Simple and Efficient Production and Purification of Mouse Myelin Oligodendrocyte Glycoprotein for Experimental Autoimmune Encephalomyelitis Studies

Podsumowanie

We describe a simple protocol using only basic lab equipment to generate and purify large quantities of a fusion protein that contains mouse Myelin Oligodendrocyte Glycoprotein. This protein can be used to induce experimental autoimmune encephalomyelitis driven by both T and B cells.

Streszczenie

Multiple sclerosis (MS) is a chronic inflammatory disease of the central nervous system (CNS), thought to occur as a result of autoimmune responses targeting myelin. Experimental autoimmune encephalomyelitis (EAE) is the most common animal model of CNS autoimmune disease, and is typically induced via immunization with short peptides representing immunodominant CD4⁺ T cell epitopes of myelin proteins. However, B cells recognize unprocessed protein directly, and immunization with short peptide does not activate B cells that recognize the native protein. As recent clinical trials of B cell-depleting therapies in MS have suggested a role for B cells in driving disease in humans, there is an urgent need for animal models that incorporate B cell-recognition of autoantigen. To this end, we have generated a new fusion protein containing the extracellular domain of the mouse version of myelin oligodendrocyte glycoprotein (MOG) as well as N-terminal fusions of a His-tag for purification purposes and the thioredoxin protein to improve solubility (MOG_tag). A tobacco etch virus (TEV) protease cleavage site was incorporated to allow the removal of all tag sequences, leaving only the pure MOG_1-125 extracellular domain. Here, we describe a simple protocol using only standard laboratory equipment to produce large quantities of pure MOG_tag or MOG_1-125. This protocol consistently generates over 200 mg of MOG_tag protein. Immunization with either MOG_tag or MOG_1-125 generates an autoimmune response that includes pathogenic B cells that recognize the native mouse MOG.

Wprowadzenie

MS is a human disease characterized by chronic inflammation and neurodegeneration of the CNS which is thought to be driven by an autoimmune response directed towards myelin. The loss of myelin and axons over time result in the gradual decline of cognitive and motor function¹. "Experimental Autoimmune Encephalomyelitis" is an umbrella term for animal models of autoimmune disease directed towards CNS myelin. Like human MS, EAE is typically characterized by immune cell infiltration of the CNS and, in some cases, demyelination². However, the degree to which any given EAE model resembles human MS in part depends on the species or strain used and on the complexity of the underlying anti-myelin autoimmune response.

Anti-myelin autoimmunity can be experimentally induced in several ways, but the most common method used today is to immunize mice with a short peptide of amino acids mimicking the immunodominant CD4⁺ T cell epitope of a myelin protein. This represents the minimum requirement to induce a pathogenic response. Perhaps the most common of these is a 21 amino acid peptide derived from myelin oligodendrocyte glycoprotein (MOG_35-55), which is used to induce EAE in C57Bl/6 mice³. However, for some experimental purposes it is desirable or even necessary to immunize with larger protein antigens and indeed there are several advantages to this over immunization with short peptide. First, because of MHC restriction, short peptides are usually only effective in a very limited range of strains, while larger protein antigens representing either the whole protein or a specific domain can be processed normally for presentation in multiple inbred mouse strains or even in different species⁴. Second, a larger protein antigen is capable of inducing a more complex immune response incorporating more types of lymphocytes in antigen recognition, rather than limiting antigen recognition to CD4⁺ T cells. For example, B cells via their B cell receptor (BCR) interact directly with whole rather than processed protein. We and others have shown that B cells activated by MOG_35-55 immunization do not recognize MOG protein⁵. Since B cells were recently demonstrated to play a pathogenic role in human MS⁶, EAE models that incorporate B cells in autoimmune pathology are increasingly important.

Despite the advantages of using larger protein antigens to induce EAE, there remain few commercially available sources for such proteins. Indeed, while short peptides like MOG_35-55 can be synthesized very quickly and at a relatively low cost, the commercial options for MOG protein are limited and cost substantially more to purchase. Nonetheless, there are several expression vectors available for research groups to generate MOG extracellular domain (MOG_1-125) themselves. However, all of the expression systems that we have identified in the literature are based on older technologies that have since been replaced with more efficient expression systems⁷. Further, most are based on rat or human MOG⁸. For some investigations of autoimmunity in mice, an antigen based on the mouse MOG autoantigen is preferable. Finally, all MOG-based proteins that we have identified, either commercial or as expression vectors, are fusion proteins containing additional amino acids to the MOG_1-125 base. These include a tag for purification and usually other sequences as well, many of which with a function we were unable to identify.

