We are grateful to Mr Roger Ackroyd, Mr Andrew Wyman and Mr Chris Stoddard, Consultant Surgeons at Sheffield Teaching Hospitals NHS Foundation Trust, for their help in acquiring esophageal tissue samples and their support of our work. We thank Ashraful Haque for his help incorporating tumor cell lines into the model. We gratefully acknowledge financial support for this study by grants from the Bardhan Research and Education Trust (BRET) and Yorkshire Cancer Research (YCR).

Human esophageal cells are obtained from patients undergoing gastric or esophageal surgery. Informed consent is obtained for the tissue to be used for research purposes, and the tissue used anonymously under the appropriate ethical approvals (SSREC 165/03, Human Research Tissue Bank Licence 12179).
1. Isolation of Human Esophageal Epithelial Cells
<ol>
	<li>Working in a laminar flow tissue culture hood and using sterile technique, prepare the epithelial culture medium by mixing Dulbecco&#8217;s Modified Eagle&#8217;s medium (DMEM) and Ham&#8217;s F12 in a 3:1 ratio (v:v). Add 10% (v/v) FCS, 10 ng/ml epidermal growth factor, 0.4 &#181;g/ml hydrocortisone, 1.8 x 10-4 M adenine, 5 &#181;g/ml insulin, 5 &#181;g/ml transferrin, 2 x 10-7 M triiodothyronine, 1 x 10-10 M cholera toxin, 2 x 10-3 M glutamine, 100 IU/ml penicillin, 100 &#181;g/ml streptomycin, and 0.625 &#181;g/ml amphotericin B.</li>
	<li>Using standard sterile techniques, put 11 ml of DMEM, 10% FCS, 2 x 10-3 M L-glutamine, 100 IU/ml penicillin, 100 &#181;g/ml streptomycin, and 0.625 &#181;g/ml amphotericin B into a T75 tissue culture flask. Add 1 x 106 lethally irradiated mouse 3T3 fibroblasts12 in 1 ml of the same medium and incubate overnight at 37 &#176;C in a 5% CO2, humidified atmosphere. This will produce a feeder layer for the subsequent culture of epithelial cells.</li>
	<li>Using a scalpel and following the recommendations of a histopathologist, dissect an approximately 2 cm2 sample of tissue from the disease-free background region of esophageal squamous mucosa obtained from patients undergoing gastric or esophageal surgery. Transport to the laboratory in a 50 ml container of sterile transport medium (PBS 100 IU/ml penicillin, 100 &#181;g/ml streptomycin and 0.625 &#181;g/ml amphotericin B) at room temperature.</li>
	<li>At this point, store the tissue in the transport medium for up to 12 hr (overnight) at 4 &#176;C, for convenience; however do not use longer storage periods as they result in reduced cell viability.</li>
	<li>Working in a laminar flow tissue culture hood and using sterile technique, sterilize a scalpel blade by soaking in 70% ethanol for 5 min. Rinse in sterile PBS.</li>
	<li>Place the tissue in a sterile Petri dish and use the scalpel to cut it into 0.5 cm strips. Add 5 ml of 0.1% (w/v) trypsin in PBS to the Petri dish, place the lid on the dish and incubate for 1 hr at 37 &#176;C.</li>
	<li>Add 5 ml of FCS to the tissue in the Petri dish to inhibit the trypsin. Holding the strip of tissue with sterile forceps, gently scrape the epithelial surface with the scalpel blade for 1-2 min per strip to remove the epithelial cells into the surrounding medium. Remove the scraped tissue and set aside. Repeat the process for all the tissue strips.</li>
	<li>Collect the medium containing the detached epithelial cells into a 15 ml centrifuge tube and centrifuge (5 min, 200 x g). Pour off the supernatant and resuspend the pellet in 12 ml of epithelial medium (described in step 1.1).</li>
	<li>Pour off and discard the medium from the feeder cell layer in the T75 flask prepared in step 1.2. Use a sterile pipette to add the cell suspension containing the freshly isolated epithelial cells to the flask and incubate at 37 &#176;C in a 5% CO2, humidified atmosphere.</li>
	<li>After 24 hr pour off and discard the culture medium, which will also contain cell debris, and replace with 12 ml of fresh epithelial medium. Continue incubating at 37 &#176;C in a 5% CO2, humidified atmosphere. Colonies will start to appear over the next 24 to 48 hr and can be viewed by placing the culture flask under a standard light microscope. Pour off the spent culture medium and replace with an equal volume of fresh medium every 2 to 3 days.</li>
	<li>Once the flask has reached 80% confluency, passage the cells13. Split the cells in a ratio of 1:5 to increase cell numbers for use in the model. Follow step 1.2 to establish feeder layers of irradiated 3T3 cells in each flask that will be receiving epithelial cells 24 hr prior to passaging the cells. 
	Note: Use the epithelial cells in the esophageal model described below between passages 1 and 4 only.</li>
</ol>
2. Isolation of Human Esophageal Fibroblasts
<ol>
	<li>Working in a laminar flow cabinet and using sterile technique, take the tissue set aside in step 1.7. Place in a sterile Petri dish and mince finely by chopping with a sterile scalpel blade. Add 10 ml of 0.5% (w/v) collagenase A solution and place the lid on the Petri dish and incubate at 37 &#176;C overnight in a 5% CO2, humidified atmosphere.</li>
	<li>Transfer the digest to a 15 ml centrifuge tube and centrifuge (10 min, 200 x g), carefully pour off and discard the supernatant and resuspend the pellet in 10 ml of fibroblast culture medium (DMEM 10% FCS, 2 x 10-3 M L-glutamine, 100 IU/ml penicillin, 100 &#181;g/ml streptomycin, and 0.625 &#181;g/ml amphotericin B).</li>
	<li>Place the suspension into a T75 flask and incubate at 37 &#176;C in a 5% CO2, humidified atmosphere. After 24 hr pour off the medium, which will contain debris and replace with 12 ml of fresh fibroblast medium. Replace the culture medium every 2 to 3 days and passage cells once they have reached 80% confluency13, splitting the cells in a 1:5 ratio to increase cell numbers. 
	Note: Use the fibroblast cells in the model described below between passages 4 and 10 only.</li>
</ol>
3. Preparation of the De-cellularized Esophageal Scaffold
<ol>
	<li>Obtain intact porcine esophagi at an abattoir from freshly slaughtered Landrace pigs that are used for food production. One single esophagus will provide sufficient scaffolds for approximately 30 separate constructs. 
	Note: Due to the extensive and time consuming sterilization protocol required, it is normally worth obtaining and processing a minimum of 10 esophagi at one time.</li>
	<li>Immediately place the freshly excised esophagus into a 180 ml sterile pot containing approximately 150 ml of 10% povidone-iodine solution for 5 min to reduce any contaminating microbial load. Transfer the esophagus to a second pot containing approximately 100 ml of sterile PBS containing 200 IU/ml penicillin, 200 &#181;g/ml streptomycin, and 1.25 &#181;g/ml amphotericin B.
	<ol>
		<li>Replace the lid on the container and transport the esophagi back to the laboratory at room temperature. Two or three esophagi can be transported in each container, depending upon their size.</li>
	</ol>
	</li>
	<li>Once at the laboratory, handle the tissue in a laminar flow hood using aseptic technique to minimize microbial contamination. Sterilize tweezers, scissors and scalpel blades by soaking for 5 min in 70% ethanol, and rinsing in sterile PBS.</li>
	<li>Handle the esophagus using sterile tweezers. Using the scissors, cut open the esophagus longitudinally. Rinse the tissue by placing the esophagus into a 180 ml sterile pot containing approximately 100 ml of sterile PBS and shaking gently to remove any debris.</li>
	<li>Clean a cork dissection board by spraying liberally with 70% ethanol and allow to dry.</li>
	<li>Remove the esophagus from the PBS, and using sterile needles, pin out the esophagus onto the board, mucosal surface uppermost. Grasp the mucosal surface at one end of the esophagus with sterile tweezers and pull away from the board. This will separate the mucosa from the underlying submucosa.
	<ol>
		<li>Then, use a sterile scalpel blade to dissect the esophagus longitudinally along the lamina propria, removing pins as the dissection progresses to allow the mucosa to be lifted away.</li>
	</ol>
	</li>
	<li>Retain the dissected mucosa and discard the underlying submucosa.</li>
	<li>Cut off and discard the most proximal and distal 2 cm of the mucosa as there is a greater number of submucosal glands and a thicker lamina propria in those areas, respectively7.</li>
