Name: a simple planting technique for re-establishing trees where frequent inundation occurs
Uploaded: 2018-01-26T13:30:00
Description: Watch this Scientific Journal Video about A Simple Planting Technique for Re-establishing Trees Where Frequent Inundation Occurs at JoVE.com

This research was funded and conducted under the Everglades Systems Assessment Section of the South Florida Water Management District.

1. Preparation and Transportation to Planting Location
<ol>
	<li>Obtain 2 or 3 gal (7 or 11 L) saplings of locally grown native trees (in plastic pots), commercial peat bags (measuring 0.3 x 0.46 x 0.6 m3), tree and shrub fertilizer spikes, duct tape, polyvinyl chloride (PVC) pipe (2 to 3 m length, 0.8 in (2.1 cm) diameter, schedule 40), box cutter, trash bags, and a metal rod or rebar (1 to 2 m in length, 1.3 cm diameter) to puncture the peat bags. Potential tree species applicable to the Everglades are <em...

<ol>
	<li>Sklar, F. H., van der Valk, A. G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Tree Islands of the Everglades. , (2002).</li><li>Wetzel, P. R., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Maintaining+tree+islands+in+the+Florida+Everglades:+nutrient+redistribution+is+the+key.">Maintaining tree islands in the Florida Everglades: nutrient redistribution is the key.</a> Front Ecol Environ. 3 (7), 370-376 (2005).</li><li>Aich, S., Ewe, S. M. L., Gu, B., Dreschel, T. W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=An+evaluation+of+peat+loss+from+an+Everglades+tree+island,+Florida,+USA.">An evaluation of peat loss from an Everglades tree island, Florida, USA.</a> Mires and Peat. 14 (2014), 1-15 (2014).</li><li>Dreschel, T. W., Cline, E. A., Hill, S. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Everglades+tree+island+restoration:+testing+a+simple+tree+planting+technique+patterned+after+a+natural+process.">Everglades tree island restoration: testing a simple tree planting technique patterned after a natural process.</a> Restor Ecol. , (2017).</li><li>Stanturf, J. A., Conner, W. H., Gardiner, E. S., Schweitzer, C. J., Ezell, A. W. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Recognizing+and+Overcoming+Difficult+Site+Conditions+for+Afforestation+of+Bottomland+Hardwoods.">Recognizing and Overcoming Difficult Site Conditions for Afforestation of Bottomland Hardwoods.</a> Ecol Restor. 22 (3), 183-193 (2004).</li><li>Sharitz, R., Barton, C. D., DeSteven, D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Tree+Plantings+in+Depression+Wetland+Restorations+Show+Mixed+Success+(South+Carolina).">Tree Plantings in Depression Wetland Restorations Show Mixed Success (South Carolina).</a> Ecol Restor. 24 (2), 114-115 (2006).</li><li>Brandt, L. A., Portier, K. M., Kitchens, W. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Patterns+of+Change+in+Tree+Islands+in+Arthur+R.+Marshall+Loxahatchee+National+Wildlife+Refuge+from+1950-1991.">Patterns of Change in Tree Islands in Arthur R. Marshall Loxahatchee National Wildlife Refuge from 1950-1991.</a> Wetlands. 20 (1), 1-14 (2000).</li><li>Armentano, T. V., Jones, D. T., Ross, M. S., Gamble, B. W., Sklar, F. H., van der Valk, A. G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Vegetation+pattern+and+process+in+tree+islands+of+the+southern+Everglades+and+adjacent+areas.">Vegetation pattern and process in tree islands of the southern Everglades and adjacent areas.</a> Tree Islands of the Everglades. , 225-281 (2002).</li><li>Jones, D. T., Sah, J. P., Ross, M. S., Oberbauer, S. F., Hwang, B., Jayachandran, K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Growth+and+physiological+responses+of+twelve+tree+species+common+in+Everglades+tree+islands+to+simulated+hydrologic+regimes.">Growth and physiological responses of twelve tree species common in Everglades tree islands to simulated hydrologic regimes.</a> Wetlands. 26 (3), 830-844 (2006).</li><li>Stoffella, S. L., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Survival+and+growth+responses+of+eight+Everglades+tree+species+along+an+experimental+hydrological+gradient+on+two+tree+island+types.">Survival and growth responses of eight Everglades tree species along an experimental hydrological gradient on two tree island types.</a> Appl Veg Sci. 13 (4), 439-449 (2010).</li><li>Aich, S., Dreschel, T. W., Cline, E., Sklar, F. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+development+of+a+geographic+information+system+(GIS)+to+document+research+in+an+Everglades+physical+Model.">The development of a geographic information system (GIS) to document research in an Everglades physical Model.</a> J Environ Sci Eng. 5 (2011), 289-302 (2011).</li><li>Weinbaum, S. A., Johnson, R. S., DeJong, T. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Causes+and+Consequences+of+Overfertilization+in+Orchards.">Causes and Consequences of Overfertilization in Orchards.</a> HortTechnology. 2 (1), 112-121 (1992).</li></ol>