To address these limitations, we generated a novel fusion protein based on the mouse MOG extracellular domain fused to a tag containing thioredoxin to combat the known insolubility of MOG protein⁵. The tag sequence also contains a 6xHis sequence for purification and a TEV protease cleavage site that allows for the complete removal of all tag sequences, if desired. This is the only method that we are aware of to generate pure MOG_1-125 protein. To facilitate production of large amounts of protein, the MOG_1-125 sequence was codon-optimized for bacterial expression and the MOG_tag fusion protein was inserted into the pET-32 expression system. Here, we describe in detail the protocol to produce and purify MOG_tag protein, and pure MOG_1-125, using non-specialized equipment available to most immunology laboratories.

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Protokół

1. Protein Induction

NOTE: In the following steps, BL21 Escherichia coli bacteria transformed with a pET-32 vector containing the sequence for the MOG_tag fusion protein (see reference⁵ and Figure 1) are grown to high densities and are then induced to express the MOG_tag protein. See Figure 2 for overall timeline - note that days are approximate and alternate stop points are noted in the protocol. If starting with purified pET-32 MOG_tag vector DNA, it will be necessary to chemically transform it into competent BL21 E. coli bacteria using ampicillin selection, as has been well-described⁹. Successful transformation can be confirmed by purifying DNA from selected bacteria using a standard commercial kit, followed by digestion with the restriction enzymes Age1 and Sac1 to produce a 424 bp band on an agarose gel¹⁰.

1. Inoculate 5 ml of sterile Lysogeny broth (LB) broth (0.1 mg ampicillin/ml) with a BL21-MOG_tag glycerol stock and incubate it overnight at 37 °C, 200 rpm.
2. Place two 1 L Erlenmeyer flasks containing 500 ml of sterile LB broth in a 37 °C incubator in preparation for the next day.
3. Add 500 µl of 100 mg/ml ampicillin to each of the flasks containing 500 ml LB from step 1.2 (final concentration 0.1 mg/ml ampicillin). Transfer 1 ml of the overnight culture from step 1.1 to each of the two flasks of LB broth. Incubate at 37 °C and 200 rpm for 5 hr or up to an optical density of 0.6.
4. Take one 1 ml aliquot from one of the flasks and transfer it into a separate 1.5 ml centrifuge tube. Pellet the cells at 16,000 x g for 1 min and remove the supernatant. Label the tube as T₀ (pre-induction) and then put the bacterial pellet into a -20 °C freezer for future sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) analysis (see section 8 and Figure 3).
5. Add 0.5 ml of 1 M Isopropyl β-D-1-thiogalactopyranoside, Isopropyl β-D-thiogalactoside (IPTG) to each culture flask. Incubate the flasks at 37 °C, 200 rpm for 4 hr, then at room temperature at 75 rpm overnight.

2. Harvesting MOG_tag Protein

NOTE: At this stage, the bacteria will have produced large quantities of MOG_tag protein. To harvest MOG_tag, bacteria are first lysed in a Triton X-100 buffer followed by sonication. MOG_tag is then released from inclusion bodies and denatured with imidazole and guanidine, resulting in a crude protein solution containing the MOG_tag protein.

1. Take one 1 ml aliquot from one of the overnight cultures from step 1.5 and transfer it into a 1.5 ml microcentrifuge tube. Pellet the cells at 16,000 x g for 1 min and remove the supernatant. Label the tube T_O/N (post-induction) then put the bacterial pellet into a -20 °C freezer for future SDS page analysis (Figure 3).
2. Distribute the cultures evenly amongst 250 ml bottles compatible with high speed centrifugation and keep these on ice from this point forward. Pellet the bacterial cells at 22,000 x g for 15 min at 4 °C.
3. Discard the supernatant. Store the bacterial pellets at -20 °C or continue to step 2.4.
4. Prepare lysis buffer (0.1 mg/ml hen egg lysozyme, 0.1% Triton-X (v/v) in phosphate buffered saline (PBS)) by adding 60 µl of Triton X-100 and 120 µl of 50 mg/ml hen egg lysozyme stock solution to 60 mL of PBS.
5. Resuspend and combine all of the bacterial pellets from step 2.3 in a total of 30 ml of lysis buffer. Transfer this volume to a round bottom 50 ml tube capable of high speed centrifugation. Place this tube in a 30 °C water bath for 30 min. During the incubation time, shake the tube twice to resuspend the cells.
6. After the incubation, transfer the tube onto ice and sonicate the solution at 20 kHz, amplitude 70%, pulse on 3 sec, pulse off 3 sec, and five pulses per round. Sonicate the solution for six total rounds and allow the solution to cool on ice in-between rounds.
7. Centrifuge the solution at 24,000 x g for 15 min at 4 °C. Discard the supernatant and repeat steps 2.5-2.7 once. Store the pellet at -20 °C or continue to step 2.8.
8. Prepare buffer A (500 mM NaCl, 20 mM Tris-HCl, 5 mM imidazole, pH 7.9) by adding 0.8766 g of NaCl, 0.09456 g of Tris-HCl, and 0.01021 g of imidazole to a 100 ml beaker. Add H₂O until the volume reaches 28 ml then adjust the pH of the solution to 7.9. Then, transfer the solution to a 100 ml graduated cylinder and add H₂O until the volume is 30 ml.
9. Resuspend the pellet from step 2.7 in 30 ml of buffer A and incubate this solution at 4 °C for 3 hr. During this time weigh out 17.2 g of guanidine-HCl.
10. Sonicate the solution on ice using the same settings as in step 2.6. Then add 17.2 g of guanidine-HCl to the solution. Incubate this on ice for 1 hr to solubilize the MOG_tag protein.
11. Centrifuge the solution at 24,000 x g for 30 min at 4 °C. Collect the supernatant and store the supernatant at 4 °C until protein purification.

