Estes experimentos foram modificados a partir de um manual de laboratório que tem sido utilizado em um curso, orquestrada pelo Dr. HL Atwood, no Departamento de Zoologia da Universidade de Toronto. Os exercícios também foram utilizados e modificados de um manual que foi produzido para &quot;6 º WORKSHOP Ibro intensivo sobre neurociência básica&quot; e foi realizado na Korea University, Seoul, Coreia do Sul em 1993 (Cooper et al., 1993). As modificações atuais eram obrigados a usar o equipamento comum para apresentar laboratórios dias estudante dirigido em várias universidades. Apoiada pela Universidade de Kentucky, Departamento de Biologia, Instituto de Estudos de Graduação e Faculdade de Artes e Ciências.

<ol>
	<li>Bennett, M. V. L., Barrio, L. C., Bargiello, T. A., Spray, D. C., Hertzberg, E., Sdez, J. C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Gap+junctions:+new+tools,+new+answers,+new+questions.">Gap junctions: new tools, new answers, new questions.</a> Neuron. 6, 305-320 (1991).</li><li>Bernardini, G., Peracchia, C., Peracchia, L. L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Reversible+effects+of+heptanol+on+gap+junction+structure+and+cell-to-cell+electrical+coupling.">Reversible effects of heptanol on gap junction structure and cell-to-cell electrical coupling.</a> European Journal of Cell Biology. 34 (2), 307-312 (1984).</li><li>Cooper, R. L., Chang, J. J., Ito, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+report+on+the,+"SIXTH+INTENSIVE+IBRO+WORKSHOP+ON+BASIC+NEUROSCIENCE".">A report on the, "SIXTH INTENSIVE IBRO WORKSHOP ON BASIC NEUROSCIENCE".</a> , 116-116 (1985).</li><li>Cragg, B. G., Thomas, P. K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+relationship+between+conduction+velocity+and+the+diameter+and+internodal+length+of+peripheral+nerve+fibers..">The relationship between conduction velocity and the diameter and internodal length of peripheral nerve fibers..</a> Journal of Physiology. 136, 606-614 (1957).</li><li>Erlanger, J. G. a. s. s. e. r., S, H., Bishop, G. H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+compound+nature+of+the+action+current+of+nerves+as+disclosed+by+the+cathode+ray+oscillograph.">The compound nature of the action current of nerves as disclosed by the cathode ray oscillograph.</a> American Journal of Physiology. 70, 624-666 (1924).</li><li>Furshpan, E. J., Potter, D. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Transmission+at+the+giant+motor+synapses+of+the+crayfish.">Transmission at the giant motor synapses of the crayfish.</a> Journal of Physiology. 145 (2), 289-325 (1959).</li><li>Johnston, M. F., Simon, S. A., Ramrn, F. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Interaction+of+anesthetics+with+electrical+synapses.">Interaction of anesthetics with electrical synapses.</a> Nature (Lond). 286, 498-500 (1980).</li><li>Loewenstein, W. R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Permeability+of+membrane+junctions.">Permeability of membrane junctions.</a> Annual NY Academy of Sciences. 137, 441-472 (1966).</li><li>Meda, P., Bruzzone, R., Knodel, S., Orci, L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Blockage+of+cell-to-cell+communication+within+pancreatic+acini+is+associated+with+increased+basal+release+of+amylase.">Blockage of cell-to-cell communication within pancreatic acini is associated with increased basal release of amylase.</a> Journal of Cell Biology. 103 (2), 475-483 (1986).</li><li>Peracchia, C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Increase+in+gap+junction+resistance+with+acidification+in+crayfish+septate+axons+is+closely+related+to+changes+in+intracellular+calcium+but+not+hydrogen+ion+concentration.">Increase in gap junction resistance with acidification in crayfish septate axons is closely related to changes in intracellular calcium but not hydrogen ion concentration.</a> Journal of Membrane Biology. 113 (1), 75-92 (1990).</li><li>Peracchia, C., Dulhunty, A. F. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Low+resistance+junctions+in+crayfish:+structural+changes+with+functional+uncoupling.">Low resistance junctions in crayfish: structural changes with functional uncoupling.</a> Journal of Cell Biology. 70, 419-439 (1976).</li><li>Peracchia, C., Bernardini, G., Peracchia, L. L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Is+calmodulin+involved+in+the+regulation+of+gap+junction+permeability.">Is calmodulin involved in the regulation of gap junction permeability.</a> Pf&#252;gers Arch. 399, 152-154 (1983).</li><li>Peracchia, C., Lazrak, A., Peracchia, L. L., Peracchia, C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Molecular+models+of+channel+interaction+and+gating+in+gap+junctions.">Molecular models of channel interaction and gating in gap junctions.</a> Handbook of Membrane Channels. Molecular and Cellular Physiology. , 361-377 (1994).</li><li>Spray, D. C., Harris, A. L., Bennett, M. V. L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Gap+junctional+conductance+is+a+simple+and+sensitive+function+of+intracellular+pH.">Gap junctional conductance is a simple and sensitive function of intracellular pH.</a> Sciences NY. 211, 712-715 (1981).</li><li>Spray, D. C., Harris, L. L., Bennett, M. V. L., Nuccitelli, R., Deamer, D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Comparison+of+pH+and+Ca+dependence+of+gap+junctional+conductance.">Comparison of pH and Ca dependence of gap junctional conductance.</a> Intracellular pH: Its Measurement, Regulation, and Utilization in Cellular Functions. , 445-461 (1982).</li><li>Spray, D. C., White, R., De Carvalho, C., Harris, A. L., Bennett, M. L. V. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Gating+of+gap+junction+channels.">Gating of gap junction channels.</a> Journal of Biophysics. 45, 219-230 (1984).</li><li>Watanabe, A., Grundfest, H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Impulse+propagation+at+the+septal+and+commissural+junctions+of+crayfish+lateral+giant+axons.">Impulse propagation at the septal and commissural junctions of crayfish lateral giant axons.</a> Journal of General Physiology. 45, 267-308 (1961).</li><li>Wiersma, C. A. G., Hughes, G. M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=On+the+functional+anatomy+of+neuronal+units+in+the+abdominal+cord+of+the+crayfish,+Procambarus+clarkii.">On the functional anatomy of neuronal units in the abdominal cord of the crayfish, Procambarus clarkii.</a> Journal of Comparative Neurology. 116, 209-228 (1961).</li></ol>

