumor spheres formed represents CSC activity harbored in either bulk populations of cultured cancer cells or freshly harvested and digested tumors 1,2. Using this assay, we recently found that metformin selectively ablates pancreatic CSCs; a finding that was subsequently further corroborated by demonstrating diminished expression of pluripotency-associated genes/surface markers and reduced in vivo tumorigenicity of metformin-treated cells. As the final step for preclinical development we treated mice bearing established tumors with metformin and found significantly prolonged survival. Clinical studies testing the use of metformin in patients with PDAC are currently underway (e.g., NCT01210911, NCT01167738, and NCT01488552). Mechanistically, we found that metformin induces a fatal energy crisis in CSCs by enhancing reactive oxygen species (ROS) production and reducing mitochondrial transmembrane potential. In contrast, non-CSCs were not eliminated by metformin treatment, but rather underwent reversible cell cycle arrest. Therefore, our study serves as a successful example for the potential of in vitro sphere formation as a screening tool to identify compounds that potentially target CSCs, but this technique will require further in vitro and in vivo validation to eliminate false discoveries.

Pancreatic cancer stem cells (CSCs) can be expanded in vitro using the anchorage-independent sphere culture technique, which represents a powerful tool to study CSC biology and can serve as the first step to develop novel CSC-targeting therapies. Here the methodology for expanding, analyzing and targeting of pancreatic CSCs is provided.

Pancreatic ductal adenocarcinoma (PDAC) contains a subset of exclusively tumorigenic cancer stem cells (CSCs) which have been shown to drive tumor ...

Depletion of Mouse Cells from Human Tumor Xenografts Significantly Improves Downstream Analysis of Target Cells

The use of in vitro cell line models for cancer research has been a useful tool. However, it has been shown that these models fail to reliably mimic patient tumors in different assays1. Human tumor xenografts represent the gold standard with respect to tumor biology, drug discovery, and metastasis research 2-4. Tumor xenografts can be derived from different types of material like tumor cell lines, tumor tissue from primary patient tumors4 or serially transplanted tumors. When propagated in vivo, xenografted tissue is infiltrated and vascularized by cells of mouse origin. Multiple factors such as the tumor entity, the origin of xenografted material, growth rate and region of transplantation influence the composition and the amount of mouse cells present in tumor xenografts. However, even when these factors are kept constant, the degree of mouse cell contamination is highly variable.
Contaminating mouse cells significantly impair downstream analyses of human tumor xenografts. As mouse fibroblasts show high plating efficacies and proliferation rates, they tend to overgrow cultures of human tumor cells, especially slowly proliferating subpopulations. Mouse cell derived DNA, mRNA, and protein components can bias downstream gene expression analysis, next-generation sequencing, as well as proteome analysis 5. To overcome these limitations, we have developed a fast and easy method to isolate untouched human tumor cells from xenografted tumor tissue. This procedure is based on the comprehensive depletion of cells of mouse origin by combining automated tissue dissociation with the benchtop tissue dissociator and magnetic cell sorting. Here, we demonstrate that human target cells can be can be obtained with purities higher than 96% within less than 20 min independent of the tumor type.

Human tumor xenografts are vascularized and infiltrated by cells of mouse origin during the growth phase in vivo. To circumvent the bias caused by these contaminating cells during downstream analysis, we developed a method allowing for comprehensive depletion of all mouse cells by magnetic cell sorting.

The use of in vitro cell line models for cancer research has been a useful tool. However, it has been shown that these models fail to reliably mimic ...

A Repetitive Concussive Head Injury Model in Mice

Despite the concussion/ mild traumatic brain injury (mTBI) being the most frequent occurrence of traumatic brain injury, there is still a lack of knowledge on the injury and its effects. To develop a better understanding of concussions, animals are often used because they provide a controlled, rigorous, and efficient model. Studies have adapted traditional animal models to perform mTBI to stimulate mild injury severity by changing the injury parameters. These models have been used because they can produce morphologically similar brain injuries to the clinical condition and provide a spectrum of injury severities. However, they are limited in their ability to present the identical features of injuries in patients. Using a traditional impact system, a repetitive concussive injury (rCHI) model can induce mild to moderate human-like concussion. The injury degree can be determined by measuring the period of loss of consciousness (LOC) with a sign of a transient termination of breathing. The rCHI model is beneficial to use for its accuracy and simplicity in determining mTBI effects and potential treatments.

