Laboratory of Microbiology
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Ammonia-oxidizing beta-proteobacteria from the oxygen minimum zone off northern Chile.
Applied and environmental microbiology Jun, 2007 | Pubmed ID: 17416686
Comparative in silico analysis of PCR primers suited for diagnostics and cloning of ammonia monooxygenase genes from ammonia-oxidizing bacteria.
FEMS microbiology ecology Apr, 2008 | Pubmed ID: 18248438
Evaluation of PCR primer selectivity and phylogenetic specificity by using amplification of 16S rRNA genes from betaproteobacterial ammonia-oxidizing bacteria in environmental samples.
Applied and environmental microbiology Aug, 2008 | Pubmed ID: 18567688
Comparative analysis of ammonia monooxygenase (amoA) genes in the water column and sediment-water interface of two lakes and the Baltic Sea.
FEMS microbiology ecology Nov, 2008 | Pubmed ID: 18721144
TRiFLe, a program for in silico terminal restriction fragment length polymorphism analysis with user-defined sequence sets.
Applied and environmental microbiology Oct, 2008 | Pubmed ID: 18757578
Community analysis of betaproteobacterial ammonia-oxidizing bacteria using the amoCAB operon.
Applied microbiology and biotechnology May, 2009 | Pubmed ID: 19274459
Metal reduction by spores of Desulfotomaculum reducens.
Environmental microbiology Dec, 2009 | Pubmed ID: 19601961
Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment.
Applied microbiology and biotechnology Jan, 2010 | Pubmed ID: 19830422
The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1.
Environmental microbiology Oct, 2010 | Pubmed ID: 20482743
Non-uraninite products of microbial U(VI) reduction.
Environmental science & technology Dec, 2010 | Pubmed ID: 21069950
Use of an isothermal microcalorimetry assay to characterize microbial oxalotrophic activity.
FEMS microbiology ecology Nov, 2011 | Pubmed ID: 21696406
Protection of Metal Artifacts with the Formation of Metal-Oxalates Complexes by Beauveria bassiana.
Frontiers in microbiology , 2011 | Pubmed ID: 22291684
Fungi, bacteria and soil pH: the oxalate-carbonate pathway as a model for metabolic interaction.
Environmental microbiology Nov, 2012 | Pubmed ID: 22928486
Quantification of endospore-forming firmicutes by quantitative PCR with the functional gene spo0A.
Applied and environmental microbiology Sep, 2013 | Pubmed ID: 23811505
Gains of bacterial flagellar motility in a fungal world.
Applied and environmental microbiology Nov, 2013 | Pubmed ID: 23995942
Identification of active oxalotrophic bacteria by Bromodeoxyuridine DNA labeling in a microcosm soil experiments.
FEMS microbiology letters Nov, 2013 | Pubmed ID: 24033776
Isolation of oxalotrophic bacteria able to disperse on fungal mycelium.
FEMS microbiology letters Nov, 2013 | Pubmed ID: 24106816
Bacterial farming by the fungus Morchella crassipes.
Proceedings. Biological sciences / The Royal Society Dec, 2013 | Pubmed ID: 24174111
Stage 0 sporulation gene A as a molecular marker to study diversity of endospore-forming Firmicutes.
Environmental microbiology reports Dec, 2013 | Pubmed ID: 24249300
Isolation and characterization of oxalotrophic bacteria from tropical soils.
Archives of microbiology Jan, 2015 | Pubmed ID: 25381572
Endospore-enriched sequencing approach reveals unprecedented diversity of Firmicutes in sediments.
Environmental microbiology reports Dec, 2014 | Pubmed ID: 25756117
Genome Sequence of Kosakonia radicincitans Strain YD4, a Plant Growth-Promoting Rhizobacterium Isolated from Yerba Mate (Ilex paraguariensis St. Hill.).
Genome announcements , 2015 | Pubmed ID: 25838492
Under-detection of endospore-forming Firmicutes in metagenomic data.
Computational and structural biotechnology journal , 2015 | Pubmed ID: 25973144
Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species.
Genome announcements , 2015 | Pubmed ID: 26067952
MLgsc: A Maximum-Likelihood General Sequence Classifier.
PloS one , 2015 | Pubmed ID: 26148002
Genome Sequence of Aeribacillus pallidus Strain GS3372, an Endospore-Forming Bacterium Isolated in a Deep Geothermal Reservoir.
Genome announcements , 2015 | Pubmed ID: 26316637
Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent.
Genome announcements , 2015 | Pubmed ID: 26316638
Exploiting the fungal highway: development of a novel tool for the in situ isolation of bacteria migrating along fungal mycelium.
FEMS microbiology ecology Nov, 2015 | Pubmed ID: 26432804
Metaproteomics and ultrastructure characterization of Komagataeibacter spp. involved in high-acid spirit vinegar production.
Food microbiology May, 2016 | Pubmed ID: 26742622
Diversity and ecology of oxalotrophic bacteria.