3. Protein Purification

NOTE: In the following steps the MOG_tag protein will be purified through 4 rounds of absorption onto charged nickel resin (via the His-tag) and elution.

1. Make the Following Buffers:
   1. Prepare Buffer B (500 mM NaCl, 20 mM Tris-HCl, 5 mM imidazole, 6 M guanidine-HCl, pH 7.9). Add 5.844 g of NaCl, 0.6304 g of Tris-HCl, 0.0681 g of imidazole, and 114.64 g guanidine-HCl to a 500 ml beaker. Then add H₂O until it reaches 190 ml and adjust the pH to 7.9. Transfer the solution to a 250 ml graduated cylinder and add H₂O until the volume is 200 ml.
   2. Prepare Elution buffer (500 mM NaCl, 20 mM Tris-HCl, 0.5 M imidazole, 6 M guanidine-HCl, pH 7.9). Add 5.844 g of NaCl, 0.6304 g of Tris-HCl, 6.808 g of imidazole, and 114.64 g guanidine-HCl to a 500 mL beaker. Add H₂O until it reaches 190 ml and adjust the pH to 7.9. Transfer the solution to a 250 ml graduated cylinder and add H₂O until the volume is 200 ml.
   3. Prepare Strip buffer (500 mM NaCl, 20 mM Tris-HCl, 100 mM EDTA, pH 7.9). Add 5.844 g of NaCl, 0.6304 g of Tris-HCl, 40 ml 500 mM EDTA to a 500 mL beaker. Add H₂O until it reaches 190 mL and adjust the pH to 7.9. Transfer the solution to a 250 ml graduated cylinder and add H₂O until the volume is 200 ml.
   4. Prepare Charge buffer (0.1 M nickel sulfate). Add 5.257 g nickel sulfate to a 500 ml beaker and add H₂O until it reaches 190 ml (CAUTION, do not handle nickel sulfate outside of a fume hood until the nickel sulfate has been dissolved in H₂O). Once the nickel sulfate has dissolved, transfer the solution to a 250 ml graduated cylinder and add H₂O until the volume reaches 200 ml.
2. Split 10 ml of nickel resin between two conical 50 ml centrifuge tubes capable of withstanding centrifugal forces over 4,500 x g (5 ml in each tube).
3. Charge and equilibrate the nickel resin:
   1. Wash the resin by adding 40 ml H₂O to each tube containing resin. Lay the tubes horizontally onto a rocker and let them agitate for 5 min at 4 °C. Once finished, centrifuge the tubes at 4,500 x g for 8 min at 4 °C.
   2. Discard the supernatant by pipetting to avoid disturbing the pellet. Add 40 ml of charge buffer to each tube. Transfer the tubes onto a rocker and let them agitate for 15 min at 4 °C. Once finished, centrifuge the tubes at 4,500 x g for 8 min at 4 °C.
   3. Discard the supernatant then add 40 ml of buffer B to the tubes. Transfer the tubes onto a rocker and let them agitate for 5 min at 4 °C. Once finished, centrifuge the tubes at 4,500 x g for 8 min at 4 °C then discard the supernatants.
4. Optional: Take 150 µl of the solubilized protein collected in step 2.11 and transfer it to a 1.5 ml microcentrifuge tube. Label the tube as pre-incubation and freeze this at -20 °C for future SDS page analysis (Figure 3, Crude MOG_tag).
5. Purify the MOG_tag Protein:
   1. Transfer the entire volume of solubilized protein from step 2.11 (~40 ml, minus the small sample removed in step 3.4) to the first tube (Figure 2, tube 1) containing nickel resin from step 3.3, mix, and place horizontally on a rocker at 4 °C for 1 hr.
   2. Centrifuge the tube at 4,500 x g for 8 min at 4 °C. Once finished, transfer the supernatant to the second tube (Figure 2, tube 2) of nickel resin and incubate as described in the previous step. In the meantime, continue with steps 3 to 6 below with tube 1.
   3. Resuspend the nickel resin in tube 1 in 40 ml of elution buffer and place the tube horizontally on a rocker at 4 °C for 5 min. Then, centrifuge the tube at 4,500 x g for 8 min at 4 °C.
   4. Transfer the supernatant containing eluted MOG_tag protein into a 250 ml bottle labelled 'purified MOG_tag protein' and keep this bottle at 4 °C. With each elution step, pool the resulting supernatant in this bottle.
   5. Add 40 ml of strip buffer to the nickel resin and place horizontally on a rocker for 5 min at 4 °C.
   6. Centrifuge the tube at 4,500 x g for 8 min at 4 °C. Discard the supernatant, then recharge the nickel resin as listed in step 3.3.
   7. Once finished, move forward with the second tube as listed in step 3.5. A total of 4 rounds of absorption of the solubilized protein from step 2.11 onto the charged nickel resin and elution will recover most of the protein although, if desired, additional protein could be recovered in additional rounds of absorption and elution.
6. Once four (or more) rounds of absorption and elution are complete, store the pooled purified protein at 4 °C overnight. Nickel resin can be stored in 40 ml of a 20% ethanol solution at 4 °C until it is needed again.