	<li>Use a scalpel to cut the remaining tissue into 5 cm2. Place all the cut tissue into a 180 ml sterile pot containing approximately 150 ml of sterile PBS and agitate gently to rinse the tissue. If processing more than five esophagi at one time it may be necessary to use multiple pots for this and the three subsequent steps.</li>
	<li>Using sterile tweezers, transfer the cut tissue into a 180 ml pot containing 150 ml of sterile 1 M NaCl, 200 IU/ml penicillin, 200 &#181;g/ml streptomycin and 1.25 &#181;g/ml amphotericin B. Incubate for 72 hr at 37 &#176;C.</li>
	<li>Place the tissue into a fresh 180 ml pot containing 150 ml sterile PBS. The epithelium will have begun to visibly separate from the underlying tissue. Gently peel the detaching epithelium from the pig esophagus using sterile forceps and discard.
	<ol>
		<li>Place the remaining tissue into a fresh 180 ml pot and add 150 ml of sterile PBS. Agitate gently for 5 min to wash. Pour off the PBS and repeat a further two times with fresh PBS.</li>
	</ol>
	</li>
	<li>Place all the tissue into a 500 ml glass bottle containing 400 ml of sterile 80% (v/v) glycerol solution for 24 hr at room temperature. Transfer to 400 ml of sterile 90% (v/v) glycerol solution for a further 24 hr.</li>
	<li>Store in 400 ml of sterile 100% glycerol solution at room temperature for a minimum of 4 months to dehydrate and sterilize the tissue while preserving the integrity of the basement membrane.</li>
</ol>
4. Production of the Culture Media
<ol>
	<li>Prepare chelated newborn calf serum for use in the culture medium.
	<ol>
		<li>Pour 100 g of Chelex 100 into a glass 1 L bottle and add de-ionized water. The exact volume is not critical but sufficient water must be added to cover the Chelex powder. Add a magnetic stirrer and sterilize by autoclaving (121 &#176;C for 15 min).</li>
		<li>Allow the bottle to cool and the Chelex to settle. In a laminar flow cabinet pour off the excess water, add 500 ml of newborn calf serum (NCS) and leave to stir overnight at 4 &#176;C.</li>
		<li>Stop stirring and allow the Chelex to settle, this can take up to 30 min. In a laminar flow cabinet decant the chelated serum using a sterile pipette, taking care not to disturb the Chelex, and store in 10 ml aliquots at -20 &#176;C.</li>
	</ol>
	</li>
	<li>Prepare three different media in a laminar flow cabinet, commencing with pro-proliferative and ending with pro-differentiative formulations.
	<ol>
		<li>Prepare Composite Medium I comprised of DMEM and Hams F12 in a 3:1 ratio (v:v), 4 x 10-3 M L-glutamine, 0.5 &#181;g/ml hydrocortisone, 1 x 10-4 M O-phosphorylethanolamine, 2 x 10-12 M triiodothyronine, 1.8 x 10-4 M adenine, 1.88 x 10-3 M CaCl2, 4 x 10-12 M progesterone, 10 &#181;g/ml insulin, 10 &#181;g/ml transferrin, 10 ng/ml selenium, 1 x 10-3 M ethanolamine and 0.1% (v/v) chelated NCS.</li>
		<li>Prepare Composite Medium II as Composite Medium I except replace chelated serum with 0.1% (v/v) non-chelated NCS.</li>
		<li>Prepare Composite Medium III as Composite Medium II except omit progesterone and increase serum to 2% (v/v) non-chelated NCS.</li>
	</ol>
	</li>
</ol>
5. Production of the Human Esophageal Mucosa Model
<ol>
	<li>Perform all work in a laminar flow hood, using aseptic technique to maintain a sterile environment. Sterilize all tools by soaking in 70% ethanol for 5 min, before rinsing in sterile PBS.</li>
	<li>The day before it is required, rehydrate the acellular porcine esophageal scaffold. One piece of scaffold is required for each construct to be prepared.
	<ol>
		<li>To rehydrate the tissue place sufficient pieces of porcine scaffold into a pot containing 100 ml of sterile PBS, agitate and soak for 10 min. Decant the PBS and replace with fresh PBS. Repeat the washing process five times to ensure removal of all glycerol traces.</li>
	</ol>
	</li>
	<li>Test the scaffold sterility by incubating the rehydrated tissue overnight in 100 ml of DMEM at 37 &#176;C. If there is no change to the color or turbidity of the culture medium at the end of the incubation period the scaffold is assumed to be sterile. Once sterility has been confirmed, place the 5 cm2 acellular scaffold into a 6 well plate, submucosal side uppermost.</li>
	<li>Place a sterile medical grade stainless steel ring (internal diameter 10 mm, external diameter 20 mm) onto the center of each scaffold and gently press down using sterile forceps, to ensure an adequate seal with the tissue.</li>
	<li>Harvest the fibroblasts using Trypsin-EDTA13 to produce a cell suspension. Count the cells using a haemocytometer14. Centrifuge the cell suspension (10 min, 200 x g). Resuspend the cell pellet into an appropriate volume of fibroblast medium to produce a final cell count of 2.5 x 106 cells per ml.</li>
	<li>Add 0.2 ml of fibroblast medium, containing 5 x 105 human esophageal fibroblasts, within each ring. Flood the area around the outside of the ring with approximately 2 ml of fibroblast medium. Incubate at 37 &#176;C in a 5% CO2, humidified atmosphere.</li>
	<li>After 24 hr remove the rings and fibroblast medium and add at least 5 ml of fresh fibroblast medium to each well, ensuring that the scaffold is totally immersed in medium. Culture for 1 week, at 37 &#176;C in a 5% CO2, humidified atmosphere replacing the medium every 2 to 3 days.</li>
	<li>After 1 week remove the 6 well plates containing the scaffolds to a laminar flood hood, remove the medium and invert each scaffold using sterile forceps, placing the mucosal surface uppermost. This time point is referred to as Day 0.</li>
	<li>Place the steel rings on the mucosal surface in the center of the tissue as in step 5.4.</li>
	<li>Prepare the T75 flasks of epithelial cells for trypsinization13. After the PBS wash and prior to the addition of trypsin-EDTA solution, add 2 ml of sterile 0.02% (w/v) EDTA solution to each flask. Incubate for 2 min at 37 &#176;C. Tap the flask gently to selectively detach the i3T3 feeder layer while leaving the epithelial cells attached. 
	Note: It is generally not practical or necessary to patient match the epithelial cells to the fibroblasts already incorporated in the model the previous week.</li>
	<li>Pour off the EDTA solution containing the feeder layer and add trypsin-EDTA solution to harvest the epithelial cells13. Count the cells using a haemocytometer14. Centrifuge the cell suspension (10 min, 200 x g). Resuspend the cell pellet into an appropriate volume of Composite Medium 1 to produce a final cell count of 5 x 106 cells per ml.</li>
	<li>Add 0.2 ml of Composite Medium I, containing 1 x 106 epithelial cells, within the ring. Flood the area around the outside of the ring with approximately 2 ml of Composite Medium I and place the constructs into the incubator at 37 &#176;C in a 5% CO2, humidified atmosphere.</li>
	<li>After 24 hr (Day 1) remove the rings and medium and add at least 5 ml of fresh Composite Medium I, ensuring the scaffolds are fully submerged and return to the incubator. After a further 24 hr (Day 2) remove the medium and replaced with at least 5 ml of Composite Medium II, again ensuring the scaffolds are fully submerged and return to the incubator.</li>
	<li>On Day 4 place sterile medical grade stainless steel mesh grids (2 cm wide x 2 cm long x 0.5 cm high), into fresh 6 well plates, one per construct. Use sterile tweezers to transfer the constructs onto the top of the steel grids, mucosal surface uppermost.
	<ol>
		<li>Add sufficient Composite Medium III so that the liquid reaches the underside of the composite, but the surface is exposed to the air, this ensures that the sample is maintained at an air-liquid interface. The exact volume of medium required will vary depending upon the thickness of the scaffold, the volume of the well and the precise height of the stainless steel grid.</li>
	</ol>
	</li>
	<li>Maintain the composites at an air-liquid interface for between 10 and 20 days (Day 14 to Day 24), depending upon the requirements of the experiment. Replace the Composite Medium III with fresh medium every 2 to 3 days (Monday, Wednesday, Friday is a user-friendly regime). 
	Note: After 5 days at an air-liquid interface (Day 9) the constructs have a sufficiently mature esophageal epithelium to be used in experiments of the impact of environmental factors on the esophageal epithelium.</li>
	<li>At the end of the experiment, fix the constructs for histological analysis and immunohistochemical staining7, or extract protein15 or RNA11,16 from the epithelium for further analysis. If required, retain the conditioned culture medium for analysis of extracellular signaling molecules17.</li>
</ol>

