Department of Biochemistry and Molecular Biology,
Biomedicine Discovery Institute,
Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute
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MUSTANG-MR structural sieving server: applications in protein structural analysis and crystallography.
PloS one Apr, 2010 | Pubmed ID: 20386610
CLIMS: crystallography laboratory information management system.
Acta crystallographica. Section D, Biological crystallography Sep, 2004 | Pubmed ID: 15333956
PFD: a database for the investigation of protein folding kinetics and stability.
Nucleic acids research Jan, 2005 | Pubmed ID: 15608196
The high resolution crystal structure of the human tumor suppressor maspin reveals a novel conformational switch in the G-helix.
The Journal of biological chemistry Jun, 2005 | Pubmed ID: 15760906
The 2.1A crystal structure of the far-red fluorescent protein HcRed: inherent conformational flexibility of the chromophore.
Journal of molecular biology May, 2005 | Pubmed ID: 15876379
REFOLD: an analytical database of protein refolding methods.
Protein expression and purification Mar, 2006 | Pubmed ID: 16150607
Control of the coagulation system by serpins. Getting by with a little help from glycosaminoglycans.
The FEBS journal Oct, 2005 | Pubmed ID: 16176258
T cell receptor recognition of a 'super-bulged' major histocompatibility complex class I-bound peptide.
Nature immunology Nov, 2005 | Pubmed ID: 16186824
Managing and mining protein crystallization data.
Proteins Jan, 2006 | Pubmed ID: 16287081
The REFOLD database: a tool for the optimization of protein expression and refolding.
Nucleic acids research Jan, 2006 | Pubmed ID: 16381847
An overview of the serpin superfamily.
Genome biology , 2006 | Pubmed ID: 16737556
X-ray crystal structure of MENT: evidence for functional loop-sheet polymers in chromatin condensation.
The EMBO journal Jul, 2006 | Pubmed ID: 16810322
Protein Folding Database (PFD 2.0): an online environment for the International Foldeomics Consortium.
Nucleic acids research Jan, 2007 | Pubmed ID: 17170010
The 1.6 A crystal structure of the catalytic domain of PlyB, a bacteriophage lysin active against Bacillus anthracis.
Journal of molecular biology Feb, 2007 | Pubmed ID: 17182056
GABA production by glutamic acid decarboxylase is regulated by a dynamic catalytic loop.
Nature structural & molecular biology Apr, 2007 | Pubmed ID: 17384644
The N terminus of the serpin, tengpin, functions to trap the metastable native state.
EMBO reports Jul, 2007 | Pubmed ID: 17557112
A common fold mediates vertebrate defense and bacterial attack.
Science (New York, N.Y.) Sep, 2007 | Pubmed ID: 17717151
X-ray crystal structure of the fibrinolysis inhibitor alpha2-antiplasmin.
Blood Feb, 2008 | Pubmed ID: 18063751
COOH-terminal clustering of autoantibody and T-cell determinants on the structure of GAD65 provide insights into the molecular basis of autoreactivity.
Diabetes May, 2008 | Pubmed ID: 18184926
A structural basis for loop C-sheet polymerization in serpins.
Journal of molecular biology Mar, 2008 | Pubmed ID: 18234218
The MACPF/CDC family of pore-forming toxins.
Cellular microbiology Sep, 2008 | Pubmed ID: 18564372
Federated repositories of X-ray diffraction images.
Acta crystallographica. Section D, Biological crystallography Jul, 2008 | Pubmed ID: 18566516
Structural basis for the inhibition of the essential Plasmodium falciparum M1 neutral aminopeptidase.
Proceedings of the National Academy of Sciences of the United States of America Feb, 2009 | Pubmed ID: 19196988
Structure of granzyme C reveals an unusual mechanism of protease autoinhibition.
Proceedings of the National Academy of Sciences of the United States of America Apr, 2009 | Pubmed ID: 19299505
Structural biology of the GAD autoantigen.
Autoimmunity reviews Jan, 2010 | Pubmed ID: 19465164
Prodepth: predict residue depth by support vector regression approach from protein sequences only.
PloS one Sep, 2009 | Pubmed ID: 19759917
Structural determinants of GAD antigenicity.