This proposed approach to replanting tree islands allows the increase in elevation and deployment of trees from an airboat without the building of roads required to bring fill to each site. This minimizes the cost and disturbance of implementing tree island plantings.
An issue with this technique is the aesthetic and environmental problems associated with putting a large quantity of PVC pipe, plastic bags, and plastic pots on a marsh feature that was once a tree island. The current approach is...

Natural recolonization of degraded Everglade tree islands by native tree species is possible through seed dispersal if there are nearby islands with a diversity of tree species1,2. According to Sklar and van der Valk1 restoring severely subsided tree islands may be possible, &#34;by raising the elevation of their heads, although such efforts would be expensive and labor intensive.&#34; Currently, there are very few native (desirable) trees present near the degraded (also known as &#34;ghost&#34;) tree islands in Everglades Water Conservation Area (WCA)-2A (one of five WCAs created to store water for and prevent flooding of surrounding urban and agricultural areas) to provide the seeds needed for recolonizing the degraded tree islands3.
To raise the elevation of a subsided tree island for reforestation, appropriate fill would have to be transported to the island. This would require building roads for trucks or creating waterways for barges, leading to severe damage to the Everglades at a great financial cost. A simple, low cost technique is needed to repopulate degraded tree islands with native tree species that will provide elevation (reduce hydroperiod) and improve survival under the variable hydrology endemic to the Everglades4.
The size of these pop-ups allows the ease of transportation to the planting site. This provides an advantage compared to conventional filling of areas and planting of trees which may require roads be built for transporting. This technique thus reduces the ecological impact of tree planting activity. Additionally, these pop-ups have the ability to float for the initial six months following deployment, to allow establishment of the sapling. Under conventional tree planting scenarios, the trees may experience increased flooding stress during establishment if water levels rise.
A number of designs were tested and it was determined that greater pop-up height (bag orientation), one tree fertilizer spike to add nutrients, and planting the pop-up with a single sapling achieved the best configuration for deployment upon an Everglade degraded tree island4. Although other researchers describe the planting of trees for restoring forested wetland areas5,6, to our knowledge, none of the planting techniques described added elevation to reduce hydroperiod.
This procedure mimics the formation of floating Everglades tree islands that arise from peat that breaks away from the bedrock and floats to the surface. Upland plants can establish to form a &#34;pop-up&#34; or floating tree island which eventually moves and settles onto the peat surface and becomes what is termed a &#34;battery&#34; tree island1,7.
Everglades tree island tree species have varying tolerances to flooding for growth and survival8,9,10. In a controlled study, Jones et al. demonstrated the importance of the hydroperiod to the survival of Everglades tree island species9. Stoffella et al. found that relative elevation (to the water surface) had varying and profound effects on planted native tree species survival and growth, due to the specific tolerance of each species to flooding10. Tree species can be selected for the specific conditions present. The tree planting technique described here can provide additional elevation and consequently, tree seed sources in formerly forested regions that have lost elevation and are now subject to an inundation environment that is harmful to native tree species.
Formerly forested regions that experience extended hydroperiods might benefit from this method to reintroduce woody species to these areas. This technique provides elevation, thus reducing the hydroperiod. In addition, the trees will build soil (root and leaf biomass) and provide a seed source for continued colonization of the area.