<ol>
	<li>Pera, M., Manterola, C., Vidal, O., Grande, L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Epidemiology+of+esophageal+adenocarcinoma.">Epidemiology of esophageal adenocarcinoma.</a> J. Surg. Oncol. 92 (3), 151-159 (2005).</li><li>Manea, G. S., Lupusoru, C., Caruntu, I. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Experimental+study+on+the+effect+of+bile,+and+bile+and+hydrochloric+acid+mixture+on+the+esophageal+mucosa.">Experimental study on the effect of bile, and bile and hydrochloric acid mixture on the esophageal mucosa.</a> Rom. J. Morphol. Embryol. 50 (1), 61-66 (2009).</li><li>Andl, C. D., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Epidermal+growth+factor+receptor+mediates+increased+cell+proliferation,+migration,+and+aggregation+in+esophageal+keratinocytes+in+vitro+and+in+vivo.">Epidermal growth factor receptor mediates increased cell proliferation, migration, and aggregation in esophageal keratinocytes in vitro and in vivo.</a> J. Biol. Chem. 278 (3), 1824-1830 (2003).</li><li>Underwood, T. J., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+comparison+of+primary+oesophageal+squamous+epithelial+cells+with+HET-1A+in+organotypic+culture.">A comparison of primary oesophageal squamous epithelial cells with HET-1A in organotypic culture.</a> Biol. Cell. 102 (12), 635-644 (2010).</li><li>Nystrom, M. L., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Development+of+a+quantitative+method+to+analyse+tumour+cell+invasion+in+organotypic+culture.">Development of a quantitative method to analyse tumour cell invasion in organotypic culture.</a> J. Pathol. 205 (4), 468-475 (2005).</li><li>Okawa, T., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+functional+interplay+between+EGFR+overexpression,+hTERT+activation,+and+p53+mutation+in+esophageal+epithelial+cells+with+activation+of+stromal+fibroblasts+induces+tumor+development,+invasion,+and+differentiation.">The functional interplay between EGFR overexpression, hTERT activation, and p53 mutation in esophageal epithelial cells with activation of stromal fibroblasts induces tumor development, invasion, and differentiation.</a> Genes &amp; Development. 21 (21), 2788-2803 (2007).</li><li>Green, N., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+development+and+characterization+of+an+organotypic+tissue-engineered+human+esophageal+mucosal+model.">The development and characterization of an organotypic tissue-engineered human esophageal mucosal model.</a> Tissue Eng Part A. 16 (3), 1053-1064 (2010).</li><li>Harada, H., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Telomerase+induces+immortalization+of+human+esophageal+keratinocytes+without+p16INK4a+inactivation.">Telomerase induces immortalization of human esophageal keratinocytes without p16INK4a inactivation.</a> Mol. Cancer Res. 1 (10), 729-738 (2003).</li><li>Bhargava, S., Chapple, C. R., Bullock, A. J., Layton, C., MacNeil, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Tissue-engineered+buccal+mucosa+for+substitution+urethroplasty.">Tissue-engineered buccal mucosa for substitution urethroplasty.</a> BJU. Int. 93 (6), 807-811 (2004).</li><li>Ralston, D. R., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Keratinocytes+contract+human+dermal+extracellular+matrix+and+reduce+soluble+fibronectin+production+by+fibroblasts+in+a+skin+composite+model.">Keratinocytes contract human dermal extracellular matrix and reduce soluble fibronectin production by fibroblasts in a skin composite model.</a> Br. J. Plast. Surg. 50 (6), 408-415 (1997).</li><li>Green, N. H., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Pulsatile+exposure+to+simulated+reflux+leads+to+changes+in+gene+expression+in+a+3D+model+of+oesophageal+mucosa.">Pulsatile exposure to simulated reflux leads to changes in gene expression in a 3D model of oesophageal mucosa.</a> Int. J. Exp. Pathol. 95 (3), 216-228 (2014).</li><li>Wang, C. S., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Selective+culture+of+epithelial+cells+from+primary+breast+carcinomas+using+irradiated+3T3+cells+as+feeder+layer.">Selective culture of epithelial cells from primary breast carcinomas using irradiated 3T3 cells as feeder layer.</a> Pathol. Res. Pract. 197 (3), 175-181 (2001).</li><li>Ricardo, R., Phelan, K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Trypsinizing+and+subculturing+mammalian+cells.">Trypsinizing and subculturing mammalian cells.</a> J. Vis. Exp. (16), e755 (2008).</li><li>. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Using+a+Hemacytometer+to+Count+Cells.">Using a Hemacytometer to Count Cells.</a> Basic Methods in Cellular and Molecular Biology. , (2014).</li><li>Mahmood, T., Yang, P. C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Western+blot:+technique,+theory,+and+trouble+shooting.">Western blot: technique, theory, and trouble shooting.</a> N. Am. J. Med. Sci. 4 (9), 429-434 (2012).</li><li>Streit, S., Michalski, C. W., Erkan, M., Kleeff, J., Friess, H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Northern+blot+analysis+for+detection+and+quantification+of+RNA+in+pancreatic+cancer+cells+and+tissues.">Northern blot analysis for detection and quantification of RNA in pancreatic cancer cells and tissues.</a> Nat. Protoc. 4 (1), 37-43 (2009).</li><li>Morgan, E., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cytometric+bead+array:+a+multiplexed+assay+platform+with+applications+in+various+areas+of+biology.">Cytometric bead array: a multiplexed assay platform with applications in various areas of biology.</a> Clin. Immunol. 110 (3), 252-266 (2004).</li><li>Xu, M., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+abnormal+expression+of+retinoic+acid+receptor-beta,+p+53+and+Ki67+protein+in+normal,+premalignant+and+malignant+esophageal+tissues.">The abnormal expression of retinoic acid receptor-beta, p 53 and Ki67 protein in normal, premalignant and malignant esophageal tissues.</a> World J. Gastroenterol. 8 (2), 200-202 (2002).</li><li>Moll, R., Divo, M., Langbein, L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+human+keratins:+biology+and+pathology.">The human keratins: biology and pathology.</a> Histochem. Cell Biol. 129 (6), 705-733 (2008).</li><li>Rice, R. H., Green, H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Presence+in+human+epidermal+cells+of+a+soluble+protein+precursor+of+the+cross-linked+envelope:+activation+of+the+cross-linking+by+calcium+ions.">Presence in human epidermal cells of a soluble protein precursor of the cross-linked envelope: activation of the cross-linking by calcium ions.</a> Cell. 18 (3), 681-694 (1979).</li><li>Eves, P., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Melanoma+invasion+in+reconstructed+human+skin+is+influenced+by+skin+cells+-+investigation+of+the+role+of+proteolytic+enzymes.">Melanoma invasion in reconstructed human skin is influenced by skin cells - investigation of the role of proteolytic enzymes.</a> Clin. Exp. Metastasis. 20 (8), 685-700 (2003).</li></ol>