Molecular immunology Dec, 2009 | Pubmed ID: 19783309
Structure of the Plasmodium falciparum M17 aminopeptidase and significance for the design of drugs targeting the neutral exopeptidases.
Proceedings of the National Academy of Sciences of the United States of America Feb, 2010 | Pubmed ID: 20133789
The X-ray crystal structure of Escherichia coli succinic semialdehyde dehydrogenase; structural insights into NADP+/enzyme interactions.
PloS one Feb, 2010 | Pubmed ID: 20174634
MrGrid: a portable grid based molecular replacement pipeline.
PloS one Apr, 2010 | Pubmed ID: 20386612
EGM: encapsulated gene-by-gene matching to identify gene orthologs and homologous segments in genomes.
Bioinformatics (Oxford, England) Sep, 2010 | Pubmed ID: 20581400
Characterisation of peptide microarrays for studying antibody-antigen binding using surface plasmon resonance imagery.
PloS one Aug, 2010 | Pubmed ID: 20730101
PolyQ: a database describing the sequence and domain context of polyglutamine repeats in proteins.
Nucleic acids research Jan, 2011 | Pubmed ID: 21059684
An analysis of the cross-reactivity of autoantibodies to GAD65 and GAD67 in diabetes.
PloS one Apr, 2011 | Pubmed ID: 21494613
Crystallographic and molecular dynamics analysis of loop motions unmasking the peptidoglycan-binding site in stator protein MotB of flagellar motor.
PloS one Apr, 2011 | Pubmed ID: 21533052
Mastering the canonical loop of serine protease inhibitors: enhancing potency by optimising the internal hydrogen bond network.
PloS one Apr, 2011 | Pubmed ID: 21556330
Refolding your protein with a little help from REFOLD.
Methods in molecular biology (Clifton, N.J.) , 2011 | Pubmed ID: 21713630
The rate of polyQ-mediated aggregation is dramatically affected by the number and location of surrounding domains.
Journal of molecular biology Nov, 2011 | Pubmed ID: 21945530
Computational methods for studying serpin conformational change and structural plasticity.
Methods in enzymology , 2011 | Pubmed ID: 22078540
Recombinant protein quality evaluation: proposal for a minimal information standard.
Standards in genomic sciences Nov, 2011 | Pubmed ID: 22180821
Epitope flexibility and dynamic footprint revealed by molecular dynamics of a pMHC-TCR complex.
PLoS computational biology , 2012 | Pubmed ID: 22412359
Hybrid approaches to molecular simulation.
Current opinion in structural biology Jun, 2012 | Pubmed ID: 22633678
Conformational properties of the disease-causing Z variant of α1-antitrypsin revealed by theory and experiment.
Biophysical journal Jun, 2012 | Pubmed ID: 22735536
Crystal, solution and in silico structural studies of dihydrodipicolinate synthase from the common grapevine.
PloS one , 2012 | Pubmed ID: 22761676
X-ray crystal structure of the streptococcal specific phage lysin PlyC.
Proceedings of the National Academy of Sciences of the United States of America Jul, 2012 | Pubmed ID: 22807482
Structural characterization of the mechanism through which human glutamic acid decarboxylase auto-activates.
Bioscience reports Jan, 2013 | Pubmed ID: 23126365
Molecular determinants of the substrate specificity of the complement-initiating protease, C1r.
The Journal of biological chemistry May, 2013 | Pubmed ID: 23589288
A redundant role of human thyroid peroxidase propeptide for cellular, enzymatic, and immunological activity.
Thyroid : official journal of the American Thyroid Association Feb, 2014 | Pubmed ID: 23668778
Membrane proteins of Pseudoalteromonas tunicata during the transition from planktonic to extracellular matrix-adherent state.
Environmental microbiology reports Jun, 2011 | Pubmed ID: 23761287
Interactive visualization tools for the structural biologist.
Journal of applied crystallography Oct, 2013 | Pubmed ID: 24068844
PLP-dependent enzymes.
BioMed research international , 2014 | Pubmed ID: 24527459
The α-importome of mammalian germ cell maturation provides novel insights for importin biology.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology Aug, 2014 | Pubmed ID: 24790034
Cofactor-dependent conformational heterogeneity of GAD65 and its role in autoimmunity and neurotransmitter homeostasis.
