The authors acknowledge financial support from a ZonMW-VICI grant 918.11.635 (The Netherlands). The authors would like to thank the tool shop of the Vrije Universiteit Amsterdam for their practical suggestions and for manufacturing the setup components and Jarno Voortman of Carl Zeiss Netherlands for helpful advice on microscopy. Marjolein Blaauboer was a great support in critically commenting on several drafts of the manuscript.

All experimental procedures were conducted in accordance with the Netherlands Experiments on Animals Act.
NOTE: The submerged filter paper sandwich method is modified from 1.
1. Submerged Filter Paper Sandwich Preparation
<ol>
	<li>Pannett-Compton (PC)-saline27,28
	<ol>
		<li>Prepare stock solutions A (1 L of ultrapure H2O, 121 g of NaCl, 15.5 g of KCl, 10.42 g of CaCl2&#183;H2O, and 12.7 g of MgCl2&#183;6H2O) and B (1 L of ultrapure H2O, 2.365 g of Na2HPO4&#183;2H2O, and 0.188 g of NaH2PO4&#183;2H2O) in clean 1-L bottles. Store them at 4 &#176;C.</li>
		<li>Prepare 1 L of PC-saline by mixing 900 ml of ultrapure H2O with 40 ml of stock solution A and 60 ml of stock solution B (in this order to avoid precipitation). Prepare PC-saline freshly from stock solutions A and B every week. 
		NOTE: Stock solutions can be stored at 4 &#176;C for several months. Autoclaving and/or adding antibiotics or antimycotics are not necessary.</li>
	</ol>
	</li>
	<li>Incubation of fertilized chicken eggs
	<ol>
		<li>In a humidified incubator, lay the eggs on their side and incubate them at 37.5 &#176;C until they reach the desired age. 
		NOTE: Store eggs no longer than two weeks (preferably at 12 - 15 &#176;C) prior to the experiment, as the hatchability will decline significantly</li>
	</ol>
	</li>
	<li>Filter paper carriers (adapted from 1)
	<ol>
		<li>If available, use a laser cutting machine to cut hourglass-shaped filter paper carriers from thick filtration paper (28 mm x 22 mm). Taper the width in the middle from 22 mm to 10.4 mm. Cut out a central elliptical aperture (10.6 mm x 5.5 mm), with the longer axis of the ellipse orientated parallel to the larger side of the filter paper carrier (Figure 1-M).
		<ol>
			<li>Optionally, prepare a cardboard stencil with the correct dimensions and transfer its outline and that of the central aperture to thick filtration paper using a pencil. Cut out the filter paper carrier using fine scissors.</li>
		</ol>
		</li>
		<li>Cut two identical filter paper carriers for each embryo to be explanted. Prepare extra filter paper carriers as backup in case an embryo gets lost during explanting.</li>
	</ol>
	</li>
	<li>Temperature-controlled oil bath (on the day of the experiment)
	<ol>
		<li>Place the temperature-controlled beaker in the center of the motorized x-y-stage of the upright zoom microscope and connect the beaker to its temperature controller.</li>
		<li>Put four large stainless steel rings (30 mm outer diameter, 4 mm in height, 1.5 mm wall thickness) into a 6 cm Petri dish to act as weights and place the dish in the middle of the temperature-controlled beaker. 
		NOTE: This Petri dish just serves as a placeholder to adjust the oil level.</li>
		<li>Fill the temperature-controlled beaker with 130 ml of light mineral oil. Adjust the oil level if necessary so that it ends about 3 mm below the upper edge of the 6 cm Petri dish.</li>
		<li>Remove the 6 cm Petri dish from the temperature-controlled beaker and set the temperature to 40 &#176;C.</li>
	</ol>
	</li>
</ol>
2. Submerged Filter Paper Sandwich Production
<ol>
	<li>Culture medium (on the day of the experiment)
	<ol>
		<li>Pour 30 ml of PC-saline (as prepared in steps 1.1.1 to 1.1.2) into a 50 ml centrifuge tube. Prepare one 50 ml centrifuge tube filled with 30 ml of PC-saline for every two embryos to be explanted.</li>
		<li>Carefully crack a non-incubated egg into a 10 cm Petri dish.</li>
		<li>Harvest thin albumen by moving a plastic transfer pipette along the walls of the Petri dish and sucking in the thin albumen. Collect 30 ml thin albumen in a 50 ml centrifuge tube for each two embryos to be explanted. Make sure to obtain only the thin albumen. 