4. Measuring Protein Concentration

NOTE: Before proceeding further it is necessary to quantify the amount of purified MOG_tag protein generated in section 3. This value will be used to determine the final volume to concentrate the protein to at the end of the protocol. We describe a standard Bradford Assay here. The concentration of purified MOG_tag protein is determined by comparing the spectral absorbance of serially diluted MOG_tag protein to a standard curve of bovine serum albumin (BSA) at a known concentration.

1. Make 10x acetate buffer by adding 23 ml glacial acetic acid to 8.2 g sodium acetate in a 3 L beaker and then add 1.9 L of H₂O to dissolve the sodium acetate. Transfer this solution to a 2 L graduated cylinder and add H₂O until the volume reaches 2 L. Then store it in a 2 L bottle at room temperature. Make 1 ml of 1x acetate buffer by adding 100 µl of 10x acetate buffer to 900 µl of H₂O.
2. Set up a 96-well plate for dilutions by adding 30 µl of 1x acetate buffer to wells G2-8 and 60 µl to G9. Add 48 µl of 1x acetate buffer to H2 and H3.
3. Set up the initial serial dilution of the BSA standard in row G as follows: Add 216 µl of 1x acetate buffer and 54 µl of commercially available 2 mg/ml BSA standard in well G1 and mix thoroughly. Add 210 µl from well G1 to well G2, mix thoroughly, and then add 180 µl of well G2 to well G3. Add 150 µL of well G3 to well G4, mix thoroughly, and continue this trend of adding 30 µl fewer to each subsequent well until well G8. (See Table 1 for lists of equivalent dilution factors).
4. Set up triplicate samples of each dilution by transferring 10 µl of well G1 to wells A1, B1, and C1, and 10 µl of well G2 to wells A2, B2, and C2, and so on. Use a multichannel pipette.
5. To set up dilutions of MOG_tag, add 60 µl of purified MOG_tag protein from step 3.6 to well H1. Add 12 µl from well H1 to well H2, mix thoroughly, then add 12 µl of well H2 to well H3, mix thoroughly (this produces a 1x dilution in H1, 1/5 dilution in H2, and 1/25 dilution in H3).
6. Set up triplicate samples for the MOG_tag dilutions by transferring 10 µl of wells H1-H3 to rows D, E, and F, as described in step 4.4.
7. Mix 2 ml of protein assay dye reagent concentrate with 8 ml of H₂O. Add 200 µl of this mixture to all preloaded wells in rows A, B, C, D, E, and F, using a multichannel pipette, if available. Pop any bubbles in the wells using a needle before reading the protein concentration.
8. Within 10 min of adding the dye reagent, measure the 595 nm absorbance of all the wells in rows A, B, C, D, E, and F.
9. Use Rows A, B, and C to set up a standard curve where positions 1-9 correspond to 0.4, 0.35, 0.3, 0.25, 0.2, 0.15, 0.1, 0.05, and 0 mg/ml BSA. Based upon this curve, calculate the concentration of MOG_tag protein using the dilution of MOG_tag that best fits the standard curve. Usually, there will be 200 to 250 mg of MOG_tag protein from 1 L of bacterial culture using the protocol described here.
   NOTE: To make MOG_1-125 proceed from here to the optional section 7 listed at the end of the protocol. Otherwise, continue to section 5.