<table>
	<tbody>
		<tr>
			<td>One or Two Gallon Native Tree Saplings in plastic pots.</td>
			<td>Local Native Plant Nurseries</td>
			<td>N/A</td>
			<td>Obtain native tree saplings grown from locally obtained seed</td>
		</tr>
		<tr>
			<td>Commercial Peat Bags. 5 cubic ft.</td>
			<td>Lambert</td>
			<td>Lambert Canadian Sphagnum Peat Moss (6649801115)</td>
			<td>Product description: Lambert peat moss is an excellent soil amendment because of its capacity to retain water, aerate the soil and it is completely natural. All of Lambert&#39;s peat moss packages carry the OMRI (Organic Material Review Institute) logo, which indicates that they are approved for use in organic production. Size: 5.5 cu.ft.</td>
		</tr>
		<tr>
			<td>Vigoro Tree Spikes (Tree and Shrub Fertilizer Spikes, 15-Count)</td>
			<td>Vigoro, Swiss Farms Products Inc.</td>
			<td>Model # 154205</td>
			<td>GUARANTEED ANALYSIS (%) TOTAL IN PRODUCT (ppm): Total Nitrogen (N) 12.0000; Available Phosphoric Acid (P2O5) 5.0000; Soluble Potash (K2O) 7.0000</td>
		</tr>
		<tr>
			<td>PVC Pipe: 1/2 in schedule 40</td>
			<td>JM Eagle</td>
			<td>Model # 67447</td>
			<td>Any manufacturer or supplier will do.</td>
		</tr>
		<tr>
			<td>Duct Tape, 1-7/8 in x 12 yds</td>
			<td>MSC Industrial Supply</td>
			<td>Gorilla Heavy-Duty Duct Tape, Model# 60012</td>
			<td>Any manufacturer or supplier will do.</td>
		</tr>
		<tr>
			<td>Metal Rod (Rebar 1.3 cm diameter, 1.2 m long)</td>
			<td>Weyerhaeuser</td>
			<td>Model # 35616</td>
			<td>Any manufacturer or supplier will do.</td>
		</tr>
		<tr>
			<td>Box Cutter</td>
			<td>Stanley</td>
			<td>Model # STHT10273</td>
			<td>Any manufacturer or supplier will do.</td>
		</tr>
		<tr>
			<td>Work Gloves</td>
			<td>Firm Grip</td>
			<td>Model # 3101-96</td>
			<td>Any manufacturer or supplier will do.</td>
		</tr>
		<tr>
			<td>Trash Bags (42 gallon)</td>
			<td>HUSKY</td>
			<td>Model # HK42WC050B</td>
			<td>Any manufacturer or supplier will do.</td>
		</tr>
	</tbody>
</table>

a simple planting technique for re-establishing trees where frequent inundation occurs

Many of the Everglades tree islands have lost elevation over the past century and most of their trees have died such that they are now covered with herbaceous plants. This protocol describes a simple, cost-effective tree planting technique needed for restoring degraded Everglade tree islands. The design is patterned after a natural Everglades process that creates floating peat islands, which allows tree survival and growth in flooded conditions and often leads to the development of tree islands. Commercially available peat bags were used as the medium for the growth and establishment of potted native tree saplings. The pop-up configuration floated initially and provided additional elevation to minimize inundation, with a single native tree species sapling and a single tree fertilizer spike. During a 3 year study involving 105 pop-ups, most plants survived (80%) and many thrived. Determining whether this technique can establish trees on a degraded tree island will require longer studies and extensive field tests.

The study using this technique4 was conducted within a 0.32 km2 Everglades physical model11, on a ridge to simulate testing on a ghost tree island. During this study, two bag orientations for height (low: 0.3 m, high: 0.46 m), with one versus two saplings per bag growing, were tested as well as the use of tree fertilizer spikes to promote survival and growth. Three&#160;species of saplings were used: A. glabra, F. aur...

Watch this Scientific Journal Video about A Simple Planting Technique for Re-establishing Trees Where Frequent Inundation Occurs at JoVE.com

A Simple Planting Technique for Re-establishing Trees Where Frequent Inundation Occurs

This protocol describes a simple, cost-effective tree planting technique for restoring degraded Everglades tree islands that experience inundation. The design creates an island (pop-up) which floats initially and adds elevation to promote tree survival and growth under flooded conditions.

Many of the Everglades tree islands have lost elevation over the past century and most of their trees have died such that they are now covered with ...