Proceedings of the National Academy of Sciences of the United States of America Jun, 2014 | Pubmed ID: 24927554
Oxidation of an Exposed Methionine Instigates the Aggregation of Glyceraldehyde-3-Phosphate Dehydrogenase.
The Journal of biological chemistry Aug, 2014 | Pubmed ID: 25086035
Operation of the Australian Store.Synchrotron for macromolecular crystallography.
Acta crystallographica. Section D, Biological crystallography Oct, 2014 | Pubmed ID: 25286837
Understanding the structural dynamics of TCR-pMHC complex interactions.
Trends in immunology 12, 2014 | Pubmed ID: 25466310
Structural and dynamic properties that govern the stability of an engineered fibronectin type III domain.
Protein engineering, design & selection : PEDS Mar, 2015 | Pubmed ID: 25691761
Solution structure of a soluble fragment derived from a membrane protein by shotgun proteolysis.
Protein engineering, design & selection : PEDS Oct, 2015 | Pubmed ID: 25877662
Critical evaluation of in silico methods for prediction of coiled-coil domains in proteins.
Briefings in bioinformatics Mar, 2016 | Pubmed ID: 26177815
Dynamic Motion and Communication in the Streptococcal C1 Phage Lysin, PlyC.
PloS one , 2015 | Pubmed ID: 26470022
Modelling of Thyroid Peroxidase Reveals Insights into Its Enzyme Function and Autoantigenicity.
PloS one , 2015 | Pubmed ID: 26623656
A colostrum trypsin inhibitor gene expressed in the Cape fur seal mammary gland during lactation.
Gene Mar, 2016 | Pubmed ID: 26639991
PolyQ 2.0: an improved version of PolyQ, a database of human polyglutamine proteins.
Database : the journal of biological databases and curation , 2016 | Pubmed ID: 26980520
KinetochoreDB: a comprehensive online resource for the kinetochore and its related proteins.
Database : the journal of biological databases and curation , 2016 | Pubmed ID: 26989151
Consensus protein design.
Protein engineering, design & selection : PEDS 07, 2016 | Pubmed ID: 27274091
Circumventing the stability-function trade-off in an engineered FN3 domain.
Protein engineering, design & selection : PEDS Nov, 2016 | Pubmed ID: 27578887
The role of protein dynamics in the evolution of new enzyme function.
Nature chemical biology Nov, 2016 | Pubmed ID: 27618189
Smoothing a rugged protein folding landscape by sequence-based redesign.
Scientific reports Sep, 2016 | Pubmed ID: 27667094
Direct and indirect mechanisms of KLK4 inhibition revealed by structure and dynamics.
Scientific reports 10, 2016 | Pubmed ID: 27767076
Structural reconstruction of protein ancestry.
Proceedings of the National Academy of Sciences of the United States of America 04, 2017 | Pubmed ID: 28356519
The Pu.1 target gene Zbtb11 regulates neutrophil development through its integrase-like HHCC zinc finger.
Nature communications 04, 2017 | Pubmed ID: 28382966
REFOLDdb: a new and sustainable gateway to experimental protocols for protein refolding.
BMC structural biology 04, 2017 | Pubmed ID: 28438161
Generation of AMBER force field parameters for zinc centres of M1 and M17 family aminopeptidases.
Journal of biomolecular structure & dynamics Aug, 2018 | Pubmed ID: 28782419
Laboratory evolution of protein conformational dynamics.
Current opinion in structural biology 06, 2018 | Pubmed ID: 29120734
Recognition by host nuclear transport proteins drives disorder-to-order transition in Hendra virus V.
Scientific reports 01, 2018 | Pubmed ID: 29321677
Previously Hidden Dynamics at the TCR-Peptide-MHC Interface Revealed.
Journal of immunology (Baltimore, Md. : 1950) 06, 2018 | Pubmed ID: 29728507
Substrate Locking Promotes Dimer-Dimer Docking of an Enzyme Antibiotic Target.
Structure (London, England : 1993) 07, 2018 | Pubmed ID: 29804823
Structural Capacitance in Protein Evolution and Human Diseases.
Journal of molecular biology 09, 2018 | Pubmed ID: 30111491
Catalytic diversity and cell wall binding repeats in the phage-encoded endolysins.