World journal of microbiology & biotechnology Feb, 2016 | Pubmed ID: 26748805
Effect of organic carbon and metal accumulation on the bacterial communities in sulphidogenic sediments.
Environmental science and pollution research international Jan, 2016 | Pubmed ID: 26780045
Anoxybacillusgeothermalis sp. nov., a facultatively anaerobic, endospore-forming bacterium isolated from mineral deposits in a geothermal station.
International journal of systematic and evolutionary microbiology Aug, 2016 | Pubmed ID: 27126386
An in situ inventory of fungi and their associated migrating bacteria in forest soils using fungal highway columns.
FEMS microbiology ecology Jan, 2017 | Pubmed ID: 27797964
A Combination of Extreme Environmental Conditions Favor the Prevalence of Endospore-Forming Firmicutes.
Frontiers in microbiology , 2016 | Pubmed ID: 27857706
Use of Bacteria To Stabilize Archaeological Iron.
Applied and environmental microbiology May, 2017 | Pubmed ID: 28283522
Fungal Biorecovery of Gold From E-waste.
Advances in applied microbiology , 2017 | Pubmed ID: 28438268
Microbial biotechnology approaches to mitigating the deterioration of construction and heritage materials.
Microbial biotechnology Sep, 2017 | Pubmed ID: 28771996
A historical legacy of antibiotic utilization on bacterial seed banks in sediments.
PeerJ , 2018 | Pubmed ID: 29312823
Bacterial iron reduction and biogenic mineral formation for the stabilisation of corroded iron objects.
Scientific reports Jan, 2018 | Pubmed ID: 29335593
Bacterial-fungal interactions: ecology, mechanisms and challenges.
FEMS microbiology reviews May, 2018 | Pubmed ID: 29471481
Dissemination of antibiotic resistance genes associated with the sporobiota in sediments impacted by wastewater.
PeerJ , 2018 | Pubmed ID: 29942682
Remedial Treatment of Corroded Iron Objects by Environmental Isolates.
Applied and environmental microbiology Feb, 2019 | Pubmed ID: 30478230
Oxalic acid, a molecule at the crossroads of bacterial-fungal interactions.
Advances in applied microbiology , 2019 | Pubmed ID: 30798804
Bacterial spores, from ecology to biotechnology.
Advances in applied microbiology , 2019 | Pubmed ID: 30798805
Adaptive Strategies in a Poly-Extreme Environment: Differentiation of Vegetative Cells in and Resistance to Extreme Conditions.
Frontiers in microbiology , 2019 | Pubmed ID: 30804904
Effect of Organic Carbon and Nitrogen on the Interactions of spp. and Bacteria Dispersing on Their Mycelium.
Frontiers in microbiology , 2019 | Pubmed ID: 30881350
Comparison of the plant growth-promotion performance of a consortium of Bacilli inoculated as endospores or as vegetative cells.
FEMS microbiology ecology Nov, 2019 | Pubmed ID: 31614367
The wild-type flagellar filament of the Firmicute Kurthia at 2.8 Å resolution in vivo.
Scientific reports Oct, 2019 | Pubmed ID: 31628388
Metabolic processes applied to endangered metal and wood heritage objects: Call a microbial plumber!
New biotechnology May, 2020 | Pubmed ID: 31706044
SpeciesPrimer: a bioinformatics pipeline dedicated to the design of qPCR primers for the quantification of bacterial species.
PeerJ , 2020 | Pubmed ID: 32110486
Investigation of Biogenic Passivating Layers on Corroded Iron.
Materials (Basel, Switzerland) Mar, 2020 | Pubmed ID: 32155722
Visualizing the invisible: class excursions to ignite children's enthusiasm for microbes.
Microbial biotechnology Jul, 2020 | Pubmed ID: 32406115
Democratization of fungal highway columns as a tool to investigate bacteria associated with soil fungi.
FEMS microbiology ecology Feb, 2021 | Pubmed ID: 33440006
Development of a High-Throughput Microfluidic qPCR System for the Quantitative Determination of Quality-Relevant Bacteria in Cheese.
Frontiers in microbiology , 2020 | Pubmed ID: 33488561
A versatile microfluidic platform measures hyphal interactions between Fusarium graminearum and Clonostachys rosea in real-time.
Communications biology 02, 2021 | Pubmed ID: 33637874
Functional Diversity of the Litter-Associated Fungi from an Oxalate-Carbonate Pathway Ecosystem in Madagascar.
Microorganisms May, 2021 | Pubmed ID: 34062900
Soluble and solid iron reduction assays with .
Bio-protocol Sep, 2018 | Pubmed ID: 34395795
Widespread bacterial diversity within the bacteriome of fungi.
Communications biology Oct, 2021 | Pubmed ID: 34621007
High-throughput qPCR and 16S rRNA gene amplicon sequencing as complementary methods for the investigation of the cheese microbiota.