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Nosso objetivo na apresentação de vídeo on-line e este trabalho é demonstrar que as propriedades biofísicas das células pode, em parte, ser modelado como circuitos elétricos. Além disso, com o tecido neural ao vivo que é relativamente fácil de obter, princípios fundamentais da velocidade de condução, períodos refratários e técnicas de gravação eletrofisiológicas são possíveis para os laboratórios de estudante de graduação com modesto investimento de equipamento. Os temas e paradigmas fundamentais apresentadas podem ser facilmente modificados para as necessidades de diferentes cursos. Manutenção de lagostas e sua abundância torna modelos mais atraentes para estudantes-driven experimentação. Cordões nervosos crustáceo ventral são geralmente robusto e manter a integridade fisiológica em uma solução salina mínima de horas, que é adequada para um laboratório de estudante três horas. Dado que alguns dos grandes axônios no VNC do lagostim são conectados através de junções, a experimentação adicional sobre a sua contribuição pode ser realizada, e propriedades diferentes do que o encontrado no padrão preparação nervo ciático de rã pode ser demonstrada. O nervo ciático é um modelo clássico para abordar potenciais compostos de ação e propriedades de condução. Pode até ser uma experiência interessante comparativa para os alunos comparar as propriedades de condução, recrutamento axônio, e os períodos refratários entre essas duas preparações.