5. Dialysis

NOTE: Dialysis is performed to gradually remove guanidine from the solution containing purified, denatured MOG_tag to allow the protein to refold. Care must be taken during this step as MOG itself is very insoluble, and while this is improved by the presence of the thioredoxin tag, it is still prone to come out of solution. Therefore, refolding should be performed gradually and at a relatively low MOG_tag concentration.

1. Before starting dialysis, dilute the purified MOG_tag protein with buffer B (buffer B can be made as listed in step 3.1) until the concentration is 0.5 mg/ml or less, based on the quantity of MOG_tag calculated in section 4.
2. Cut approximately 30 cm of snakeskin dialysis tubing and secure one end with a locking hemostat by folding the end of the snake skin over three times and clamping the folded end with the hemostat. Fill the snakeskin with diluted MOG_tag protein (between 60 to 90 ml of MOG_tag protein per tube) then remove air bubbles from the snakeskin by forcing them out of the open end. Finally, seal the other end of the tube using a second locking hemostat.
3. Repeat step 5.2 to fill additional sections of dialysis tubing until all MOG_tag protein has been transferred into snakeskin dialysis tubing. Ensure there are no leaks.
4. Make 1x acetate with 4 M guanidine by weighing out 382.12 g of guanidine-HCl and adding 100 ml of 10x acetate buffer made in step 4.1 to a 2 L beaker. Add 0.5 L of H₂O to the beaker and allow the guanidine-HCl to dissolve. Once dissolved, transfer the solution to a 1 L graduated cylinder and add H₂O until the volume reaches 1 L. Repeat this recipe for every 2 snakeskins that are required.
5. Perform dialysis as follows: fill a large bucket (minimum 10 L) with 1 L of 1x acetate buffer with 4 M guanidine from step 5.4. Place up to 2 sections of dialysis tubing containing MOG_tag into the bucket, leaving room for a magnetic stir bar to spin unhindered in the bottom. Put the bucket in a 4 °C room on a magnetic stir plate and turn it on to a slow rotation rate (i.e. not high, just enough to move the fluid):
   NOTE: Perform the following steps to gradually reduce the amount of guanidine in the buffer. Stir times are given as minimums, but can be left overnight. Dialysis will take a minimum of 3 days, but this can be extended if desired. Regularly check to make sure that the tubing is intact and that the ends are securely closed.
   1. Let the bucket sit and stir for 4-5 hr.
   2. Add 1 L of 1x acetate buffer (100 ml 10x acetate buffer and 900 ml of H₂O) to each bucket.
   3. Repeat steps 5.5.1 and 5.5.2 a total of 3 times for a total of 4 L of buffer in the bucket.
   4. Discard half of the buffer in the bucket and refill with 1 L of 1x acetate buffer (100 ml 10x acetate buffer and 900 ml of H₂O, no guanidine) and set up the tubing and stir bar.
   5. Repeat steps 5.5.1 and 5.5.2 once (i.e. until there is a total of 4 L of buffer in the bucket).
   6. Finally, replace the entire 4 L volume in the bucket with 4 L of fresh 1x acetate buffer and let stir for 4-5 hr. For best results, do this step on the day of protein concentration.
   7. Carefully remove the dialysis tubing with refolded MOG_tag and discard bucket buffer.

6. Concentrating MOG_tag Protein

NOTE: In the final step, refolded MOG_tag protein is concentrated to the working dilution for storage. As MOG_tag is very insoluble, it should not exceed 5 mg/ml. This concentration is approximately equimolar with 0.4 mg/ml MOG_35-55 peptide, which is commonly used to induce EAE in mice (mixed 1:1 with complete Freund's adjuvant (CFA)). During the concentration process it is not uncommon for a small amount of protein to come out of solution in the form of white precipitate. Excessive precipitation is a problem, however.