The overall goal of this procedure is to provide a tree planting method for maximizing tree survival under slightly flooded conditions At a depth of half a meter of water or less, for up to one quarter of the year. This method can be a useful tool in restoration of collagen, particularly for the re-vegetation of flood impacted formally forested areas. The main advantage of this technique is that it provides additional elevation for the plant and its saplings.It minimizes flooding and maximizes nutrients for tree growth. Well we first had this idea for this method when we visited an Everglades Ghost Tree island to brainstorm methods for successfully replanting the island with trees. Demonstrating the procedure will be Fabiola Santamaria and Michele Blaha, scientists from our South Florida Water Management District Everglades Research Group.Before transporting the required equipment to the restoration planting site, obtain two or three gallon samplings of natively grown native trees and native pots, commercial peat bags, tree and shrub fertilized spikes, duct tape, PVC pipes, a box cutter, trash bags and a metal rod. Transport the materials to the planting site in an airboat. The water levels at the site should be adequate enough for maneuvering the floating pop ups, but shallow enough for wading.Wearing gloves, slide the plastic pot off of the roots and pot soil of the first sapling, and cut a large hole in the pot bottom. Slide the pot with the open bottom back onto the sapling roots, and use the box cutter to make a 20 to 30CM egg shaped cut into one peat bag, at the center of what will be the upper surface. Transfer about 2000 to 5000 cubic centimeters of the peat, about half the volume of the pot, from the cut into a trash bag.Place the sapling and the bottomless pot into the egg shaped opening. The bag should come about half way up the pot, with the points of the cut bag up against the sides of the pot. Secure the pot with several windings of duct tape around the pot and the bag triangles.Insert the two pieces of PVC pipe down through to the bottom of the bag, on either side of the pot. When the sapling has been secured enter the water, and have the pop-up handed down into the water. With the sapling in the vertical position move the floating pop-up to the planting site.Push the PVC pipe completely through the bag to a depth of approximately one third to one half meter into the soil below the bag to tether the pop-up in place. Poke the metal rod through the top, bottom and sides of the peat bag, to allow the water to enter the bag and to allow the roots to emerge. Finally, insert one tree fertilizer spike completely into the top of the bag.In saplings transplanted as just demonstrated the surface of the soil and the pots, and the punctures in the top surface of the peat bags provide sites for the colonization of herbaceous plants and ferns over the study period, with the saplings responding to the treatment as generally predicted. The planting of a single sapling per peat bag, oriented to provide a high profile and with one fertilizer spike, facilitated the greatest growth during the three year study. Depending upon the size of the crew, 50 or more pop-ups could be deployed in a normal eight hour work day.After watching this video you should have a good understanding of how to build and deploy a peat pop-up for the reforestation of flood impacted sites. Don't forget that working in aquatic and hot environments requires following safe field practices, including wearing the appropriate field gear and sunscreen. Taking precautions to prevent exposure and exhaustion and avoiding interactions with potentially dangerous wildlife.

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Research

JoVE Journal

Environment

Technique for Studying Arthropod and Microbial Communities within Tree Tissues

Phloem tissues of pine are habitats for many thousands of organisms. Arthropods and microbes use phloem and cambium tissues to seek mates, lay eggs, rear young, feed, or hide from natural enemies or harsh environmental conditions outside of the tree. Organisms that persist within the phloem habitat are difficult to observe given their location under bark. We provide a technique to preserve intact phloem and prepare it for experimentation with invertebrates and microorganisms. The apparatus is called a &#8216;phloem sandwich&#8217; and allows for the introduction and observation of arthropods, microbes, and other organisms. This technique has resulted in a better understanding of the feeding behaviors, life-history traits, reproduction, development, and interactions of organisms within tree phloem. The strengths of this technique include the use of inexpensive materials, variability in sandwich size, flexibility to re-open the sandwich or introduce multiple organisms through drilled holes, and the preservation and maintenance of phloem integrity. The phloem sandwich is an excellent educational tool for scientific discovery in both K-12 science courses and university research laboratories.

We provide a technique to preserve intact tree phloem and prepare it for observation. We create an apparatus called a phloem sandwich that allows for the introduction and observation of arthropods, microbes, and other organisms that inhabit phloem tissues.

Phloem tissues of pine are habitats for many thousands of organisms.  Arthropods and microbes use phloem and cambium tissues to seek mates, lay eggs, rear ...