Placa de circuito <ol><li> Eletrônicos listados abaixo para os experimentos breadboard podem ser obtidas em uma loja local da eletrônica como a Radio Shack. </li><li> Placa de pão, resistores, capacitores, baterias e fios que podem servir como cruzamentos para a breadboard, conforme descrito nos experimentos. </li><li> Um voltímetro comum (Wavetek Meterman voltímetro) </li><li> A / D para o conselho sobre a gravação de linha para um computador. Sinais elétricos são registrados na linha de uma interface PowerLab/4s (ADInstruments, Colorado Springs, CO, EUA). Nós usamos software padrão de ADInstruments chamado gráfico ou Âmbito. </li></ol> Experimentos fisiologia <ol><li> Lagostim (Procambarus clarkii). Atchafalaya Biological Supply Co., Raceland, LA., EUA. </li><li> Padrão lagostas salina: Modificado de solução de Van Harreveld (1936). (Em mM) 205 NaCl; 5,3 KCl, 13,5 CaCl 2 2H 2 O, 2,45 MgCl 2 6H 2 O, 5 e HEPES pH ajustado para 7,4. Todos os produtos químicos salinos foram obtidos da Sigma Chemical Company (St. Louis, MO). </li><li> Ferramentas de dissecção: Fine # 5 pinças, tesoura fina, lâmina de faca, # 26002-20 pinos de insetos (todos obtidos a partir de Ferramentas Ciência Fine (EUA), Inc., 373-G Vintage Park Drive, Foster City, CA 94404-1139) </li><li> Um prato câmara do nervo (ADInstruments, Colorado Springs, CO, EUA) para conter o nervo. Os fios que vêm com o prato câmara do nervo pode ser usado para estimular o nervo. </li><li> Um eletrodo de sucção é usada para registrar os sinais. </li><li> O manipulador ou um grampo em um suporte de anel também servirá como um suporte para o eletrodo de sucção. </li><li> Gaiola de Faraday </li><li> Microscópio de dissecação </li><li> Iluminador de Alta Intensidade (fonte de luz) </li><li> Plataforma microscópio </li><li> AC / DC Amplificador Diferencial (AM Sistemas Modelo Inc. 3000) </li><li> PowerLab 26T (Instrumentos AD) </li><li> Amplificador extracelular (AD Instruments) </li><li> LabChart 7 (ADI Instruments) </li><li> Ferramentas de dissecação </li><li> Um anel de suporte e fixação para servir como um suporte para o eletrodo de sucção de gravação </li></ol>

modeling biological membranes with circuit boards and measuring electrical signals in axons: student laboratory exercises

Esta é uma demonstração de como os modelos elétricos podem ser usadas para caracterizar membranas biológicas. Este exercício também apresenta a terminologia utilizada biofísicos em eletrofisiologia. O mesmo equipamento é utilizado no modelo de membrana como sobre os preparativos ao vivo. Algumas propriedades de um cordão nervoso isoladas são investigadas: potenciais de ação do nervo, o recrutamento de neurônios, e capacidade de resposta do cordão nervoso a fatores ambientais.

Watch this Scientific Journal Video about Modeling Biological Membranes with Circuit Boards and Measuring Electrical Signals in Axons: Student Laboratory Exercises at JoVE.com

Modeling Biological Membranes with Circuit Boards and Measuring Electrical Signals in Axons: Student Laboratory Exercises

Esta é uma demonstração de como membranas biológicas podem ser compreendidos através de modelos elétricos. Nós também demonstramos os procedimentos para registrar potenciais de ação a partir do cordão nervoso ventral do crustáceo para laboratórios de estudantes orientados.

Modelagem de Membranas Biológicas, com placas de circuito e medição de sinais elétricos em Axônios: Exercícios Laboratório Student

This is a demonstration of how electrical models can be used to characterize biological membranes. This exercise also introduces biophysical terminology ...