1. Calculate the final desired volume to achieve a MOG_tag concentration of 5 mg/ml, based on the value calculated in section 4.
2. Line a pan with aluminum foil and cover the aluminum foil with polyethylene glycol (PEG) 3350 and PEG 8,000 at a 1:1 ratio. The PEG 3350 is incorporated into this mixture as it can help prevent protein aggregation during concentration and is an effective cyropreservative¹¹.
3. Put the snakeskin tubing (with MOG_tag protein inside) on top of the aluminum foil and cover with PEG 8000. Let this sit at room temperature and check the volume regularly until the volume is equal to or below the estimated final volume (calculated in step 6.1), the actual volume will be measured in the next step. If the pan becomes oversaturated with water during the concentration process, set up a fresh pan with aluminum foil and PEG 3350 and PEG 8000.
4. Wash the outside of the snakeskins with H₂O and transfer the MOG_tag protein to a separate glass bottle using a serological pipette. Keep track of the volume as the protein is transferred to ensure the volume is correct.
   1. If the volume has been reduced below the estimated final volume, add 1x acetate buffer until the desired volume is reached. If the volume is above the estimated final volume, transfer the MOG_tag protein back into the dialysis tubing and continue the concentration (steps 6.2-6.3).
   2. Distribute the MOG_tag protein amongst 1.5 ml tubes (0.5 ml per tube), store the tubes at -80 °C until needed. To induce EAE, mix this volume 1:1 with CFA.
5. Run an SDS PAGE gel to confirm the expression of the MOG_tag protein using the samples taken in steps 1.4, 2.1, 3.4, and the purified MOG protein from step 6.4.

7. Generating MOG_1-125 from MOG_tag Using TEV Protease (Optional)

NOTE: This optional step continues from the end of step 4. If MOG_1-125 without any extra tag sequences is required, the tag sequences can be removed using TEV protease (Figure 4). As far as we are aware, there is no other expression system capable of generating pure MOG_1-125. However, it should be noted that without the thioredoxin tag, MOG_1-125 is highly insoluble and this may cause problems during purification and handling, and for this reason remove the tag if absolutely necessary for experimental reasons. Several steps are required to generate pure MOG_1-125. MOG_tag is first dialyzed into TEV protease cleavage buffer. Following digestion with TEV protease, the volume is reduced to aid with later purification steps, then dialyzed into buffer B, and then the His-tag containing tag sequence is removed using nickel resin. Finally, protein is quantified and pure MOG_1-125 is concentrated to the final concentration.

1. Make 1 L of 10x TEV cleavage buffer (500 mM Tris-HCl, 5 mM EDTA) by adding 1.861 g EDTA, 44.4 g Tris-HCl, and 26.5 g Tris to a 2 L beaker. Add H₂O until the volume reaches 990 ml then adjust the pH to 8 to dissolve the EDTA. Transfer the solution to a 1 L graduated cylinder and bring the volume up to 1 L using H₂O.
2. Dilute MOG_tag protein from step 3.6 to 0.5 mg/ml using buffer B (the same buffer described in step 3.1), based on the quantity of protein calculated in section 4. Transfer 120 ml of diluted MOG_tag protein to snakeskin dialysis tubing as described in steps 5.2 to 5.3. The volume can be scaled up however the amount of TEV protease required to cleave all of the MOG_tag protein will be substantial.
3. Follow the dialysis protocol listed in step 5.5, except replace the 10x acetate buffer with 10x TEV cleavage buffer made in step 7.1.
4. Transfer the MOG_tag, now in TEV cleavage buffer, to a new 250 ml glass bottle and monitor the increased volume from dialysis. Add 1 µl of β-mercapto-ethanol per every 2.85 ml of MOG_tag protein added to the bottle. Add at least 1 mg of TEV protease (stock TEV solution at 5 mg/ml) for every 50 mg of MOG_tag protein (TEV protease can be added up to a 1:10 TEV:MOG protein ratio) and incubate at room temperature, protected from light for at least 72 hr.
   NOTE: At the end of the TEV protease incubation, white precipitates should be seen at the bottom of the glass bottle.
5. Before transferring the protein to dialysis tubing, add guanidine-HCl to the solution until the proteins dissolve to prevent the protein precipitates from sticking to the glass bottle. Transfer 150 µl of this solution to a 1.5 ml microcentrifuge tube and label the tube as "MOG with TEV". Store the solution at -20 °C for future SDS-PAGE analysis.
6. Transfer all of the fluid from step 7.5 into dialysis tubing as listed in steps 5.2 to 5.3. Fill a large bucket with 2 L of H₂O and place the dialysis tube into the bucket. Incubate this at 4 °C with light stirring overnight. This step is important to dilute out the guanidine to allow the protein concentration to occur quickly and to begin removing the EDTA from the solution that will interfere with protein purification.
7. Concentrate the protein in the dialysis tubing as listed in steps 6.2 to 6.3 (except only use PEG 8000) such that the final volume of the solution is ~40 ml. Wash the dialysis tubing with H₂O and remove any residual PEG 8000 still attached to the tubing. This reduction in volume makes it possible to fit all of the digested protein into a 50 ml tube containing nickel resin, as described in step 3.5.
8. Dialyze the Digested Protein to Buffer B:
   1. Fill a large bucket with 1 L of buffer B (29.22 g NaCl, 3.152 g Tris-HCl, 0.3405 g Imidazole, 573.18 g of guanidine-HCl, pH 7.9).
   2. Place the snakeskins containing digested protein from step 7.7 in the bucket along with a stir magnet (as described in greater detail in step 5.5). Put the bucket into a 4 °C cold room on a stir plate set to a slow stir and allow the snakeskins to dialyze for 5 or more hr.
   3. Empty the bucket and refill it with another 1 L of buffer B and let this sit in the 4 °C cold room on a stir plate set to a slow stir and allow the snakeskins to dialyze for 5 or more h.
9. Perform purification of the MOG_1-125 protein as detailed in section 3, with the important difference that the cleaved tag sequences will be bound by the nickel resin, leaving MOG_1-125 in solution. Again, 4 rounds of purification will be performed on the same volume, but in this case the goal is to improve purity, rather than to recover as much protein as possible. See Figure 4.
   1. Make the protein purification buffers listed in step 3.1
   2. Charge both tubes of nickel resin as described in step 3.3.
   3. Purify MOG_1-125 by the protocol detailed in step 3.5, with the essential exception that the eluate from the nickel resin containing tag is discarded (keep 150 µl of the eluate in a 1.5 ml microcentrifuge tube for future SDS-PAGE analysis), while the solution containing MOG_1-125 is retained as the final product.
10. Measure the Concentration of MOG_1-125 Protein as Described in Section 4:
    1. Set up the BSA standard curve dilutions as described in steps 4.2 and 4.4.
    2. Set up the dilutions of MOG_1-125 as described in steps 4.5 and 4.6. Alternatively, it may be valuable to generate a greater range of dilutions (1x, 1/2, 1/4, and 1/8, for example). Adjust volumes of 1x acetate buffer and MOG_1-125 accordingly.
    3. Perform the Bradford Assay as described in steps 4.7 to 4.9 and calculate the quantity of MOG_1-125 generated. The expected yield is approximately 4 mg or more protein.
11. Refold MOG_1-125 by gradual removal of guanidine via dialysis, as described in section 5.
12. Concentrate MOG_1-125 protein as described in section 6. The final concentration should be 2.24 mg/ml, which is equimolar to 5 mg/mL MOG_tag.