The authors have nothing to disclose.

This manuscript describes the production and characterization of a biologically relevant human esophageal mucosal model suitable for use as an experimental platform to study the impact of exposure to environmental stressors upon the esophageal epithelium.
The most critical steps for the successful production of a human esophageal mucosal model are: ensuring that the majority of the epithelial cells remain proliferative and have not already begun to differentiate prior to seeding them on the sc...

The esophageal mucosa comprises a stratified, squamous epithelium above a layer of connective tissue, the lamina propria, and is one of the first sites to encounter ingested environmental stressors. Exposure to dietary toxins is implicated in the development of esophageal squamous carcinoma, while duodenogastro-esophageal reflux is a critical factor in the pathogenesis of Barrett&#8217;s Metaplasia, which is associated with increased risk of progression to esophageal adenocarcinoma. Esophageal carcinomas are the 8th most common malignant tumor in UK males and esophageal adenocarcinoma is rapidly increasing in the Western world1. Furthermore, there has been little improvement in disease prognosis, with an overall 5-year survival rate of around 15%. Consequently there is a need for experimental platforms to investigate the impact of exposure to environmental stressors on this esophageal epithelium and their potential involvement in the development of metaplasia or neoplasia.
Although immortalized or tumor cell lines allow researchers to study the response of epithelial cells to these stressors in vitro, they remain proliferative and fail to differentiate into the mature epithelial cells found on the uppermost layers of the esophageal mucosa. Furthermore, cells lines that have already undergone tumorigenesis may provide only limited information regarding the initial responses of normal cells within the epithelium to environmental factors; and this is the stage when the potential for therapeutic intervention may be highest. Finally, conventional cell culture systems fail to capture the potentially important interactions between epithelial and mesenchymal cells and between these cells and the surrounding matrix that occur within tissues in vivo.
Animal models provide a more realistic microenvironment for studying the responses of the esophageal epithelium and can incorporate the artificial induction of gastro-esophageal reflux disease2. However it can be more challenging to manipulate the environmental stressors in these models and they may not fully represent the response within the human esophagus.
Other experimental human esophageal models have been developed that utilize primary cells, immortalized cells or tumor cell lines on a collagen, or combined collagen/Matrigel, scaffold containing fibroblasts3,4. It is less labor intensive to generate these scaffolds than the acellular esophageal scaffold described in this manuscript, and these organotypic models provide a useful tool, particularly in the study of tumor invasion5,6, where tumor cell infiltration into the collagen gel can be readily observed. However these collagen gels have non-native mechanical properties and lack certain features of the original tissue, including a specific basement membrane and the appropriate surface topography. This can influence the behavior of cells resulting in, for example, poorer adhesion between the epithelium and scaffold when using a collagen gel scaffold7. As a consequence the acellular porcine esophageal scaffold was developed, with the advantage of being a more biologically realistic scaffold and thus more appropriate for use as an experimental platform. It has also been shown that it is better to incorporate primary cells into the esophageal constructs than immortalized esophageal epithelial cell lines, such as Het-1A, since these cells form a multi-layered epithelium but fail to stratify or differentiate4,7,8.
Consequently, this protocol has been adapted from a method already in use in the MacNeil laboratory for making tissue engineered skin and oral mucosa9,10 and incorporates a de-cellularized porcine esophageal scaffold combined with primary human esophageal epithelial cells and fibroblasts. This protocol produces a mature, stratified epithelium, similar to that of the normal human esophagus as demonstrated by CK4, CK14, Ki67 and involucrin staining. The resulting model provides an experimental platform to study responses to environmental stressors, and has been used effectively to investigate changes in gene expression in the esophageal epithelium in response to refluxate components11.