BMC microbiology Feb, 2022 | Pubmed ID: 35130830
Spores-on-a-chip: new frontiers for spore research.
Trends in microbiology Jun, 2022 | Pubmed ID: 35346553
Recent Advances in Fungal Infections: From Lung Ecology to Therapeutic Strategies With a Focus on .
Frontiers in medicine , 2022 | Pubmed ID: 35386908
Advances and Challenges in Fluorescence Hybridization for Visualizing Fungal Endobacteria.
Frontiers in microbiology , 2022 | Pubmed ID: 35722318
Complete Genome Sequences of the Soil Oxalotrophic Bacterium Cupriavidus oxalaticus Strain Ox1 and Its Derived mCherry-Tagged Strain.
Microbiology resource announcements Sep, 2022 | Pubmed ID: 35924938
Importance of appropriate genome information for the design of mating type primers in black and yellow morel populations.
IMA fungus Aug, 2022 | Pubmed ID: 35996182
Fungi-on-a-Chip: microfluidic platforms for single-cell studies on fungi.
FEMS microbiology reviews Nov, 2022 | Pubmed ID: 36001464
Design and construction of 3D printed devices to investigate active and passive bacterial dispersal on hydrated surfaces.
BMC biology Sep, 2022 | Pubmed ID: 36104696
Spatial scales of competition and a growth-motility trade-off interact to determine bacterial coexistence.
Royal Society open science Dec, 2022 | Pubmed ID: 36483758
Cryptosporulation in Kurthia spp. forces a rethinking of asporogenesis in Firmicutes.
Environmental microbiology Dec, 2022 | Pubmed ID: 36530021
Editorial: Microbial ecology and ecosystems from a Southern perspective.
Frontiers in microbiology , 2022 | Pubmed ID: 36545206
Diversity of Lysis-Resistant Bacteria and Archaea in the Polyextreme Environment of Salar de Huasco.
Frontiers in microbiology , 2022 | Pubmed ID: 36687602
Multiple roads lead to Rome: unique morphology and chemistry of endospores, exospores, myxospores, cysts and akinetes in bacteria.
Microbiology (Reading, England) Feb, 2023 | Pubmed ID: 36804869
Assessment of fungal spores and spore-like diversity in environmental samples by targeted lysis.
BMC microbiology Mar, 2023 | Pubmed ID: 36918804
Nutrients and flow shape the cyclic dominance games between strains.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences May, 2023 | Pubmed ID: 36934746
The endohyphal microbiome: current progress and challenges for scaling down integrative multi-omic microbiome research.
Microbiome Aug, 2023 | Pubmed ID: 37626434
Direct evidence for the role of microbial community composition in the formation of soil organic matter composition and persistence.
ISME communications Nov, 2021 | Pubmed ID: 37938272
Fungal drops: a novel approach for macro- and microscopic analyses of fungal mycelial growth.
microLife , 2023 | Pubmed ID: 37965130
Associated bacterial communities, confrontation studies, and comparative genomics reveal important interactions between with spp.
Frontiers in fungal biology , 2023 | Pubmed ID: 38155707
Host and nonhost bacteria support bacteriophage dissemination along mycelia and abiotic dispersal networks.
microLife , 2024 | Pubmed ID: 38463165
Complete genome sequence of strain Ins1, a spore-forming filamentous bacterium isolated from a deep geothermal reservoir.
Microbiology resource announcements Apr, 2024 | Pubmed ID: 38477458
Gamification as a tool to teach key concepts in microbiology to bachelor-level students in biology: a case study using microbial interactions and soil functioning.
Access microbiology , 2024 | Pubmed ID: 38482366
A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society.
Microbial biotechnology May, 2024 | Pubmed ID: 38801001
Using a Centroid-based approach for a reliable identification of morels (Morchella spp.): A case study for food authentication.
Journal of food science Aug, 2024 | Pubmed ID: 38955792
Temporal and spatial changes in the abundance of antibiotic resistance gene markers in a wastewater treatment plant.
Water environment research : a research publication of the Water Environment Federation Aug, 2024 | Pubmed ID: 39164119
Fabricated devices for performing bacterial-fungal interaction experiments across scales.
Frontiers in microbiology , 2024 | Pubmed ID: 39171270
A cohesive strain cluster causes benthic cyanotoxic blooms in rivers worldwide.
Water research X Sep, 2024 | Pubmed ID: 39308956
Visualizing liquid distribution across hyphal networks with cellular resolution.
Biomicrofluidics Sep, 2024 | Pubmed ID: 39381835
A new species of true morel from Switzerland: , sp. nov.
Mycologia , 2024 | Pubmed ID: 39423308
One-Step Soft Agar Enrichment and Isolation of Human Lung Bacteria Inhibiting the Germination of Conidia.
Microorganisms Oct, 2024 | Pubmed ID: 39458334
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