Concussion presents the most common type of traumatic brain injury. Therefore, a repetitive concussive animal model, which replicates the important features of an injury in patients, may provide a means to study concussion in a rigorous, controlled, and efficient manner.

Despite the concussion/ mild traumatic brain injury (mTBI) being the most frequent occurrence of traumatic brain injury, there is still a lack of ...

Induction of Accelerated Atherosclerosis in Mice: The "Wire-Injury" Model

Atherosclerosis is a proliferative fibro-inflammatory disease developing in the arterial wall, inducing a deficient blood flow or a lack of blood flow. Moreover, by rupture of the defective vascular wall, atherosclerosis induces occlusive thrombus formation, which represents the main cause of myocardial infarction or stroke and the most frequent cause of death. Despite the advances in the cardiovascular field, many questions remain unanswered, and additional basic research is essential to improve our understanding of the molecular mechanisms during atherosclerosis and its effects. Due to limited clinical studies, there is a need for representative animal models recreating atherosclerotic conditions such as neointima formation after stent implantation, balloon angioplasty, or endarterectomy. Since the mouse presents many advantages and is the most frequently used model for studying molecular processes, the current study proposes an invasive procedure of endothelial denudation, also known as the wire-injury model, which is representative of the human condition of neointima formation in arteries after revascularization procedures.

This study describes an invasive procedure for the induction of accelerated atherosclerosis in mice. In comparison to other methods using electric- or cryo-induced injury, mechanical-induced injury mimics the human condition of restenosis after revascularization therapies and is ideal for the study of the molecular mechanisms involved.

Atherosclerosis is a proliferative fibro-inflammatory disease developing in the arterial wall, inducing a deficient blood flow or a lack of blood flow. ...

Open Tracheostomy Gastric Acid Aspiration Murine Model of Acute Lung Injury Results in Maximal Acute Nonlethal Lung Injury

Acid pneumonitis is a major cause of sterile acute lung injury (ALI) in humans. Acid pneumonitis spans the clinical spectrum from asymptomatic to acute respiratory distress syndrome (ARDS), characterized by neutrophilic alveolitis, and injury to both alveolar epithelium and vascular endothelium. Clinically, ARDS is defined by acute onset of hypoxemia, bilateral patchy pulmonary infiltrates and non-cardiogenic pulmonary edema. Human studies have provided us with valuable information about the physiological and inflammatory changes in the lung caused by ARDS, which has led to various hypotheses about the underling mechanisms. Unfortunately, difficulties determining the etiology of ARDS, as well as a wide range of pathophysiology have resulted in a lack of critical information that could be useful in developing therapeutic strategies.
Translational animal models are valuable when their pathogenesis and pathophysiology accurately reproduce a concept proven in both in vitro and clinical settings. Although large animal models (e.g., sheep) share characteristics of the anatomy of human trachea-bronchial tree, murine models provide a host of other advantages including: low cost; short reproductive cycle lending itself to greater data acquisition; a well understood immunologic system; and a well characterized genome leading to the availability of a variety of gene deletion and transgenic strains. A robust model of low pH induced ARDS requires a murine ALI that targets mainly the alveolar epithelium, secondarily the vascular endothelium, as well as the small airways leading to the alveoli. Furthermore, a reproducible injury with wide differences between different injurious and non-injurious insults is important.
The murine gastric acid aspiration model presented here using hydrochloric acid employs an open tracheostomy and recreates a pathogenic scenario that reproduces the low pH pneumonitis injury in humans. Additionally, this model can be used to examine interaction of a low pH insult with other pulmonary injurious entities (e.g., food particles, pathogenic bacteria).

This protocol induces acute lung injury in a mouse that has close fidelity to the pathogenesis of acid pneumonitis observed in humans. We generate a maximal acute nonlethal low pH lung injury and account for differences in rodent-human anatomic respiratory structure using an open tracheostomy coupled with circumferential pressure release.

Acid pneumonitis is a major cause of sterile acute lung injury (ALI) in humans. Acid pneumonitis spans the clinical spectrum from asymptomatic to acute ...