<table border="0" cellpadding="0" cellspacing="0">
	<tbody>
		<tr>
			<td>Trypsin</td>
			<td>BD Biosciences</td>
			<td align="right">215240</td>
			<td>Prepare 0.1% w/v solution in PBS and filter sterilise. Warm in 37&#176;C water bath before use</td>
		</tr>
		<tr>
			<td>DMEM</td>
			<td>Labtech</td>
			<td>LM-D1112</td>
			<td>Warm in 37&#176;C water bath before use</td>
		</tr>
		<tr>
			<td>Ham&#39;s F12</td>
			<td>Labtech</td>
			<td>LM-H1236</td>
			<td>Warm in 37&#176;C water bath before use</td>
		</tr>
		<tr>
			<td>Foetal Calf Serum</td>
			<td>Labtech</td>
			<td>FB-1090</td>
			<td></td>
		</tr>
		<tr>
			<td>Epidermal Growth Factor</td>
			<td>R+D Systems</td>
			<td>236-EG-200</td>
			<td>Prepare 200 &#181;g/ml stock solution in 10 mM acetic acid, 1% FCS</td>
		</tr>
		<tr>
			<td>Hydorcortisone</td>
			<td>Sigma-Aldrich</td>
			<td>H0396</td>
			<td>Prepare stock solution in PBS and filter sterilise before use</td>
		</tr>
		<tr>
			<td>Adenine</td>
			<td>Sigma-Aldrich</td>
			<td>A2786</td>
			<td>Prepare stock solution in PBS and filter sterilise before use</td>
		</tr>
		<tr>
			<td>Insulin</td>
			<td>Sigma-Aldrich</td>
			<td>I2767</td>
			<td>Prepare 10 mg/ml solution in 0.01M HCl, dilute 1:10 in distilled water and filter sterilise before use</td>
		</tr>
		<tr>
			<td>Transferrin</td>
			<td>Sigma-Aldrich</td>
			<td>T2036</td>
			<td>Prepare stock solution in distilled water and filter sterilise before use</td>
		</tr>
		<tr>
			<td>Triiodothyronine</td>
			<td>Sigma-Aldrich</td>
			<td>T2752</td>
			<td>Prepare stock solution in distilled water and filter sterilise before use</td>
		</tr>
		<tr>
			<td>Cholera toxin</td>
			<td>Sigma-Aldrich</td>
			<td>C8052</td>
			<td>Prepare stock solution in water</td>
		</tr>
		<tr>
			<td>L-Glutamine</td>
			<td>Sigma-Aldrich</td>
			<td>G7513</td>
			<td></td>
		</tr>
		<tr>
			<td>Penicillin-Streptomycin</td>
			<td>Sigma-Aldrich</td>
			<td>P0781</td>
			<td></td>
		</tr>
		<tr>
			<td>Amphotericin B</td>
			<td>Gibco</td>
			<td>15290-026</td>
			<td>Brand name Fungizone</td>
		</tr>
		<tr>
			<td>PBS</td>
			<td>Oxoid</td>
			<td>BR0014</td>
			<td>Dissolve 1 tablet in 100 ml water and autoclave to sterilise</td>
		</tr>
		<tr>
			<td>Collagenase A</td>
			<td>Roche</td>
			<td align="right">10103578001</td>
			<td></td>
		</tr>
		<tr>
			<td>Povidone-iodine solution</td>
			<td>Ecolab</td>
			<td>10830E</td>
			<td>Brand name Videne</td>
		</tr>
		<tr>
			<td>Ethanol</td>
			<td>Sigma-Aldrich</td>
			<td>E7023</td>
			<td></td>
		</tr>
		<tr>
			<td>NaCl</td>
			<td>Sigma-Aldrich</td>
			<td align="right">433209</td>
			<td>Prepare 1M solution and autoclave to sterilise before use (121 &#730;C for 15 min)</td>
		</tr>
		<tr>
			<td>Glycerol</td>
			<td>Sigma-Aldrich</td>
			<td>G2025</td>
			<td>Autoclave to sterilise before use (121 &#730;C for 15 min)</td>
		</tr>
		<tr>
			<td>Chelex 100</td>
			<td>Sigma-Aldrich</td>
			<td>C7901</td>
			<td></td>
		</tr>
		<tr>
			<td>Newborn calf serum</td>
			<td>Gibco</td>
			<td align="right">26010074</td>
			<td></td>
		</tr>
		<tr>
			<td>Progesterone</td>
			<td>Sigma-Aldrich</td>
			<td>P8783</td>
			<td>Prepare stock solution in DMEM and filter sterilise before use</td>
		</tr>
		<tr>
			<td>Ethanolamine</td>
			<td>Sigma-Aldrich</td>
			<td>E9508</td>
			<td>Prepare stock solution in DMEM and filter sterilise before use</td>
		</tr>
		<tr>
			<td>Hydrocortisone</td>
			<td>Sigma-Aldrich</td>
			<td>H0888</td>
			<td>Prepare stock solution in DMEM and filter sterilise before use use</td>
		</tr>
		<tr>
			<td>O-phosphorylethanolamine</td>
			<td>Sigma-Aldrich</td>
			<td>P0503</td>
			<td>Prepare stock solution in DMEM and filter sterilise before use</td>
		</tr>
		<tr>
			<td>ITS (insulin, transferrin, selenium)</td>
			<td>Lonza</td>
			<td>17-838Z</td>
			<td>Used for composite media preparation</td>
		</tr>
		<tr>
			<td>Trypsin-EDTA</td>
			<td>Sigma-Aldrich</td>
			<td>T3924</td>
			<td>Warm in 37&#176;C water bath before use</td>
		</tr>
		<tr>
			<td>EDTA 0.02% solution</td>
			<td>Sigma-Aldrich</td>
			<td>E8008</td>
			<td>Warm in 37&#176;C water bath before use</td>
		</tr>
		<tr>
			<td>T75 culture flask</td>
			<td>VWR</td>
			<td>734-2313</td>
			<td></td>
		</tr>
		<tr>
			<td>50 ml centrifuge tube</td>
			<td>Fisher</td>
			<td align="right">11819650</td>
			<td></td>
		</tr>
		<tr>
			<td>15 ml universal tube</td>
			<td>SLS</td>
			<td>SLS7504</td>
			<td></td>
		</tr>
		<tr>
			<td>180 ml pot</td>
			<td>VWR</td>
			<td>216-2603</td>
			<td></td>
		</tr>
		<tr>
			<td>Petri dish</td>
			<td>SLS</td>
			<td align="right">150350</td>
			<td></td>
		</tr>
		<tr>
			<td>6 well plate</td>
			<td>VWR</td>
			<td>734-2323</td>
			<td></td>
		</tr>
		<tr>
			<td>stainless steel rings</td>
			<td></td>
			<td></td>
			<td>Manufactured in house - medical grade stainless steel, internal diameter 10 mm, external diameter 20 mm</td>
		</tr>
		<tr>
			<td>steel mesh grids</td>
			<td></td>
			<td></td>
			<td>Manufactured in house - sheets have 0.3 cm diameter holes, bent to produce grid 2cm (w) x2 cm (d) x 0.5 cm (h)</td>
		</tr>
		<tr>
			<td>ki67</td>
			<td>Novocastra</td>
			<td>KI67-MM1-L-CE</td>
			<td>Clone MM1 Use at 1:100</td>
		</tr>
		<tr>
			<td>CK4</td>
			<td>Abcam</td>
			<td>ab9004</td>
			<td>Clone 6B10 Use at 1:200</td>
		</tr>
		<tr>
			<td>CK14</td>
			<td>Novocastra</td>
			<td>LL002-L-CE</td>
			<td>Clone LL002 Use at 1:200</td>
		</tr>
		<tr>
			<td>Involucrin</td>
			<td>Novocastra</td>
			<td>INV</td>
			<td>Clone&#160; SY5 Use at 1:100</td>
		</tr>
		<tr>
			<td>OE21</td>
			<td>Sigma-Aldrich</td>
			<td align="right">96062201</td>
			<td></td>
		</tr>
		<tr>
			<td>OE33</td>
			<td>Sigma-Aldrich</td>
			<td align="right">96070808</td>
			<td></td>
		</tr>
		<tr>
			<td>Het-1A</td>
			<td>ATCC-LGC</td>
			<td>CRL-2692</td>
			<td></td>
		</tr>
		<tr>
			<td>Mouse 3T3 fibroblasts</td>
			<td>ATCC-LGC</td>
			<td>CRL-1658</td>
			<td>previously growth arrested by irradiation (60 Gy)</td>
		</tr>
	</tbody>
</table>

production, characterization and potential uses of a 3d tissue-engineered human esophageal mucosal model