8. SDS-PAGE Gel to Confirm MOG_tag Production and Purity

NOTE: Samples taken from steps 1.4, 2.1, 3.4, and 6.4 are analyzed by standard SDS-PAGE to confirm MOG_tag production and purity. This step should be performed after the final purification of either MOG_tag or MOG_1-125.

1. Make a 2x SDS-PAGE loading buffer by adding 1.576 g of Tris-HCl to 2 ml of H₂O and set the pH to 6.8. Add 0.4 g SDS into the Tris-HCl solution and then add H₂O until the volume reaches 7 ml.
2. Add 0.2 g of bromophenol blue to 10 ml of H₂O then add 1 ml of this to the solution made in step 8.1. Finally, add 2 ml of glycerol to finish the 2x SDS-PAGE loading buffer. When storing this solution, keep at 4 °C and protect it from light for up to 3 months.
3. Thaw the frozen aliquots of bacteria from steps 1.4 and 2.1 as well as the solubilized MOG_tag protein from steps 3.4 and 6.4 at room temperature.
4. Remove the salts from the solutions collected in steps 3.4 and 6.4 by adding 60 µl of each to protein desalting columns. Purify the proteins following manufacturer's instructions.
5. Add 20 µL of β-mercapto-ethanol to 1 ml of the solution made in step 8.2. Add 40 µl of this to the two bacterial pellets from step 8.3 and 60 µl to the desalted proteins from step 8.4 and incubate these at 95 °C for 10 min.
6. Make 1x SDS page running buffer by weighing out 5 g of Tris, 28.8 g glycine, and 1 g SDS. Add these to a 1 L beaker and add 500 mL H₂O to dissolve everything. Once dissolved, transfer the solution to a 1 L graduated cylinder and fill with H₂O until the volume reaches 1 L.
7. Set up a 12% polyacrylamide gel in a gel apparatus then add the 1x SDS-PAGE running buffer to the gel apparatus such that the running buffer is just above the top of the wells in the gel. Wash the wells of the gel by pipetting 50 µl of running buffer into the wells five times each.
8. Load 10 µl of protein ladder into the first well and add 10 µl of the boiled solutions from step 8.5 to separate wells. Run the gel at 115 V for 60 min.
9. Remove the gel from the apparatus and transfer it to a small container. Fill the container with 100 ml of pure H₂O and transfer the container to a slowly rotating platform for 8 min. After the 8 min, dump the water and wash the gel twice more with H₂O.
10. Dump the H₂O from the container and add 100 ml of rapid stain reagent to the container. Allow this to sit on a slowly rotating platform overnight, cover with aluminum foil.
11. Dump the rapid stain reagent and add approximately 100 ml of H₂O to the container. Allow this to sit on a rotating platform for 8 min. Dump the H₂O and repeat the H₂O wash twice.
12. Image the gel using an imager for coomassie blue stains. Look for a band around 31.86 kDa (MOG_tag protein) and a fainter band at 63.72 kDa (MOG_tag dimers).