Studying the Hypothalamic Insulin Signal to Peripheral Glucose Intolerance with a Continuous Drug Infusion System into the Mouse Brain

Insulin regulates systematic metabolism in the hypothalamus and the peripheral insulin response. An inflammatory reaction in peripheral adipose tissues contributes to type 2 diabetes mellitus (T2DM) development and appetite regulation in the hypothalamus. Chemokine CCL5 and C-C chemokine receptor type 5 (CCR5) levels have been suggested to mediate arteriosclerosis and glucose intolerance in type 2 diabetes mellitus (T2DM). In addition, CCL5 plays a neuroendocrine role in the hypothalamus by regulating food intake and body temperature, thus, prompting us to investigate its function in hypothalamic insulin signaling and the regulation of peripheral glucose metabolism.
The micro-osmotic pump brain infusion system is a quick and precise way to manipulate CCL5 function and study its effect in the brain. It also provides a convenient alternative approach to generating a transgenic knockout animal. In this system, CCL5 signaling was blocked by intracerebroventricular (ICV) infusion of its antagonist, MetCCL5, using a micro-osmotic pump. The peripheral glucose metabolism and insulin responsiveness was detected by the Oral Glucose Tolerance Test (OGTT) and Insulin Tolerance Test (ITT). Insulin signaling activity was then analyzed by protein blot from tissue samples derived from the animals.
After 7-14 days of MetCCL5 infusion, the glucose metabolism and insulin responsiveness was impaired in mice, as seen in the results of the OGTT and ITT. The IRS-1 serine302 phosphorylation was increased and the Akt activity was reduced in mice hypothalamic neurons following CCL5 inhibition. Altogether, our data suggest that blocking CCL5 in the mouse brain increases the phosphorylation of IRS-1 S302 and interrupts hypothalamic insulin signaling, leading to a decrease in insulin function in peripheral tissues as well as the impairment of glucose metabolism.

This protocol studies the role of chemokine (C-C motif) ligand 5 (CCL5) in the hypothalamus by delivering an antagonist, MetCCL5, into the mouse brain using a micro-osmotic pump brain infusion system. This transient inhibition of CCL5 activity interrupted hypothalamic insulin signaling, leading to glucose intolerance and peripheral systemic insulin sensitivity.

Insulin regulates systematic metabolism in the hypothalamus and the peripheral insulin response. An inflammatory reaction in peripheral adipose tissues ...

Tracking Superparamagnetic Iron Oxide-labeled Mesenchymal Stem Cells using MRI after Intranasal Delivery in a Traumatic Brain Injury Murine Model

Stem cell-based therapies for brain injuries, such as traumatic brain injury (TBI), are a promising approach for clinical trials. However, technical hurdles such as invasive cell delivery and tracking with low transplantation efficiency remain challenges in translational stem-based therapy. This article describes an emerging technique for stem cell labeling and tracking based on the labeling of the mesenchymal stem cells (MSCs) with superparamagnetic iron oxide (SPIO)&#160;nanoparticles, as well as intranasal delivery of the labeled MSCs. These nanoparticles are fluorescein isothiocyanate (FITC)-embedded and safe to label the MSCs, which are subsequently delivered to the brains of TBI-induced mice by the intranasal route. They are then tracked non-invasively in vivo by real-time magnetic resonance imaging (MRI). Important advantages of this technique that combines SPIO for cell labeling and intranasal delivery include (1) non-invasive, in vivo MSC tracking after delivery for long tracking periods, (2) the possibility of multiple dosing regimens due to the non-invasive route of MSC delivery, and (3) possible applications to humans, owing to the safety of SPIO, non-invasive nature of the cell-tracking method by MRI, and route of administration.

Presented here is a protocol for non-invasive mesenchymal stem cell (MSC) delivery and tracking in a mouse model of traumatic brain injury. Superparamagnetic iron oxide&#160;nanoparticles are employed as a magnetic resonance imaging (MRI) probe for MSC labeling and non-invasive in vivo tracking following intranasal delivery using real-time MRI.

Stem cell-based therapies for brain injuries, such as traumatic brain injury (TBI), are a promising approach for clinical trials. However, technical ...