Automated Sholl Analysis of Digitized Neuronal Morphology at Multiple Scales

0:20

Introduction

1:20

Preparations for Automated Sholl Analysis

2:14

Tracing Neurons in NeuronJ

4:52

Using Bonfire to Build Preliminary .swc Files from NeuronJ Data

6:27

Using NeuronStudio to Finalize .swc Files

7:57

Using 'bonfire' to Extract Morphological Data and 'bonfire_results' to View the Data

9:06

Using 'bonfire_export' to Export Data into Excel

11:21

Conclusion