A Venturi Effect Can Help Cure Our Trees

In woody plants, xylem sap moves upwards through the vessels due to a decreasing gradient of water potential from the groundwater to the foliage. According to these factors and their dynamics, small amounts of sap-compatible liquids (i.e. pesticides) can be injected into the xylem system, reaching their target from inside. This endotherapic method, called &#34;trunk injection&#34; or &#34;trunk infusion&#34; (depending on whether the user supplies an external pressure or not), confines the applied chemicals only within the target tree, thereby making it particularly useful in urban situations. The main factors limiting wider use of the traditional drilling methods are related to negative side effects of the holes that must be drilled around the trunk circumference in order to gain access to the xylem vessels beneath the bark.
The University of Padova (Italy) recently developed a manual, drill-free instrument with a small, perforated blade that enters the trunk by separating the woody fibers with minimal friction. Furthermore, the lenticular shaped blade reduces the vessels&#39; cross section, increasing sap velocity and allowing the natural uptake of an external liquid up to the leaves, when transpiration rate is substantial. Ports partially close soon after the removal of the blade due to the natural elasticity and turgidity of the plant tissues, and the cambial activity completes the healing process in few weeks.

Compared to the more traditional hole-based methods, most of which require the tree to be drilled, tools with lenticular blades transform the basics of endotherapy easing the closure of the wound and allowing the natural uptake of the solutions.

In woody plants, xylem sap moves upwards through the vessels due to a decreasing gradient of water potential from the groundwater to the foliage. ...

A Technique to Screen American Beech for Resistance to the Beech Scale Insect (Cryptococcus fagisuga Lind.)

Beech bark disease (BBD) results in high levels of initial mortality, leaving behind survivor trees that are greatly weakened and deformed.&#160;The disease is initiated by feeding activities of the invasive beech scale insect, Cryptococcus fagisuga, which creates entry points for infection by one of the Neonectria species of fungus.&#160;Without scale infestation, there is little opportunity for fungal infection. Using scale eggs to artificially infest healthy trees in heavily BBD impacted stands demonstrated that these trees were resistant to the scale insect portion of the disease complex1.&#160;Here we present a protocol that we have developed, based on the artificial infestation technique by Houston2, which can be used to screen for scale-resistant trees in the field and in smaller potted seedlings and grafts.&#160;The identification of scale-resistant trees is an important component of management of BBD through tree improvement programs and silvicultural manipulation.

A Technique to Screen American Beech for Resistance to the Beech Scale Insect Cryptococcus fagisuga Lind.

Beech bark disease is initiated by feeding activities of the beech scale insect that create fungal entry points in the bark.&#160;Trees that are resistant to the scale insect are also disease resistant.&#160;Here we present the protocol we have developed to screen individual beech trees for beech scale resistance.

Beech bark disease (BBD) results in high levels of initial mortality, leaving behind survivor trees that are greatly weakened and deformed.&#160;The ...

An Optimized Enrichment Technique for the Isolation of Arthrobacter Bacteriophage Species from Soil Sample Isolates

Bacteriophage isolation from environmental samples has been performed for decades using principles set forth by pioneers in microbiology. The isolation of phages infecting Arthrobacter hosts has been limited, perhaps due to the low success rate of many previous isolation techniques, resulting in an underrepresented group of Arthrobacter phages available for study. The enrichment technique described here, unlike many others, uses a filtered extract free of contaminating bacteria as the base for indicator bacteria growth, Arthrobactersp. KY3901, specifically. By first removing soil bacteria the target phages are not hindered by competition with native soil bacteria present in initial soil samples. This enrichment method has resulted in dozens of unique phages from several different soil types and even produced different types of phages from the same enriched soil sample isolate. The use of this procedure can be expanded to most nutrient rich aerobic media for the isolation of phages in a vast diversity of interesting host bacteria.

An Optimized Enrichment Technique for the Isolation of Arthrobacter Bacteriophage Species from Soil Sample Isolates

We present an enrichment protocol for the isolation of bacteriophages infecting bacteria in the Arthrobacter genus. This enrichment protocol produces fast and reproducible results for the isolation and amplification of Arthrobacter phages from soil isolates.

Bacteriophage isolation from environmental samples has been performed for decades using principles set forth by pioneers in microbiology. The isolation of ...

A Simple Method for Automated Solid Phase Extraction of Water Samples for Immunological Analysis of Small Pollutants

A new method for solid phase extraction (SPE) of environmental water samples is proposed. The developed prototype is cost-efficient and user friendly, and enables to perform rapid, automated and simple SPE. The pre-concentrated solution is compatible with analysis by immunoassay, with a low organic solvent content. A method is described for the extraction and pre-concentration of natural hormone 17&#946;-estradiol in 100 ml water samples. Reverse phase SPE is performed with octadecyl-silica sorbent and elution is done with 200 &#181;l of methanol 50% v/v. Eluent is diluted by adding di-water to lower the amount of methanol. After preparing manually the SPE column, the overall procedure is performed automatically within 1 hr. At the end of the process, estradiol concentration is measured by using a commercial enzyme-linked immune-sorbent assay (ELISA). 100-fold pre-concentration is achieved and the methanol content in only 10% v/v. Full recoveries of the molecule are achieved with 1 ng/L spiked de-ionized and synthetic sea water samples.

