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* These authors contributed equally
This paper presents methods for optogenetic manipulation in Drosophila melanogaster, utilizing CsChrimson and GtACR2 to activate and silence specific neurons. Four experiments are described to utilize optogenetics to explore thermotactic and gustatory behaviors, providing insights into the underlying neural mechanisms governing these processes.
Optogenetics has become a fundamental technique in neuroscience, enabling precise control of neuronal activity through light stimulation. This study introduces easy-to-implement setups for applying optogenetic methods in Drosophila melanogaster. Two optogenetic tools, CsChrimson, a red-light-activated cation channel, and GtACR2, a blue-light-activated anion channel, were employed in four experimental approaches. Three of these approaches involve single-fly experiments: (1) a blue-light optogenetic thermotactic positional preference assay targeting temperature-sensitive heating cells, (2) a red-light optogenetic positional preference assay activating bitter sensing neurons, and (3) a proboscis extension response assay activating the sweet-sensing neurons. The fourth approach (4) is a fly maze setup to assess avoidance behaviors using multiple flies. The ability to manipulate neural activity temporally and spatially offers powerful insights into sensory processing and decision-making, underscoring the potential of optogenetics to advance our knowledge of neural function. These methods provide an accessible and robust framework for future research in neuroscience to enhance the understanding of specific neural pathways and their behavioral outcomes.
Optogenetics has emerged as a powerful technique combining optics and genetics in neuroscience, providing precise, non-invasive control over neural activity through light stimulation1. In Drosophila melanogaster, a widely used model organism, optogenetic tools enable the activation and inhibition of specific neurons, allowing researchers to modulate neural circuits. Among the tools used, CsChrimson and GtACR (Guillardia theta anion channel rhodopsins) provide complementary approaches for neuronal targeting. CsChrimson channelrhodopsin, a red-light sensitive cation channel from green algae, facilitates neuronal activation through depolarization when exposed to red light, with peak activation at approximately 590 nm2. CsChrimson offers better tissue penetration than previous channelrhodopsins and reduces light-induced behavioral artifacts in Drosophila studies2. In contrast, GtACR, which includes variants such as GtACR2, is a light-gated chloride channel that silences neurons through hyperpolarization3,4. GtACR2 conducts anions and is activated by blue light with a peak activation around 470 nm4. CsChrimson and GtACR2 are activated by distinct wavelengths of light, ensuring precise and independent control of neuronal activity without cross-activation5.
Drosophila is an effective model for neuroscience research due to its cost-effectiveness, ease of rearing, and robust behavioral responses to environmental stimuli, including attractive and avoidance behaviors6. Its small size and semi-transparent cuticle enhance the penetration of light, especially long-wavelength red light, enabling efficient optogenetic manipulation7,8. While Drosophila cells cannot produce sufficient retinal, a crucial cofactor for the functionality of channelrhodopsins, adding retinal to their diet compensates for this limitation, ensuring effective activation of optogenetic tools9.
To explore the effects of optogenetic manipulation in Drosophila, we describe four experiments targeting different neural circuits and behaviors, each utilizing distinct modalities to assess either avoidance or attractive responses, ranging from single-fly assays to group-based evaluations. Heating cells (HC) in Drosophila are thermosensory neurons located in the arista, responding to temperature increases10. These neurons express warm-sensitive ion channels that trigger avoidance behavior, guiding flies away from heat sources10,11. In approach 1, we employed a single-fly blue-light optogenetic thermotactic positional preference assay to manipulate HC neurons. By expressing GtACR2 in these neurons, we inhibited their activity upon blue-light exposure. Flies were exposed to two temperature options: 25 Β°C and 31 Β°C. Under room light, flies avoided the 31 Β°C side, demonstrating a typical thermotactic response. However, blue-light activation of GtACR2 silenced the HC neurons. As a result, flies showed no significant temperature preference, suggesting successful optogenetic inhibition. In addition to assessing the function of sensory neurons, the expression of GtACR2 in downstream sensory neurons enables similar optogenetic manipulations to study the neural circuits necessary for specific sensory modalities5.
The gustatory receptor GR66a in Drosophila is expressed in the labial palps at the distal end of the proboscis and in the legs, mediating bitter taste detection12,13. These neurons trigger avoidance behaviors in response to bitter substances. In approach 2, we used a single-fly red-light optogenetic positional preference assay to manipulate GR66a-expressing neurons. By expressing CsChrimson in these neurons, we activated them upon red-light exposure. Flies were placed in an arena with one half exposed to red light and the other half filtering red light. In the absence of red light, flies showed no preference. However, red-light activation of CsChrimson stimulated the bitter-sensing neurons, resulting in significant avoidance of the illuminated area, confirming successful optogenetic activation of GR66a neurons. Similar approaches have been used to identify the downstream circuits of heating cells sufficient for the avoidance behavior5.