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Wyniki

Once the purification is complete, samples collected in steps 1.4, 2.1, 3.4, and the final product from step 6.4 should be run on a protein gel (Figure 3A). MOG_tag should first appear as a 31.86 kDa band in the T_O/N sample, but not T₀, and should be the only band in the final pure product. To test whether the MOG_tag protein has correctly folded, the MOG_tag protein can be used to label MOG-protein specific B cells by F...

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Dyskusje

Here, we have described a protocol for the production of MOG_tag protein and how to generate pure MOG_1-125 from the MOG_tag protein. This protocol is based both on standard His-tag based protein purification methods, as well as a previously described protocol for the generation of an older MOG-based protein¹⁵. Although it is not described here, the primary usage of the MOG_tag protein is to induce EAE through immunization with protein antigen. A protocol describing how ...

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Materiały

Name	Company	Catalog Number	Comments
BL21 E. coli- pet32-MOGtag	Kerfoot lab		These bacteria are required to make the MOGtag protein. Glycerol stocks of these bacteria are available upon request.
LB broth miller	Bioshop	LBL407.1
Ampicillin	bio basic	AB0028	Reconsititute the powder into 50% ethanol/ 50% H2O at 100 mg/ml. Store at -20 °C.
IPTG	Bioshop	IPT002.5	Reconsititute the powder into H2O at 1M and store at -20 °C.
Chicken-egg lysozyme	Bioshop	LYS702.10	Reconstitute in H2O at 50 mg/ml and store at -80 °C.
Triton-X100	Sigma	T-8532
Phosphate buffered saline	life technologies	20012-027	Commercial phosphate buffered saline is not required, any standard lab made phosphate buffered saline is sufficient.
Sodium chloride	Bioshop	SOD004.1
Tris-HCl	Bioshop	TRS002.1
Imidazole	Bioshop	IMD508.100
Guanidine-HCl	Sigma	G3272	The quality must be greater than 98% purity.
0.5 M EDTA	bioshop	EDT111.500
Nickel (II) sulfate	Bioshop	NIC700.500
His bind resin	EMD Millipore	69670-3	Store in 20% ethanol 80% H2O at 4 °C
Anhydrous ethanol	Commercial Alcohols	P016EAAN	Dilute with water as needed.
Glacial acetic acid	Bioshop	ACE222.1
Sodium acetate trihydrate	Bioshop	SAA305.500
bovine serum albumin standard	bio-rad	500-0206
Bio-rad protein assay dye reagent concentrate	bio-rad	500-0006
Ethylenediamine tetraacetic acid, disodium salt dihydrate	Fisher scientific	BP120-500
Tris-base	Bioshop	TRS001.1
7000 MW Snakeskin dialysis tubing	Thermoscientific	68700
2-mercaptoethanol	Sigma	M3148-25ml	This reagent should not be handled outside of a fume hood.
AcTEV protease	lifetechnologies	12575-015	Producing your own TEV protease can be accomplished using (https://www.addgene.org/8827/) and purified as in reference 17
Polyethyleneglycol 3350	Bioshop	PEG335.1
polyethyleneglycol 8000	Bioshop	PEG800.1
Nunc MaxiSorp flat-bottom 96 well plate	ebioscience	44-2404-21
Sonicator	Fisher scientific	FB-120-110
Eon microplate spectrometer	Biotek	11-120-611	This equipment uses the Gen5 data analysis software.
Gen5 data analysis software	BioTek
sodium dodecyl sulphate	Bioshop	SDS001
bromophenol blue	Bioshop	BRO777
Glycerol	Bioshop	GLY001
Protein desalting columns	Thermoscientific	89849
Glycine	Bioshop	GLN001
precast 12% polyacrylamide gel	bio-rad	456-1045
Rapid stain reagent	EMD Millipore	553215
Gel dock EZ imager	bio-rad	1708270
White Light Sample Tray	bio-rad	1708272	Used along with gel dock EZ imager for coomassie blue stains
Protein ladder	bio-rad	1610375