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22.5K visualizações.  University of Kentucky. Esta é uma demonstração de como membranas biológicas podem ser compreendidos através de modelos elétricos. Nós também demonstramos os procedimentos para registrar potenciais de ação a partir do cordão nervoso ventral do crustáceo para laboratórios de estudantes orientados.

Vídeo: Modeling Biological Membranes with Circuit Boards and Measuring Electrical Signals in Axons: Student Laboratory Exercises

Microbial Communities in Nature and Laboratory - Interview

Comunidades microbianas na Natureza e Laboratório - Entrevista

Biologia

Measuring the Induced Membrane Voltage with Di-8-ANEPPS

Placement of a cell into an external electric field causes a local charge redistribution inside and outside of the cell in the vicinity of the cell membrane, resulting in a voltage across the membrane. This voltage, termed the induced membrane voltage (also induced transmembrane voltage, or induced transmembrane potential difference) and denoted by &Delta;&Phi;, exists only as long as the external field is present. If the resting voltage is present on the membrane, the induced voltage superimposes (adds) onto it. By using one of the potentiometric fluorescent dyes, such as di-8-ANEPPS, it is possible to observe the variations of &Delta;&Phi; on the cell membrane and to measure its value noninvasively. di-8-ANEPPS becomes strongly fluorescent when bound to the lipid bilayer of the cell membrane, with the change of the fluorescence intensity proportional to the change of &Delta;&Phi;. This video shows the protocol for measuring &Delta;&Phi; using di-8-ANEPPS and also demonstrates the influence of cell shape on the amplitude and spatial distribution of &Delta;&Phi;.

External electric field induces a voltage on the membrane of a cell, termed the induced membrane voltage (&Delta;&Phi;). By using the potentiometric dye di-8-ANEPPS, it is possible to measure the &Delta;&Phi; noninvasively. This video shows the protocol for measuring &Delta;&Phi; using di-8-ANEPPS.

Medir a tensão de membrana induzida com Di-8-ANEPPS

Placement of a cell into an external electric field causes a local charge redistribution inside and outside of the cell in the vicinity of the cell ...

Computer-assisted Large-scale Visualization and Quantification of Pancreatic Islet Mass, Size Distribution and Architecture

The pancreatic islet is a unique micro-organ composed of several hormone secreting endocrine cells such as beta-cells (insulin), alpha-cells (glucagon), and delta-cells (somatostatin) that are embedded in the exocrine tissues and comprise 1-2% of the entire pancreas. There is a close correlation between body and pancreas weight. Total beta-cell mass also increases proportionately to compensate for the demand for insulin in the body. What escapes this proportionate expansion is the size distribution of islets. Large animals such as humans share similar islet size distributions with mice, suggesting that this micro-organ has a certain size limit to be functional. The inability of large animal pancreata to generate proportionately larger islets is compensated for by an increase in the number of islets and by an increase in the proportion of larger islets in their overall islet size distribution. Furthermore, islets exhibit a striking plasticity in cellular composition and architecture among different species and also within the same species under various pathophysiological conditions. In the present study, we describe novel approaches for the analysis of biological image data in order to facilitate the automation of analytic processes, which allow for the analysis of large and heterogeneous data collections in the study of such dynamic biological processes and complex structures. Such studies have been hampered due to technical difficulties of unbiased sampling and generating large-scale data sets to precisely capture the complexity of biological processes of islet biology. Here we show methods to collect unbiased "representative" data within the limited availability of samples (or to minimize the sample collection) and the standard experimental settings, and to precisely analyze the complex three-dimensional structure of the islet. Computer-assisted automation allows for the collection and analysis of large-scale data sets and also assures unbiased interpretation of the data. Furthermore, the precise quantification of islet size distribution and spatial coordinates (i.e. X, Y, Z-positions) not only leads to an accurate visualization of pancreatic islet structure and composition, but also allows us to identify patterns during development and adaptation to altering conditions through mathematical modeling. The methods developed in this study are applicable to studies of many other systems and organisms as well.