We focused on optogenetic activation of appetitive behavior in approach 3. GR5a-expressing neurons, located in the taste sensilla on the labellum and legs, detect sugars and drive feeding behavior. Activation of these neurons triggers the proboscis extension response (PER)14. We used a red-light optogenetic proboscis extension response assay to activate GR5a neurons. By expressing CsChrimson in these neurons, we stimulated them with red light. Flies did not extend their proboscis under room-light conditions. However, red-light activation of CsChrimson led to proboscis extension without a sweet stimulus, demonstrating successful optogenetic activation of GR5a neurons. This approach has been used to investigate the neural circuit, including gustatory sensory neurons, taste projection neurons, and proboscis motor neurons15,16.
In approach 4, we investigated optogenetic activation of avoidance behaviors in groups of flies, using a red-light optogenetic fly maze assayΒ targeting GR66a neurons. Flies were placed at the intersection of two tubes: one illuminated with red light and the other shaded. CsChrimson expression in GR66a neurons triggered avoidance. In the absence of red light, flies showed no preference, but red-light activation led GR66a-expressing flies to avoid red light, suggesting the successful activation of the pathway. Fly maze assays have been widely used to study various sensory modalities, including temperature, humidity, and olfaction. When combined with optogenetics, this approach is powerful for investigating both attractive and avoidance behaviors17,18,19.
These methods provide a reproducible framework for studying optogenetic activation and inhibition of Drosophila neural circuits. By utilizing a combination of different channelrhodopsins and accessible behavioral assays, this proof-of-concept study demonstrates the effectiveness of optogenetic manipulation, providing straightforward methods to manipulate neural circuit functions with potential broader applications in neuroscience research.
1. Strains, fly rearing, and fly aspirator
2. Single-fly blue-light optogenetic thermotactic positional preference assay
3. Single-fly red-light optogenetic positional preference assay
4. Red-light optogenetic proboscis extension response
5. Red-light optogenetic fly maze assay
Single-fly blue-light optogenetic thermotactic positional preference assay
Four conditions were tested: room light with no ATR supplementation (room light, ATR -), room light with ATR supplementation (room light, ATR +), blue light with no ATR supplementation (blue, ATR -), and blue light with ATR supplementation (blue, ATR +). The first three conditions served as controls. In control experiments, flies avoided the 31 Β°C side. In blue light with ATR supplementation, flies exhibited no preferen...
Optogenetic manipulation has transformed the field of neuroscience by enabling precise control of neural circuits with spatiotemporal accuracy27. A neural circuit includes populations of neurons interconnected by synapses, performing specific functions upon activation. The Drosophila whole-brain connectome has been completed, offering comprehensive insights into the synaptic pathways within the Drosophila brain28,29. Whil...
The authors declare that there are no conflicts of interest regarding the publication of this article. All authors have disclosed any potential conflicts and affirm that they have no financial or personal relationships that could influence the work presented in this study.
Schematic diagrams for all figures were created with Biorender.com. This work was supported by NIH R01GM140130 (https://www.nigms.nih.gov/) to L.N. The funders had no role in the study design, data collection and analysis, publication decision, or manuscript preparation.