A protocol for the extraction and pre-concentration of estradiol from water samples by using an automated and miniaturized system is presented.

A new method for solid phase extraction (SPE) of environmental water samples is proposed. The developed prototype is cost-efficient and user friendly, and ...

A Simple Approach to Manipulate Dissolved Oxygen for Animal Behavior Observations

The ability to manipulate dissolved oxygen (DO) in a laboratory setting has significant application to investigate a number of ecological and organismal behavior questions. The protocol described here provides a simple, reproducible, and controlled method to manipulate DO to study behavioral response in aquatic organisms resulting from hypoxic and anoxic conditions. While performing degasification of water with nitrogen is commonly used in laboratory settings, no explicit method for ecological (aquatic) application exists in the literature, and this protocol is the first to describe a protocol to degasify water to observe organismal response. This technique and protocol were developed for direct application for aquatic macroinvertebrates; however, small fish, amphibians, and other aquatic vertebrates could be easily substituted. It allows for easy manipulation of DO levels ranging from 2 mg/L to 11 mg/L with stability for up to a 5 min animal-observation period. Beyond a 5 min observation period water temperatures began to rise, and at 10 min DO levels became too unstable to maintain. The protocol is scalable to the study organism, reproducible, and reliable, allowing for rapid implementation into introductory teaching labs and high-level research applications. The expected results of this technique should relate dissolved oxygen changes to behavioral responses of organisms.

This article describes a simple and reproducible protocol to manipulate dissolved oxygen conditions in a laboratory setting for animal behavior studies. This protocol may be used in both teaching and research laboratory settings to evaluate organismal response of macroinvertebrates, fishes, or amphibians to changes in dissolved oxygen concentration.

The ability to manipulate dissolved oxygen (DO) in a laboratory setting has significant application to investigate a number of ecological and organismal ...

Soil Lysimeter Excavation for Coupled Hydrological, Geochemical, and Microbiological Investigations

Studying co-evolution of hydrological and biogeochemical processes in the subsurface of natural landscapes can enhance the understanding of coupled Earth-system processes. Such knowledge is imperative in improving predictions of hydro-biogeochemical cycles, especially under climate change scenarios. We present an experimental method, designed to capture sub-surface heterogeneity of an initially homogeneous soil system. This method is based on destructive sampling of a soil lysimeter designed to simulate a small-scale hillslope. A weighing lysimeter of one cubic meter capacity was divided into sections (voxels) and was excavated layer-by-layer, with sub samples being collected from each voxel. The excavation procedure was aimed at detecting the incipient heterogeneity of the system by focusing on the spatial assessment of hydrological, geochemical, and microbiological properties of the soil. Representative results of a few physicochemical variables tested show the development of heterogeneity. Additional work to test interactions between hydrological, geochemical, and microbiological signatures is planned to interpret the observed patterns. Our study also demonstrates the possibility of carrying out similar excavations in order to observe and quantify different aspects of soil-development under varying environmental conditions and scale.

This study presents an excavation method for investigating subsurface hydrological, geochemical, and microbiological heterogeneity of a soil lysimeter. The lysimeter simulates an artificial hillslope which was initially under homogeneous condition and had been subjected to approximately 5,000 mm of water over eight cycles of irrigation in an 18-month period.

Studying co-evolution of hydrological and biogeochemical processes in the subsurface of natural landscapes can enhance the understanding of coupled ...