Novel computer-assisted methods of large-scale procurement and analysis of immunohistochemically stained pancreatic specimens are described: (1) Virtual Slice capture of the entire section; (2) Mass analysis of large-scale data; (3) Reconstruction of 2D Virtual Slices; (4) 3D islet mapping; and (5) Mathematical analysis.

Assistida por computador visualização de grande escala e Quantificação da Missa das ilhotas pancreáticas, distribuição de tamanho e Arquitetura

The pancreatic islet is a unique micro-organ composed of several hormone secreting endocrine cells such as beta-cells (insulin), alpha-cells (glucagon), ...

High-throughput Screening and Biosensing with Fluorescent C. elegans Strains

High-throughput screening (HTS) is a powerful approach for identifying chemical modulators of biological processes. However, many compounds identified in screens using cell culture models are often found to be toxic or pharmacologically inactive in vivo1-2. Screening in whole animal models can help avoid these pitfalls and streamline the path to drug development.
C. elegans is a multicellular model organism well suited for HTS. It is small (&lt;1 mm) and can be economically cultured and dispensed in liquids. C. elegans is also one of the most experimentally tractable animal models permitting rapid and detailed identification of drug mode-of-action3.
We describe a protocol for culturing and dispensing fluorescent strains of C. elegans for high-throughput screening of chemical libraries or detection of environmental contaminants that alter the expression of a specific gene. Large numbers of developmentally synchronized worms are grown in liquid culture, harvested, washed, and suspended at a defined density. Worms are then added to black, flat-bottomed 384-well plates using a peristaltic liquid dispenser. Small molecules from a chemical library or test samples (e.g., water, food, or soil) can be added to wells with worms. In vivo, real-time fluorescence intensity is measured with a fluorescence microplate reader. This method can be adapted to any inducible gene in C. elegans for which a suitable reporter is available. Many inducible stress and developmental transcriptional pathways are well defined in C. elegans and GFP transgenic reporter strains already exist for many of them4. When combined with the appropriate transgenic reporters, our method can be used to screen for pathway modulators or to develop robust biosensor assays for environmental contaminants. 
We demonstrate our C. elegans culture and dispensing protocol with an HTS assay we developed to monitor the C. elegans cap &#x2018;n&#x2019; collar transcription factor SKN-1. SKN-1 and its mammalian homologue Nrf2 activate cytoprotective genes during oxidative and xenobiotic stress5-10. Nrf2 protects mammals from numerous age-related disorders such as cancer, neurodegeneration, and chronic inflammation and has become a major chemotherapeutic target11-13.Our assay is based on a GFP transgenic reporter for the SKN-1 target gene gst-414, which encodes a glutathione-s transferase6. The gst-4 reporter is also a biosensor for xenobiotic and oxidative chemicals that activate SKN-1 and can be used to detect low levels of contaminants such as acrylamide and methyl-mercury15-16.

High-throughput Screening and Biosensing with Fluorescent C. elegans Strains

A procedure for liquid-based culturing and dispensing of C. elegans strains expressing fluorescent reporter proteins is described that does not require expensive sorting equipment. This approach can be applied to numerous inducible C. elegans genes for drug discovery or biosensing of contaminants.

Alto rendimento Triagem e Biossensoriais com Fluorescente C. elegans Cepas

High-throughput screening (HTS) is a powerful approach for identifying chemical modulators of biological processes.  However, many compounds identified in ...

Aseptic Laboratory Techniques: Volume Transfers with Serological Pipettes and Micropipettors

