Center for Data Driven Discovery in Biomedicine,
Division of Neurosurgery
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Inositol polyphosphate multikinase: metabolic architect of nuclear inositides.
Frontiers in bioscience : a journal and virtual library , 2008 | Pubmed ID: 17981594
Gene deletion of inositol hexakisphosphate kinase 1 reveals inositol pyrophosphate regulation of insulin secretion, growth, and spermiogenesis.
Proceedings of the National Academy of Sciences of the United States of America Feb, 2008 | Pubmed ID: 18268345
Duplication of 7q34 in pediatric low-grade astrocytomas detected by high-density single-nucleotide polymorphism-based genotype arrays results in a novel BRAF fusion gene.
Brain pathology (Zurich, Switzerland) Jul, 2009 | Pubmed ID: 19016743
Activating mutations in BRAF characterize a spectrum of pediatric low-grade gliomas.
Neuro-oncology Jul, 2010 | Pubmed ID: 20156809
The genetic landscape of the childhood cancer medulloblastoma.
Science (New York, N.Y.) Jan, 2011 | Pubmed ID: 21163964
Inositol polyphosphate multikinase is a physiologic PI3-kinase that activates Akt/PKB.
Proceedings of the National Academy of Sciences of the United States of America Jan, 2011 | Pubmed ID: 21220345
Spinal cord ependymomas and myxopapillary ependymomas in the first 2 decades of life: a clinicopathological and immunohistochemical characterization of 19 cases.
Journal of neurosurgery. Pediatrics Jun, 2012 | Pubmed ID: 22656257
Paradoxical activation and RAF inhibitor resistance of BRAF protein kinase fusions characterizing pediatric astrocytomas.
Proceedings of the National Academy of Sciences of the United States of America Apr, 2013 | Pubmed ID: 23533272
Exome sequencing identifies BRAF mutations in papillary craniopharyngiomas.
Nature genetics Feb, 2014 | Pubmed ID: 24413733
Phase II study of sorafenib in children with recurrent or progressive low-grade astrocytomas.
Neuro-oncology Oct, 2014 | Pubmed ID: 24803676
A Novel Inositol Pyrophosphate Phosphatase in Saccharomyces cerevisiae: Siw14 PROTEIN SELECTIVELY CLEAVES THE β-PHOSPHATE FROM 5-DIPHOSPHOINOSITOL PENTAKISPHOSPHATE (5PP-IP5).
The Journal of biological chemistry Mar, 2016 | Pubmed ID: 26828065
MYB-QKI rearrangements in angiocentric glioma drive tumorigenicity through a tripartite mechanism.
Nature genetics Mar, 2016 | Pubmed ID: 26829751
BRAF Status in Personalizing Treatment Approaches for Pediatric Gliomas.
Clinical cancer research : an official journal of the American Association for Cancer Research Nov, 2016 | Pubmed ID: 27217440
The biorepository portal toolkit: an honest brokered, modular service oriented software tool set for biospecimen-driven translational research.
BMC genomics Aug, 2016 | Pubmed ID: 27535360
Inositol polyphosphates intersect with signaling and metabolic networks via two distinct mechanisms.
Proceedings of the National Academy of Sciences of the United States of America Nov, 2016 | Pubmed ID: 27791083
MYB-QKI drives childhood brain tumors via tripartite mechanism.
Cell cycle (Georgetown, Tex.) Mar, 2017 | Pubmed ID: 27973981
Shared ACVR1 mutations in FOP and DIPG: Opportunities and challenges in extending biological and clinical implications across rare diseases.
Bone Apr, 2018 | Pubmed ID: 28780023
Overcoming resistance to single-agent therapy for oncogenic gene fusions combinatorial targeting of MAPK and PI3K/mTOR signaling pathways.
Oncotarget Oct, 2017 | Pubmed ID: 29156677
The landscape of genomic alterations across childhood cancers.
Nature Mar, 2018 | Pubmed ID: 29489754
Plain-language medical vocabulary for precision diagnosis.
Nature genetics Apr, 2018 | Pubmed ID: 29632381
Dual HDAC and PI3K Inhibition Abrogates NFκB- and FOXM1-Mediated DNA Damage Response to Radiosensitize Pediatric High-Grade Gliomas.
Cancer research Jul, 2018 | Pubmed ID: 29760046
Molecular, Pathological, Radiological, and Immune Profiling of Non-brainstem Pediatric High-Grade Glioma from the HERBY Phase II Randomized Trial.
Cancer cell May, 2018 | Pubmed ID: 29763623
Novel FGFR2-INA fusion identified in two low-grade mixed neuronal-glial tumors drives oncogenesis via MAPK and PI3K/mTOR pathway activation.
Acta neuropathologica Jul, 2018 | Pubmed ID: 29767381
Author Correction: The landscape of genomic alterations across childhood cancers.
Nature 07, 2018 | Pubmed ID: 29875405
Purification of mRNA Encoding Chimeric Antigen Receptor Is Critical for Generation of a Robust T-Cell Response.
Human gene therapy Feb, 2019 | Pubmed ID: 30024272
Clinically Relevant and Minimally Invasive Tumor Surveillance of Pediatric Diffuse Midline Gliomas Using Patient-Derived Liquid Biopsy.
Clinical cancer research : an official journal of the American Association for Cancer Research Dec, 2018 | Pubmed ID: 30322880
IPMK Mediates Activation of ULK Signaling and Transcriptional Regulation of Autophagy Linked to Liver Inflammation and Regeneration.