The incidence of both esophageal adenocarcinoma and its precursor, Barrett&#8217;s Metaplasia, are rising rapidly in the western world. Furthermore esophageal adenocarcinoma generally has a poor prognosis, with little improvement in survival rates in recent years. These are difficult conditions to study and there has been a lack of suitable experimental platforms to investigate disorders of the esophageal mucosa.
A model of the human esophageal mucosa has been developed in the MacNeil laboratory which, unlike conventional 2D cell culture systems, recapitulates the cell-cell and cell-matrix interactions present in vivo and produces a mature, stratified epithelium similar to that of the normal human esophagus. Briefly, the model utilizes non-transformed normal primary human esophageal fibroblasts and epithelial cells grown within a porcine-derived acellular esophageal scaffold. Immunohistochemical characterization of this model by CK4, CK14, Ki67 and involucrin staining demonstrates appropriate recapitulation of the histology of the normal human esophageal mucosa.
This model provides a robust, biologically relevant experimental model of the human esophageal mucosa. It can easily be manipulated to investigate a number of research questions including the effectiveness of pharmacological agents and the impact of exposure to environmental factors such as alcohol, toxins, high temperature or gastro-esophageal refluxate components. The model also facilitates extended culture periods not achievable with conventional 2D cell culture, enabling, inter alia, the study of the impact of repeated exposure of a mature epithelium to the agent of interest for up to 20 days. Furthermore, a variety of cell lines, such as those derived from esophageal tumors or Barrett&#8217;s Metaplasia, can be incorporated into the model to investigate processes such as tumor invasion and drug responsiveness in a more biologically relevant environment.

This manuscript describes the process required, shown in schematic form in Figure 1, to culture 3D models of the human esophageal epithelium successfully. To confirm the suitability of the model as an experimental platform histological and immunohistochemical studies have been undertaken comparing the cultured tissues with normal human esophageal squamous mucosa.
Histological assessment of the epithelium produced by the method described shows a mature, multi-layered, stratifie...

Watch this Scientific Journal Video about Production, Characterization and Potential Uses of a 3D Tissue-engineered Human Esophageal Mucosal Model at JoVE.com

Production, Characterization and Potential Uses of a 3D Tissue-engineered Human Esophageal Mucosal Model

This manuscript describes the production, characterization and potential uses of a tissue engineered 3D esophageal construct prepared from normal primary human esophageal fibroblast and squamous epithelial cells seeded within a de-cellularized porcine scaffold. The results demonstrate the formation of a mature stratified epithelium similar to the normal human esophagus.

The incidence of both esophageal adenocarcinoma and its precursor, Barrett&#8217;s Metaplasia, are rising rapidly in the western world. Furthermore ...

production-characterization-potential-uses-3d-tissue-engineered-human

Research

JoVE Journal

Bioengineering

10.4K Views.  University of Sheffield. This manuscript describes the production, characterization and potential uses of a tissue engineered 3D esophageal construct prepared from normal primary human esophageal fibroblast and squamous epithelial cells seeded within a de-cellularized porcine scaffold. The results demonstrate the formation of a mature stratified epithelium similar to the normal human esophagus.

Video: Production, Characterization and Potential Uses of a 3D Tissue-engineered Human Esophageal Mucosal Model

Protocol for Relative Hydrodynamic Assessment of Tri-leaflet Polymer Valves

Limitations of currently available prosthetic valves, xenografts, and homografts have prompted a recent resurgence of developments in the area of tri-leaflet polymer valve prostheses. However, identification of a protocol for initial assessment of polymer valve hydrodynamic functionality is paramount during the early stages of the design process. Traditional in vitro pulse duplicator systems are not configured to accommodate flexible tri-leaflet materials; in addition, assessment of polymer valve functionality needs to be made in a relative context to native and prosthetic heart valves under identical test conditions so that variability in measurements from different instruments can be avoided. Accordingly, we conducted hydrodynamic assessment of i) native (n = 4, mean diameter, D = 20 mm), ii) bi-leaflet mechanical (n= 2, D = 23 mm) and iii) polymer valves (n = 5, D = 22 mm) via the use of a commercially available pulse duplicator system (ViVitro Labs Inc, Victoria, BC) that was modified to accommodate tri-leaflet valve geometries. Tri-leaflet silicone valves developed at the University of Florida comprised the polymer valve group. A mixture in the ratio of 35:65 glycerin to water was used to mimic blood physical properties. Instantaneous flow rate was measured at the interface of the left ventricle and aortic units while pressure was recorded at the ventricular and aortic positions. Bi-leaflet and native valve data from the literature was used to validate flow and pressure readings. The following hydrodynamic metrics were reported: forward flow pressure drop, aortic root mean square forward flow rate, aortic closing, leakage&#160;and regurgitant volume, transaortic closing, leakage, and total energy losses. Representative results indicated that hydrodynamic metrics from the three valve groups could be successfully obtained by incorporating a custom-built assembly into a commercially available pulse duplicator system and subsequently, objectively compared to provide insights on functional aspects of polymer valve design.

There has been renewed interest in developing polymer valves. Here, the objectives are to demonstrate the feasibility of modifying a commercial pulse duplicator to accommodate tri-leaflet geometries and to define a protocol to present polymer valve hydrodynamic data in comparison to native and prosthetic valve data collected under near-identical conditions.

Limitations of currently available prosthetic valves, xenografts, and homografts have prompted a recent resurgence of developments in the area of ...

Generation and Grafting of Tissue-engineered Vessels in a Mouse Model

The construction of vascular conduits is a fundamental strategy for surgical repair of damaged and injured vessels resulting from cardiovascular diseases. The current protocol presents an efficient and reproducible strategy in which functional tissue engineered vessel grafts can be generated using partially induced pluripotent stem cell (PiPSC) from human fibroblasts. We designed a decellularized vessel scaffold bioreactor, which closely mimics the matrix protein structure and blood flow that exists within a native vessel, for seeding of PiPSC-endothelial cells or smooth muscle cells prior to grafting into mice. This approach was demonstrated to be advantageous because immune-deficient mice engrafted with the PiPSC-derived grafts presented with markedly increased survival rate 3 weeks after surgery. This protocol represents a valuable tool for regenerative medicine, tissue engineering and potentially patient-specific cell-therapy in the near future.

Here, we present a protocol to generate tissue engineered vessel grafts that are functional for grafting into mice by double seeding partially induced pluripotent stem cell (PiPSC) - derived smooth muscle cells and PiPSC - derived endothelial cells on a decellularized vessel scaffold bioreactor.

The construction of vascular conduits is a fundamental strategy for surgical repair of damaged and injured vessels resulting from cardiovascular diseases. ...