Microorganisms are everywhere - in the air, soil, and human body as well as on inanimate surfaces like laboratory benches and computer keyboards. The ubiquity of microbes creates a copious supply of potential contaminants in a laboratory. To ensure experimental success, the number of contaminants on equipment and work surfaces must be minimized. Common among many experiments in microbiology are techniques involving the measurement and transfer of cultures containing bacterial cells or viral particles. To do so without contacting non-sterile surfaces or contaminating sterile media requires (1) preparing a sterile workspace, (2) precisely setting and accurately reading instruments for aseptic transfer of liquids, and (3) properly manipulating instruments, cultures flasks, bottles and tubes within a sterile field. Learning these procedures calls for training and practice. At first, actions should be slow, deliberate, and controlled with the goal being for aseptic technique to become second nature when working at the bench. Here we present the steps for measuring volumes using serological pipettes and micropipettors within a sterile field created by a Bunsen burner. Volumes range from microliters (&mu;l) to milliliters (ml) depending on the instrument used. Liquids commonly transferred include sterile broth or chemical solutions as well as bacterial cultures and phage stocks. By following these procedures, students should be able to: &#8226;Work within the sterile field created by the Bunsen burner flame. &#8226;Use serological pipettes without compromising instrument sterility.&#8226; Aspirate liquids with serological pipettes, precisely reading calibrated volumes by aligning the meniscus formed by the liquid to the graduation marks on the pipette. &#8226;Keep culture bottles, flasks, tubes and their respective caps sterile during liquid transfers. &#8226;Identify different applications for plastic versus glass serological pipettes. &#8226;State accuracy limitations for micropipettors. &#8226;Precisely and accurately set volumes on micropipettors. &#8226;Know how to properly use the first and second stop on a micropipettor to aspirate and transfer correct volumes.

When working in a laboratory, it is imperative to minimize sources of contamination. Aseptic technique refers to procedures that permit transfer of cultures and reagents while avoiding contact with non-sterile surfaces. Serological pipettes and micropipettors are used to measure precise volumes without compromising sterility of solutions used in experiments.

Assépticas Técnicas de Laboratório: transferências de volume com pipetas sorológicas e micropipetas

Microorganisms are everywhere - in the air, soil, and human body as well as on inanimate surfaces like laboratory benches and computer keyboards. The ...

Measuring Fast Calcium Fluxes in Cardiomyocytes

Cardiomyocytes have multiple Ca2+ fluxes of varying duration that work together to optimize function 1,2. Changes in Ca2+ activity in response to extracellular agents is predominantly regulated by the phospholipase C&beta;- G&alpha;q pathway localized on the plasma membrane which is stimulated by agents such as acetylcholine 3,4. We have recently found that plasma membrane protein domains called caveolae5,6 can entrap activated G&alpha;q 7. This entrapment has the effect of stabilizing the activated state of G&alpha;q and resulting in prolonged Ca2+ signals in cardiomyocytes and other cell types8. We uncovered this surprising result by measuring dynamic calcium responses on a fast scale in living cardiomyocytes. Briefly, cells are loaded with a fluorescent Ca2+ indicator. In our studies, we used Ca2+ Green (Invitrogen, Inc.) which exhibits an increase in fluorescence emission intensity upon binding of calcium ions. The fluorescence intensity is then recorded for using a line-scan mode of a laser scanning confocal microscope. This method allows rapid acquisition of the time course of fluorescence intensity in pixels along a selected line, producing several hundreds of time traces on the microsecond time scale. These very fast traces are transferred into excel and then into Sigmaplot for analysis, and are compared to traces obtained for electronic noise, free dye, and other controls. To dissect Ca2+ responses of different flux rates, we performed a histogram analysis that binned pixel intensities with time. Binning allows us to group over 500 traces of scans and visualize the compiled results spatially and temporally on a single plot. Thus, the slow Ca2+ waves that are difficult to discern when the scans are overlaid due to different peak placement and noise, can be readily seen in the binned histograms. Very fast fluxes in the time scale of the measurement show a narrow distribution of intensities in the very short time bins whereas longer Ca2+ waves show binned data with a broad distribution over longer time bins. These different time distributions allow us to dissect the timing of Ca2+fluxes in the cells, and to determine their impact on various cellular events.

We present a method to isolate rapid (microsecond) calcium events from slower fluxes in living cells using laser scanning confocal microscopy. The method measures fluorescence intensity fluctuations of calcium indicators by recording line scans of several hundred pixels in a cell. Histogram analysis allows us to isolate the time scales of different calcium fluxes.