Molecular microbiology 12, 2018 | Pubmed ID: 30230642
Mapping the Pathway and Dynamics of Bestatin Inhibition of the Plasmodium falciparum M1 Aminopeptidase PfA-M1.
ChemMedChem 12, 2018 | Pubmed ID: 30318749
Thyroid Peroxidase as an Autoantigen in Hashimoto's Disease: Structure, Function, and Antigenicity.
Hormone and metabolic research = Hormon- und Stoffwechselforschung = Hormones et metabolisme Dec, 2018 | Pubmed ID: 30360003
Prostate Cancer Risk-Associated Single-Nucleotide Polymorphism Affects Prostate-Specific Antigen Glycosylation and Its Function.
Clinical chemistry 01, 2019 | Pubmed ID: 30538125
Integrating Experiment and Theory to Understand TCR-pMHC Dynamics.
Frontiers in immunology , 2018 | Pubmed ID: 30581442
Potent, multi-target serine protease inhibition achieved by a simplified β-sheet motif.
PloS one , 2019 | Pubmed ID: 30668585
Reactive centre loop dynamics and serpin specificity.
Scientific reports 03, 2019 | Pubmed ID: 30846766
Protein engineering: the potential of remote mutations.
Biochemical Society transactions 04, 2019 | Pubmed ID: 30902926
KLK4 Inhibition by Cyclic and Acyclic Peptides: Structural and Dynamical Insights into Standard-Mechanism Protease Inhibitors.
Biochemistry 05, 2019 | Pubmed ID: 31058493
Wavelength-Dependent Fluorescent Immunosensors via Incorporation of Polarity Indicators near the Binding Interface of Antibody Fragments.
Analytical chemistry 06, 2019 | Pubmed ID: 31117403
The Role of Conformational Dynamics in Abacavir-Induced Hypersensitivity Syndrome.
Scientific reports 07, 2019 | Pubmed ID: 31324847
Crystal structure of the inhibitor-free form of the serine protease kallikrein-4.
Acta crystallographica. Section F, Structural biology communications Aug, 2019 | Pubmed ID: 31397325
Denisovan, modern human and mouse TNFAIP3 alleles tune A20 phosphorylation and immunity.
Nature immunology 10, 2019 | Pubmed ID: 31534238
Strategies for Increasing Protein Stability.
Methods in molecular biology (Clifton, N.J.) , 2020 | Pubmed ID: 31612442
Ribosome Evolution and Structural Capacitance.
Frontiers in molecular biosciences , 2019 | Pubmed ID: 31803754
Structural Studies of Thyroid Peroxidase Show the Monomer Interacting With Autoantibodies in Thyroid Autoimmune Disease.
Endocrinology 02, 2020 | Pubmed ID: 32022847
Development and Differentiation in Monobodies Based on the Fibronectin Type 3 Domain.
Cells 03, 2020 | Pubmed ID: 32143310
Intrinsic limitations in mainstream methods of identifying network motifs in biology.
BMC bioinformatics Apr, 2020 | Pubmed ID: 32349657
Conformational diversity facilitates antibody mutation trajectories and discrimination between foreign and self-antigens.
Proceedings of the National Academy of Sciences of the United States of America 09, 2020 | Pubmed ID: 32855302
Impact of HLA-DR Antigen Binding Cleft Rigidity on T Cell Recognition.
International journal of molecular sciences Sep, 2020 | Pubmed ID: 32992915
Mutational and biophysical robustness in a pre-stabilized monobody.
The Journal of biological chemistry Feb, 2021 | Pubmed ID: 33617878
A Comprehensive Phylogenetic Analysis of the Serpin Superfamily.
Molecular biology and evolution Jun, 2021 | Pubmed ID: 33744972
High avidity drives the interaction between the streptococcal C1 phage endolysin, PlyC, with the cell surface carbohydrates of Group A Streptococcus.
Molecular microbiology Mar, 2021 | Pubmed ID: 33756056
Lovisa Dousha1,2,
Roleen Sharma1,2,
Steven Lim2,3,
James Ngui2,4,
Ashley M. Buckle5,
Paul T. King1,2
1Monash Lung and Sleep, Monash Medical Centre,
2Monash University Department of Medicine, Monash Medical Centre,
3Flow Cytometry Science Technology Platform, Francis Crick Institute,
4Clinical Immunology, Monash Medical Centre,
5Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University