A Hormone-responsive 3D Culture Model of the Human Mammary Gland Epithelium

The process of mammary epithelial morphogenesis is influenced by hormones. The study of hormone action on the breast epithelium using 2D cultures is limited to cell proliferation and gene expression endpoints. However, in the organism, mammary morphogenesis occurs in a 3D environment. 3D culture systems help bridge the gap between monolayer cell culture (2D) and the complexity of the organism. Herein, we describe a 3D culture model of the human breast epithelium that is suitable to study hormone action. It uses the commercially available hormone-responsive human breast epithelial cell line, T47D, and rat tail collagen type 1 as a matrix. This 3D culture model responds to the main mammotropic hormones: estradiol, progestins and prolactin. The influence of these hormones on epithelial morphogenesis can be observed after 1- or 2-week treatment according to the endpoint. The 3D cultures can be harvested for analysis of epithelial morphogenesis, cell proliferation and gene expression.

We describe a 3D culture model of the human breast epithelium that is suitable to study hormone action.

The process of mammary epithelial morphogenesis is influenced by hormones. The study of hormone action on the breast epithelium using 2D cultures is ...

A Combined 3D Tissue Engineered In Vitro/In Silico Lung Tumor Model for Predicting Drug Effectiveness in Specific Mutational Backgrounds

In the present study, we combined an in vitro 3D lung tumor model with an in silico model to optimize predictions of drug response based on a specific mutational background. The model is generated on a decellularized porcine scaffold that reproduces tissue-specific characteristics regarding extracellular matrix composition and architecture including the basement membrane. We standardized a protocol that allows artificial tumor tissue generation within 14 days including three days of drug treatment. Our article provides several detailed descriptions of 3D read-out screening techniques like the determination of the proliferation index Ki67 staining&#39;s, apoptosis from supernatants by M30-ELISA and assessment of epithelial to mesenchymal transition (EMT), which are helpful tools for evaluating the effectiveness of therapeutic compounds. We could show compared to 2D culture a reduction of proliferation in our 3D tumor model that is related to the clinical situation. Despite of this lower proliferation, the model predicted EGFR-targeted drug responses correctly according to the biomarker status as shown by comparison of the lung carcinoma cell lines HCC827 (EGFR -mutated, KRAS wild-type) and A549 (EGFR wild-type, KRAS-mutated) treated with the tyrosine-kinase inhibitor (TKI) gefitinib. To investigate drug responses of more advanced tumor cells, we induced EMT by long-term treatment with TGF-beta-1 as assessed by vimentin/pan-cytokeratin immunofluorescence staining. A flow-bioreactor was employed to adjust culture to physiological conditions, which improved tissue generation. Furthermore, we show the integration of drug responses upon gefitinib treatment or TGF-beta-1 stimulation - apoptosis, proliferation index and EMT - into a Boolean in silico model. Additionally, we explain how drug responses of tumor cells with a specific mutational background and counterstrategies against resistance can be predicted. We are confident that our 3D in vitro approach especially with its in silico expansion provides an additional value for preclinical drug testing in more realistic conditions than in 2D cell culture.

A Combined 3D Tissue Engineered In Vitro/In Silico Lung Tumor Model for Predicting Drug Effectiveness in Specific Mutational Backgrounds

We present a three-dimensional (3D) lung cancer model based on a biological collagen scaffold to study sensitivity towards non-small-cell-lung-cancer-(NSCLC)-targeted therapies. We demonstrate different read-out techniques to determine the proliferation index, apoptosis and epithelial-mesenchymal transition (EMT) status. Collected data are integrated into an in silico model for prediction of drug sensitivity.

In the present study, we combined an in vitro 3D lung tumor model with an in silico model to optimize predictions of drug response based on a specific ...

Development of a Multicellular Three-dimensional Organotypic Model of the Human Intestinal Mucosa Grown Under Microgravity

Because cells growing in a three-dimensional (3-D) environment have the potential to bridge many gaps of cell cultivation in 2-D environments (e.g., flasks or dishes). In fact, it is widely recognized that cells grown in flasks or dishes tend to de-differentiate and lose specialized features of the tissues from which they were derived. Currently, there are mainly two types of 3-D culture systems where the cells are seeded into scaffolds mimicking the native extracellular matrix (ECM): (a) static models and (b) models using bioreactors. The first breakthrough was the static 3-D models. 3-D models using bioreactors such as the rotating-wall-vessel (RWV) bioreactors are a more recent development. The original concept of the RWV bioreactors was developed at NASA&#39;s Johnson Space Center in the early 1990s and is believed to overcome the limitations of static models such as the development of hypoxic, necrotic cores. The RWV bioreactors might circumvent this problem by providing fluid dynamics that allow the efficient diffusion of nutrients and oxygen. These bioreactors consist of a rotator base that serves to support and rotate two different formats of culture vessels that differ by their aeration source type: (1) Slow Turning Lateral Vessels (STLVs) with a co-axial oxygenator in the center, or (2) High Aspect Ratio Vessels (HARVs) with oxygenation via a flat, silicone rubber gas transfer membrane. These vessels allow efficient gas transfer while avoiding bubble formation and consequent turbulence. These conditions result in laminar flow and minimal shear force that models reduced gravity (microgravity) inside the culture vessel. Here we describe the development of a multicellular 3-D organotypic model of the human intestinal mucosa composed of an intestinal epithelial cell line and primary human lymphocytes, endothelial cells and fibroblasts cultured under microgravity provided by the RWV bioreactor.

Cells growing in a three-dimensional (3-D) environment represent a marked improvement over cell cultivation in 2-D environments (e.g., flasks or dishes). Here we describe the development of a multicellular 3-D organotypic model of the human intestinal mucosa cultured under microgravity provided by rotating-wall-vessel (RWV) bioreactors.

Because cells growing in a three-dimensional (3-D) environment have the potential to bridge many gaps of cell cultivation in 2-D environments (e.g., ...

Three-dimensional Tissue Engineered Aligned Astrocyte Networks to Recapitulate Developmental Mechanisms and Facilitate Nervous System Regeneration

Neurotrauma and neurodegenerative disease often result in lasting neurological deficits due to the limited capacity of the central nervous system (CNS) to replace lost neurons and regenerate axonal pathways. However, during nervous system development, neuronal migration and axonal extension often occur along pathways formed by other cells, referred to as &#34;living scaffolds&#34;. Seeking to emulate these mechanisms and to design a strategy that circumvents the inhibitory environment of the CNS, this manuscript presents a protocol to fabricate tissue engineered astrocyte-based &#34;living scaffolds&#34;. To create these constructs, we employed a novel biomaterial encasement scheme to induce astrocytes to self-assemble into dense three-dimensional bundles of bipolar longitudinally-aligned somata and processes. First, hollow hydrogel micro-columns were assembled, and the inner lumen was coated with collagen extracellular-matrix. Dissociated cerebral cortical astrocytes were then delivered into the lumen of the cylindrical micro-column and, at a critical inner diameter of &#60;350 &#181;m, spontaneously self-aligned and contracted to produce long fiber-like cables consisting of dense bundles of astrocyte processes and collagen fibrils measuring &#60;150 &#181;m in diameter yet extending several cm in length. These engineered living scaffolds exhibited &#62;97% cell viability and were virtually exclusively comprised of astrocytes expressing a combination of the intermediate filament proteins glial-fibrillary acidic protein (GFAP), vimentin, and nestin. These aligned astrocyte networks were found to provide a permissive substrate for neuronal attachment and aligned neurite extension. Moreover, these constructs maintain integrity and alignment when extracted from the hydrogel encasement, making them suitable for CNS implantation. These preformed constructs structurally emulate key cytoarchitectural elements of naturally occurring glial-based &#34;living scaffolds&#34; in vivo. As such, these engineered living scaffolds may serve as test-beds to study neurodevelopmental mechanisms in vitro or facilitate neuroregeneration by directing neuronal migration and/or axonal pathfinding following CNS degeneration in vivo.