Fluxos de medição de cálcio rápido no Cardiomyocytes

Cardiomyocytes have multiple Ca2+ fluxes of varying duration that work together to optimize function 1,2. Changes in Ca2+ activity in response to ...

Measuring Spatial and Temporal Ca2+ Signals in Arabidopsis Plants

Developmental and environmental cues induce Ca2+ fluctuations in plant cells. Stimulus-specific spatial-temporal Ca2+ patterns are sensed by cellular Ca2+ binding proteins that initiate Ca2+ signaling cascades. However, we still know little about how stimulus specific Ca2+ signals are generated. The specificity of a Ca2+ signal may be attributed to the sophisticated regulation of the activities of Ca2+ channels and/or transporters in response to a given stimulus. To identify these cellular components and understand their functions, it is crucial to use systems that allow a sensitive and robust recording of Ca2+ signals at both the tissue and cellular levels. Genetically encoded Ca2+ indicators that are targeted to different cellular compartments have provided a platform for live cell confocal imaging of cellular Ca2+ signals. Here we describe instructions for the use of two Ca2+ detection systems: aequorin based FAS (film adhesive seedlings) luminescence Ca2+ imaging and case12 based live cell confocal fluorescence Ca2+ imaging. Luminescence imaging using the FAS system provides a simple, robust and sensitive detection of spatial and temporal Ca2+ signals at the tissue level, while live cell confocal imaging using Case12 provides simultaneous detection of cytosolic and nuclear Ca2+ signals at a high resolution.

Measuring Spatial and Temporal Ca2+ Signals in Arabidopsis Plants

Ca2+ signaling regulates diverse biological processes in plants. Here we present approaches for monitoring abiotic stress induced spatial and temporal Ca2+ signals in Arabidopsis cells and tissues using the genetically encoded Ca2+ indicators Aequorin or Case12.

Medindo espacial e temporal Ca<sup&gt; 2 +</sup&gt; Sinais em Arabidopsis Plantas

Developmental and environmental cues induce Ca2+ fluctuations in plant cells. Stimulus-specific spatial-temporal Ca2+ patterns are sensed by cellular Ca2+ ...

Measuring Nitrite and Nitrate, Metabolites in the Nitric Oxide Pathway, in Biological Materials using the Chemiluminescence Method

Nitric oxide (NO) is one of the main regulator molecules in vascular homeostasis and also a neurotransmitter. Enzymatically produced NO is oxidized into nitrite and nitrate by interactions with various oxy-heme proteins and other still not well known pathways. The reverse process, reduction of nitrite and nitrate into NO had been discovered in mammals in the last decade and it is gaining attention as one of the possible pathways to either prevent or ease a whole range of cardiovascular, metabolic and muscular disorders that are thought to be associated with decreased levels of NO. It is therefore important to estimate the amount of NO and its metabolites in different body compartments &#8212; blood, body fluids and the various tissues. Blood, due to its easy accessibility, is the preferred compartment used for estimation of NO metabolites. Due to its short lifetime (few milliseconds) and low sub-nanomolar concentration, direct reliable measurements of blood NO in vivo present great technical difficulties. Thus NO availability is usually estimated based on the amount of its oxidation products, nitrite and nitrate. These two metabolites are always measured separately. There are several well established methods to determine their concentrations in biological fluids and tissues. Here we present a protocol for chemiluminescence method (CL), based on spectrophotometrical detection of NO after nitrite or nitrate reduction by tri-iodide or vanadium(III) chloride solutions, respectively. The sensitivity for nitrite and nitrate detection is in low nanomolar range, which sets CL as the most sensitive method currently available to determine changes in NO metabolic pathways. We explain in detail how to prepare samples from biological fluids and tissues in order to preserve original amounts of nitrite and nitrate present at the time of collection and how to determine their respective amounts in samples. Limitations of the CL technique are also explained.