The Calibration and Use of Capacitance Sensors to Monitor Stem Water Content in Trees

Water transport and storage through the soil-plant-atmosphere continuum is critical to the terrestrial water cycle, and has become a major research focus area. Biomass capacitance plays an integral role in the avoidance of hydraulic impairment to transpiration. However, high temporal resolution measurements of dynamic changes in the hydraulic capacitance of large trees are rare. Here, we present procedures for the calibration and use of capacitance sensors, typically used to monitor soil water content, to measure the volumetric water content in trees in the field. Frequency domain reflectometry-style observations are sensitive to the density of the media being studied. Therefore, it is necessary to perform species-specific calibrations to convert from the sensor-reported values of dielectric permittivity to volumetric water content. Calibration is performed on a harvested branch or stem cut into segments that are dried or re-hydrated to produce a full range of water contents used to generate a best-fit regression with sensor observations. Sensors are inserted into calibration segments or installed in trees after pre-drilling holes to a tolerance fit using a fabricated template to ensure proper drill alignment. Special care is taken to ensure that sensor tines make good contact with the surrounding media, while allowing them to be inserted without excessive force. Volumetric water content dynamics observed via the presented methodology align with sap flow measurements recorded using thermal dissipation techniques and environmental forcing data. Biomass water content data can be used to observe the onset of water stress, drought response and recovery, and has the potential to be applied to the calibration and evaluation of new plant-level hydrodynamics models, as well as to the partitioning of remotely sensed moisture products into above- and belowground components.

The hydraulic capacitance of biomass is a key component of the vegetation water budget, which serves as a buffer against short and long-term drought stresses. Here, we present a protocol for the calibration and use of soil moisture capacitance sensors to monitor water content in the stems of large trees.

Water transport and storage through the soil-plant-atmosphere continuum is critical to the terrestrial water cycle, and has become a major research focus ...

Forced Flowering in Mandarin Trees under Phytotron Conditions

Phytotron has been widely used to assess the effect of numerous parameters on the development of many species. However, less information is available on how to achieve fast profuse flowering in young fruit trees with this plant growth chamber. This study aimed to outline the design and performance of a fast clear methodology to force flowering in young mandarin trees (cv. Nova and cv. Clemenules) and to analyze the influence of induction intensity on inflorescence type. The combination of a short water stress period with simulated spring conditions (day 13 h, 22 &#176;C, night 11 h, 12 &#176;C) in the phytotron allowed flowers to be obtained only after 68-72 days from the time the experiment began. Low-temperature requirements were adequately replaced with water stress. Floral response was proportional to water stress (measured as the number of fallen leaves): the greater the induction, the larger the quantity of flowers. Floral induction intensity also influenced inflorescence type and dates for flowering. Details on artificial lighting (lumens), photoperiod, temperatures, plant size and age, induction strategy and days for each stage are provided. Obtaining flowers from fruit trees at any time, and also several times a year, can have many advantages for researchers. With the methodology proposed herein, three, or even four, flowering periods can be forced each year, and researchers should be able to decide when, and they will know, the duration of the entire process. The methodology can be useful for: flower production and in vitro pollen germination assays; experiments with pests that affect early fruit development stages; studies on fruit physiological alterations. All this can help plant breeders to shorten times to obtain male and female gametes to perform forced-crosses.

Here, we present a protocol to force flowering in mandarin trees under phytotron conditions. Water stress, high illuminance and a simulated spring photoperiod allowed viable flowers to be obtained in a short period of time. This methodology allows researchers to have several flowering periods in 1 year.

Phytotron has been widely used to assess the effect of numerous parameters on the development of many species. However, less information is available on ...

Automated 3D Optical Coherence Tomography to Elucidate Biofilm Morphogenesis Over Large Spatial Scales

Biofilms are a most successful microbial lifestyle and prevail in a multitude of environmental and engineered settings. Understanding biofilm morphogenesis, that is the structural diversification of biofilms during community assembly, represents a remarkable challenge across spatial and temporal scales. Here, we present an automated biofilm imaging system based on optical coherence tomography (OCT). OCT is an emerging imaging technique in biofilm research. However, the amount of data that currently can be acquired and processed hampers the statistical inference of large scale patterns in biofilm morphology. The automated OCT imaging system allows covering large spatial and extended temporal scales of biofilm growth. It combines a commercially available OCT system with a robotic positioning platform and a suite of software solutions to control the positioning of the OCT scanning probe, as well as the acquisition and processing of 3D biofilm imaging datasets. This setup allows the in situ and non-invasive automated&#160;monitoring of biofilm development and may be further developed to couple OCT imaging with macrophotography and microsensor profiling.

Microbial biofilms form complex architectures at interphases and develop into highly scale-dependent spatial patterns. Here, we introduce an experimental system (hard- and software) for the automated acquisition of 3D optical coherence tomography (OCT) datasets. This toolset allows the non-invasive and multi-scale characterization of biofilm morphogenesis in space and time.