We showcase the development of self-assembled, three-dimensional bundles of longitudinally aligned astrocytic somata and processes within a novel biomaterial encasement. These engineered &#34;living scaffolds&#34;, exhibiting micron-scale diameter yet extending centimeters in length, may serve as test-beds to study neurodevelopmental mechanisms or facilitate neuroregeneration by directing neuronal migration and/or axonal pathfinding.

Neurotrauma and neurodegenerative disease often result in lasting neurological deficits due to the limited capacity of the central nervous system (CNS) to ...

A Novel Tenorrhaphy Suture Technique with Tissue Engineered Collagen Graft to Repair Large Tendon Defects

Surgical management of large tendon defects with tendon grafts is challenging, as there are a finite number of sites where donors can be readily identified and used. Currently, this gap is filled with tendon auto-, allo-, xeno-, or artificial grafts, but clinical methods to secure them are not necessarily translatable to animals because of the scale. In order to evaluate new biomaterials or study a tendon graft made up of collagen type 1, we have developed a modified suture technique to help maintain the engineered tendon in alignment with the tendon ends. Mechanical properties of these grafts are inferior to the native tendon. To incorporate engineered tendon into clinically relevant models of loaded repair, a strategy was adopted to offload the tissue engineered tendon graft and allow for the maturation and integration of the engineered tendon in vivo until a mechanically sound neo-tendon was formed. We describe this technique using incorporation of the collagen type 1 tissue engineered tendon construct.

In this paper, we present an in vitro and in situ protocol to repair a tendon gap of up to 1.5 cm by filling it with engineered collagen graft. This was performed by developing a modified suture technique to take the mechanical load until the graft matures into the host tissue.

Surgical management of large tendon defects with tendon grafts is challenging, as there are a finite number of sites where donors can be readily ...

Production of Elastin-like Protein Hydrogels for Encapsulation and Immunostaining of Cells in 3D

Two-dimensional (2D) tissue culture techniques have been essential for our understanding of fundamental cell biology. However, traditional 2D tissue culture systems lack a three-dimensional (3D) matrix, resulting in a significant disconnect between results collected in vitro and in vivo. To address this limitation, researchers have engineered 3D hydrogel tissue culture platforms that can mimic the biochemical and biophysical properties of the in vivo cell microenvironment. This research has motivated the need to develop material platforms that support 3D cell encapsulation and downstream biochemical assays. Recombinant protein engineering offers a unique toolset for 3D hydrogel material design and development by allowing for the specific control of protein sequence and therefore, by extension, the potential mechanical and biochemical properties of the resultant matrix. Here, we present a protocol for the expression of recombinantly-derived elastin-like protein (ELP), which can be used to form hydrogels with independently tunable mechanical properties and cell-adhesive ligand concentration. We further present a methodology for cell encapsulation within ELP hydrogels and subsequent immunofluorescent staining of embedded cells for downstream analysis and quantification.

Recombinant protein-engineered hydrogels are advantageous for 3D cell culture as they allow for complete tunability of the polymer backbone and therefore, the cell microenvironment. Here, we describe the process of recombinant elastin-like protein purification and its application in 3D hydrogel cell encapsulation.

Two-dimensional (2D) tissue culture techniques have been essential for our understanding of fundamental cell biology. However, traditional 2D tissue ...

Detection of Endotoxin in Nano-formulations Using Limulus Amoebocyte Lysate (LAL) Assays

When present in pharmaceutical products, a Gram-negative bacterial cell wall component endotoxin (often also called lipopolysaccharide) can cause inflammation, fever, hypo- or hypertension, and, in extreme cases, can lead to tissue and organ damage that may become fatal. The amounts of endotoxin in pharmaceutical products, therefore, are strictly regulated. Among the methods available for endotoxin detection and quantification, the Limulus Amoebocyte Lysate (LAL) assay is commonly used worldwide. While any pharmaceutical product can interfere with the LAL assay, nano-formulations represent a particular challenge due to their complexity. The purpose of this paper is to provide a practical guide to researchers inexperienced in estimating endotoxins in engineered nanomaterials and nanoparticle-formulated drugs. Herein, practical recommendations for performing three LAL formats including turbidity, chromogenic and gel-clot assays are discussed. These assays can be used to determine endotoxin contamination in nanotechnology-based drug products, vaccines, and adjuvants.

Detection of Endotoxin in Nano-formulations Using Limulus Amoebocyte Lysate LAL Assays

Detection of endotoxins in engineered nanomaterials represents one of the grand challenges in the field of nanomedicine. Here, we present a case study that describes the framework composed of three different LAL formats to estimate potential endotoxin contamination in nanoparticles.

When present in pharmaceutical products, a Gram-negative bacterial cell wall component endotoxin (often also called lipopolysaccharide) can cause ...

Seeding and Implantation of a Biosynthetic Tissue-engineered Tracheal Graft in a Mouse Model

Treatment options for congenital or secondary long segment tracheal defects have historically been limited due to an inability to replace functional tissue. Tissue engineering holds great promise as a potential solution with its ability to integrate cells and signaling molecules into a 3-dimensional scaffold. Recent work with tissue engineered tracheal grafts (TETGs) has seen some success but their translation has been limited by graft stenosis, graft collapse, and delayed epithelialization. In order to investigate the mechanisms driving these issues, we have developed a mouse model for tissue engineered tracheal graft implantation. TETGs were constructed using electrospun polymers polyethylene terephthalate (PET) and polyurethane (PU) in a mixture of PET and PU (20:80 percent weight). Scaffolds were then seeded using bone marrow mononuclear cells isolated from 6-8 week-old C57BL/6 mice by gradient centrifugation. Ten million cells per graft were seeded onto the lumen of the scaffold and allowed to incubate overnight before implantation between the third and seventh tracheal rings. These grafts were able to recapitulate the findings of stenosis and delayed epithelialization as demonstrated by histological analysis and lack of Keratin 5 and Keratin 14 basal epithelial cells on immunofluorescence. This model will serve as a tool for investigating cellular and molecular mechanisms involved in host remodeling.

Graft stenosis poses a critical obstacle in tissue engineered airway replacement. To investigate cellular mechanisms underlying stenosis, we utilize a murine model of tissue engineered tracheal replacement with seeded bone marrow mononuclear cells (BM-MNC). Here, we detail our protocol, including scaffold manufacturing, BM-MNC isolation, graft seeding, and implantation.

Treatment options for congenital or secondary long segment tracheal defects have historically been limited due to an inability to replace functional ...