Cell reports Mar, 2019 | Pubmed ID: 30840891
A pilot precision medicine trial for children with diffuse intrinsic pontine glioma-PNOC003: A report from the Pacific Pediatric Neuro-Oncology Consortium.
International journal of cancer Mar, 2019 | Pubmed ID: 30861105
Intratumoral Genetic and Functional Heterogeneity in Pediatric Glioblastoma.
Cancer research May, 2019 | Pubmed ID: 30877103
Transcriptome signatures associated with meningioma progression.
Acta neuropathologica communications Apr, 2019 | Pubmed ID: 31039818
Development and Clinical Validation of a Large Fusion Gene Panel for Pediatric Cancers.
The Journal of molecular diagnostics : JMD Sep, 2019 | Pubmed ID: 31255796
Immunotherapy for pediatric brain tumors: past and present.
Neuro-oncology Oct, 2019 | Pubmed ID: 31504801
Genomic Analysis of Dysembryoplastic Neuroepithelial Tumor Spectrum Reveals a Diversity of Molecular Alterations Dysregulating the MAPK and PI3K/mTOR Pathways.
Journal of neuropathology and experimental neurology Dec, 2019 | Pubmed ID: 31617914
Comparative Tumor RNA Sequencing Analysis for Difficult-to-Treat Pediatric and Young Adult Patients With Cancer.
JAMA network open Oct, 2019 | Pubmed ID: 31651965
The InsP phosphatase Siw14 regulates inositol pyrophosphate levels to control localization of the general stress response transcription factor Msn2.
The Journal of biological chemistry Feb, 2020 | Pubmed ID: 31848224
Ancestry and frequency of genetic variants in the general population are confounders in the characterization of germline variants linked to cancer.
BMC medical genetics May, 2020 | Pubmed ID: 32375678
A germline pathogenic variant identified in a pediatric high-grade glioma.
Cold Spring Harbor molecular case studies Aug, 2020 | Pubmed ID: 32554798
Harmonization of postmortem donations for pediatric brain tumors and molecular characterization of diffuse midline gliomas.
Scientific reports Jul, 2020 | Pubmed ID: 32616776
A transcriptome-based classifier to determine molecular subtypes in medulloblastoma.
PLoS computational biology Oct, 2020 | Pubmed ID: 33119584
Integrated Proteogenomic Characterization across Major Histological Types of Pediatric Brain Cancer.
Cell Dec, 2020 | Pubmed ID: 33242424
annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions.
BMC bioinformatics Dec, 2020 | Pubmed ID: 33317447
Genomic characterization of a PPP1CB-ALK fusion with fusion gene amplification in a congenital glioblastoma.
Cancer genetics Apr, 2021 | Pubmed ID: 33341678
BRAF fusions in pediatric histiocytic neoplasms define distinct therapeutic responsiveness to RAF paradox breakers.
Pediatric blood & cancer Jun, 2021 | Pubmed ID: 33565241
Proteogenomic and metabolomic characterization of human glioblastoma.
Cancer cell Apr, 2021 | Pubmed ID: 33577785
Integrated molecular and clinical analysis of low-grade gliomas in children with neurofibromatosis type 1 (NF1).
Acta neuropathologica Apr, 2021 | Pubmed ID: 33585982
NTRK Fusions Identified in Pediatric Tumors: The Frequency, Fusion Partners, and Clinical Outcome.
JCO precision oncology , 2021 | Pubmed ID: 34036219
Cancer Informatics for Cancer Centers: Scientific Drivers for Informatics, Data Science, and Care in Pediatric, Adolescent, and Young Adult Cancer.
JCO clinical cancer informatics Aug, 2021 | Pubmed ID: 34428097
Targeted gene expression profiling of inverted papilloma and squamous cell carcinoma.
International forum of allergy & rhinology Feb, 2022 | Pubmed ID: 34510780
MitoScape: A big-data, machine-learning platform for obtaining mitochondrial DNA from next-generation sequencing data.
PLoS computational biology Nov, 2021 | Pubmed ID: 34762648
Neurotrophic tyrosine receptor kinase fusion in pediatric central nervous system tumors.
Cancer genetics Apr, 2022 | Pubmed ID: 35108662
Development of GPC2-directed chimeric antigen receptors using mRNA for pediatric brain tumors.
Journal for immunotherapy of cancer Sep, 2022 | Pubmed ID: 36167467
The children's brain tumor network (CBTN) - Accelerating research in pediatric central nervous system tumors through collaboration and open science.
Neoplasia (New York, N.Y.) Jan, 2023 | Pubmed ID: 36335802
ALT in Pediatric High-Grade Gliomas Can Occur without ATRX Mutation and is Enriched in Patients with Pathogenic Germline MMR Variants.
Neuro-oncology Dec, 2022 | Pubmed ID: 36541551
Kyra Harvey1,
Peter J. Madsen2,3,
Tiffany Smith2,
Crystal Griffin1,2,
Luke Patterson1,2,
Nicholas A. Vitanza4,5,
Phillip B. Storm2,3,
Adam C. Resnick2,3,
Jessica B. Foster1,2
1Division of Oncology, Children’s Hospital of Philadelphia,
2Center for Data Driven Discovery in Biomedicine, Children’s Hospital of Philadelphia,
3Division of Neurosurgery, Children’s Hospital of Philadelphia,
4Ben Towne Center for Childhood Cancer Research, Seattle Children’s Research Institute,
5Department of Pediatrics, Seattle Children’s Hospital, University of Washington
SOBRE A JoVE
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