Nitric oxide (NO) is an important signaling molecule in vascular homeostasis. NO production in vivo is too low for direct measurement. Chemiluminescence provides useful insight into NO cycle via measuring its precursors and oxidation products, nitrite and nitrate. Nitrite / nitrate determination in body tissues and fluids is explained.

Medindo nitrito e nitrato, metabolitos na Óxido Nítrico Pathway, em materiais biológicos utilizando o método de quimioluminescência

Nitric oxide (NO) is one of the main regulator molecules in vascular homeostasis and also a neurotransmitter. Enzymatically produced NO is oxidized into ...

Cultivation of Caenorhabditis elegans in Three Dimensions in the Laboratory

The use of genetic model organisms such as Caenorhabditis elegans has led to seminal discoveries in biology over the last five decades. Most of what we know about C. elegans is limited to laboratory cultivation of the nematodes that may not necessarily reflect the environments they normally inhabit in nature. Cultivation of C. elegans in a 3D habitat that is more similar to the 3D matrix that worms encounter in rotten fruits and vegetative compost in nature could reveal novel phenotypes and behaviors not observed in 2D. In addition, experiments in 3D can address how phenotypes we observe in 2D are relevant for the worm in nature. Here, a new method in which C. elegans grows and reproduces normally in three dimensions is presented. Cultivation of C. elegans in Nematode Growth Tube-3D (NGT-3D) can allow us to measure the reproductive fitness of C. elegans strains or different conditions in a 3D environment. We also present a novel method, termed Nematode Growth Bottle-3D (NGB-3D), to cultivate C. elegans in 3D for microscopic analysis. These methods allow scientists to study C. elegans biology in conditions that are more reflective of the environments they encounter in nature. These can help us to understand the overlying evolutionary relevance of the physiology and behavior of C. elegans we observe in the laboratory.

Cultivation of Caenorhabditis elegans in Three Dimensions in the Laboratory

We present a simple method to construct 3D nematode cultivation systems called NGT-3D and NGB-3D. These can be used to study nematode fitness and behaviors in habitats that are more similar to natural Caenorhabditis elegans habitats than the standard 2D laboratory C. elegans culture plates.

cultivo de<em&gt; Caenorhabditis elegans</em&gt; Em três dimensões em Laboratório

The use of genetic model organisms such as Caenorhabditis elegans has led to seminal discoveries in biology over the last five decades. Most of what we ...

Sample Preparation and Imaging of Exosomes by Transmission Electron Microscopy

Exosomes are nano-sized extracellular vesicles secreted by body fluids and are known to represent the characteristics of cells that secrete them. The contents and morphology of the secreted vesicles reflect cell behavior or physiological status, for example cell growth, migration, cleavage, and death. The exosomes&#39; role may depend highly on size, and the size of exosomes varies from 30 to 300 nm. The most widely used method for exosome imaging is negative staining, while other results are based on Cryo-Transmission Electron Microscopy, Scanning Electron Microscopy, and Atomic Force Microscopy. The typical exosome&#39;s morphology assessed through negative staining is a cup-shape, but further details are not yet clear. An exosome well-characterized through structural study is necessary particular in medical and pharmaceutical fields. Therefore, function-dependent morphology should be verified by electron microscopy techniques such as labeling a specific protein in the detailed structure of exosome. To observe detailed structure, ultrathin sectioned images and negative stained images of exosomes were compared. In this protocol, we suggest transmission electron microscopy for the imaging of exosomes including negative staining, whole mount immuno-staining, block preparation, thin section, and immuno-gold labelling.

This protocol describes the various techniques necessary for transmission electron microscopy including negative staining, ultrathin sectioning for detailed structure, and immuno-gold labelling to determine the positions of specific proteins in exosomes.

Preparação da amostra e a imagem latente de Exosomes por microscopia eletrônica de transmissão

Exosomes are nano-sized extracellular vesicles secreted by body fluids and are known to represent the characteristics of cells that secrete them. The ...