Name | Company | Catalog Number | Comments |
1000 mA LED driver | Luxeon Star | 3021-D-E-1000 | |
5 mL VWR Culture Tubes, Plastic, with Dual-Position Caps | VWR | 60818-664 | |
780 Longpass Filter / IR 780 nm 100 mm x 100 mm | Lee Filters | BH #LE8744 | Cut to approximately 47 x 100 fit the plastic cover |
Agfabric 6.5 ft. x 15 ft. Insect Bug Netting Garden Net for Protecting Plants Vegetables Flowers Fruits | The Home Depot | EIBNW6515 | |
All trans retinal | Sigma-Aldrich | 116-31-4 | |
Aluminum Plate (30.5 cm x 30.5 cm x 0.6 cm) | Amazon | purchased from Amazon | |
Black Plastic Box | LI-COR | 929-97101 | |
CALCIUM CHLORIDE ANHYDRO 25GR | Thermo Fisher ScientificΒ | AC297150250 | |
CX405 Handycam with Exmor R CMOS sensor | SONY | HDR-CX405 | |
Elmerβs βSchool Glueβ | Elmer | ||
Ethyl alcohol, Pure (200 Proof) | Sigma-Aldrich | E7023 | |
Fisherbrand Isotemp Hot Plate Stirrer | Fisher Scientific | SP88850200 | |
Fly line: Gr5a-Gal4 | Bloomington Drosophila Stock Center | 57592 | |
Fly line: Gr66a-Gal4 | Bloomington Drosophila Stock Center | 57670 | |
Fly line: HC-Gal4 (II) | Dr. Marco Gallio Lab | A kind gift | |
Fly line: UAS-CsChrimson | Bloomington Drosophila Stock Center | 55136 | |
Fly line: UAS-GtACR2/TM6B | Dr. Quentin Gaudry Lab | A kind gift | |
Flystuff 62-101 Yellow Cornmeal (11.3 Kg), Yellow, 11.3 Kg/Unit | Genesee Scientific | 62-101 | |
Flystuff 62-107 Inactive Dry Yeast, 10 Kg, Nutritional Flake, 10 Kg/Unit | Genesee Scientific | 62-107 | |
Flystuff 66-103 Nutri-Fly Drosophila Agar, Gelidium, 100 Mesh, 5 Kg (11.02 lbs)/Unit | Genesee Scientific | 66-103 | |
FreeMascot OD 8+ 190 nmβ420 nm / 600 nmβ1100 nm Wavelength Violet/Red/Infrared Laser Safety GlassesΒ | FreeMascotΒ | B08LGMQ65S | purchased from Amazon |
GoPro Hero8 Black | GoPro | 6365359 | |
LEE Filters 100Γ100 mm Infra Red #87 Infrared Polyester Filter | B&H Photo | LE8744 | |
Longpass Filter, Colored Glass, 50.8 x 50.8 mm, 830 nm Cut-on, RG830 | Newport | FSQ-RG830 | |
Methyl 4-hydroxybenzoate, 99%, Thermo Scientific Chemicals | Thermo Fisher ScientificΒ | 126960025 | |
MicroWell Mini Tray 60 Well, Low Profile NS PS | Thermal ScientificΒ | NUNC 439225 | The lids are used as the "plastic cover" |
Olympus Plastics 24-160RS, 1000 Β΅L Olympus Ergonomic Pipet Tips Low Binding, Racked, Sterile, 8 Racks of 96 Tips/Unit | Eppendorf | 24-160RS | |
Parafilm M Sealing Film | Heathrow Scientific | HS234526B | 4 in x 125 feet |
Potassium chloride, ACS, 99.0-100.5%,Β | Thermo Fisher ScientificΒ | AA1159530 | |
Prism | GraphPad | Version 9 | data analysis software |
Samco Graduated Transfer Pipettes | Thermo Fisher ScientificΒ | 225 | 3 mL |
Slides | Fisher Scientific | 12-544-2 | Β 5 mm x 75 mm x 1.0 mm |
Stereo microscope | OLYMPUS | CZ61 | |
Styrofoam box (27 cm height Γ 22 cm width Γ 16 cm length) | |||
Sucrose | Fisher Scientific | 225911 | |
Surface temperature probe | Fluke | 80PK-3A | |
Syringe | BD Integra | 305270 | |
Tate & Lyle 457 Dextrose, Tate & Lyle, Pow, Tate & Lyle 457 Dextrose, Tate & Lyle, Powder, 50 lbs/Unit | Genesee Scientific | 62-113 | |
Traceable Calibrated Big-Digit Thermocouple Thermometer | Traceable by cple-parmer | Β UX-91210-07 | Fisherbrand Traceable BigDigit Type K Thermometer |
Triple blue LED starboard | LEDSupply | 07007-PB000-D | 470 nm |
Triple red LED starboard | LEDSupply | 07007-PD000-F | 627 nm |
Tygon PVC Clear Tubing 1/4" ID, 3/8" OD, 5 ft. LengthΒ | McMaster Carr Supply CompanyΒ | 6516T21Β | |
Univivi IR Illuminator, 850nm 12 LEDs Wide Angle IR Illuminator for Night Vision | Univivi | 4331910725 | |
Wakefield Thermal 25.4 mm Round Heatsink Star LED Board - 882-100AB | Wakefield-Vette | 882-100AB | |
Wireless Presenter | DinoFire Store | B01410YNAM | purchased from Amazon |
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