		NOTE: Usually 3 - 4 eggs allow the harvest of about 30 ml of thin albumen.</li>
		<li>Pour 20 ml of thin albumen into every PC-saline filled 50 ml centrifuge tube (as prepared in step 2.1.1).</li>
		<li>Mix the PC-saline with the thin albumen by gently inverting the tubes several times. Let it settle for several minutes and check if the mixture, called culture medium from here onwards, is clear. If the culture medium is not clear, prepare fresh PC-saline from the stock solution and harvest fresh thin albumen.</li>
	</ol>
	</li>
	<li>Place two small stainless steel rings (20 mm outer diameter, 4 mm in height, 1.5 mm wall thickness, 6.5 mm gap in the ring) as far apart as possible in a fresh 6 cm plastic Petri dish and fill it with 22 ml of culture medium (as prepared in steps 1.4.1 to 1.4.4) using a 25 ml plastic pipette (Figure 1-H). Make sure that debris accumulated on top of the medium remains in the centrifuge tube.</li>
	<li>Remove any debris or bubbles from the medium using a plastic transfer pipette.</li>
	<li>Fill a 10 cm Petri dish with 75 ml of PC-saline (to be used in step 2.15).</li>
	<li>Remove an egg from the incubator and let it rest on the bench on its side for 1 min to let the embryo come to the top of the yolk.</li>
	<li>Carefully crack the egg into a Petri dish (Figure 1-A). Soak the edge of a piece of fine tissue paper in the thick albumen and center the blastoderm by pulling, if necessary.</li>
	<li>Remove most of the thin and thick albumen from the Petri dish using a plastic transfer pipette (with the tip cut off to facilitate the uptake of the thick albumen).</li>
	<li>Create a window in the thick albumen around the embryo by gently wiping away the thick albumen with a piece of tissue paper, moving away from the center (Figure 1-B). Prevent the tissue paper from attaching to the vitelline membrane.</li>
	<li>Using tweezers, carefully place a filter paper carrier on the vitelline membrane around the embryo, with the longer axis of the elliptical aperture parallel to the anterior-posterior axis of the embryo (Figure 1-C).</li>
	<li>Pinch one tip of the nail scissors through the vitelline membrane close to the filter paper carrier and quickly cut around the whole filter paper carrier (Figure 1-D).</li>
	<li>Using tweezers, lift the filter paper carrier away from the yolk in an oblique direction parallel to the anterior-posterior axis of the embryo (Figure 1-E).</li>
	<li>Turn the filter paper carrier around to have the ventral side of the embryo on top and submerge it in the PC-saline. Immerse the filter paper carrier along the anterior-posterior axis of the embryo in an oblique direction.</li>
	<li>Get rid of all the yolk still attached the vitelline membrane and the blastoderm by gently flushing it with PC-saline from a plastic transfer pipette. Keep the entirety of the filter paper carrier submerged at all times (Figure 1-F).</li>
	<li>Remove the filter paper carrier from the PC-saline along the anterior-posterior axis of the embryo in an oblique direction and get rid of the excess liquid by dabbing the edge of the filter paper carrier on a tissue paper.</li>
	<li>Hold the filter paper horizontally, with the ventral side of the embryo facing up, and place another filter paper carrier on top of the first one, using a second pair of tweezers. Their apertures should match exactly, thereby sandwiching the embryo between the two layers of filter paper (Figure 1-G).</li>
	<li>Immediately submerge the filter paper carrier sandwich into the culture medium in an oblique direction along the anterior-posterior-axis of the embryo. Place it in the area spanning the space between the two steel rings (Figure 1-H).</li>
	<li>Fix the filter paper sandwich by placing two more steel rings on top of the other two, making sure that the aperture with the embryo remains completely uncovered (Figure 1-I).</li>
	<li>Check the medium level and make sure that the upper spacer is just submerged in the medium. If necessary, add or remove small amounts of medium.</li>
	<li>Carefully place the Petri dish in the center of the temperature-controlled oil bath and stabilize the dish laterally by placing three large stainless steel rings (30 mm outer diameter, 4 mm in height, 1.5 mm wall thickness) next to the dish in the oil. Make sure that the steel rings touch the sides of the dish (Figure 1-J).</li>
	<li>Slowly pipette approximately 6 ml of light mineral oil on top of the medium with a plastic transfer pipette, so that the medium is covered with a continuous layer of mineral oil (Figure 1-K).</li>
	<li>Set up the time-lapse acquisition. 
	NOTE: Imaging the embryos as horizontal panoramas of five overlapping sub-images (tiles) allows detailed imaging (5X&#160;objective), with a general overview of the morphology29-30. Imaging intervals between 3 and 10 min allow for the detailed tracking of morphological changes31, and the acquisition of small z-stacks (five to seven different planes with a distance of 30 &#181;m) compensates for much of the thickening and turning of the embryo30. Z-planes with the highest contrast can be selected before further processing32 of single frames into time-lapse movies (see the Representative Results section for detailed information on image acquisition).</li>
</ol>
<img alt="Figure 1" src="/files/ftp_upload/54636/54636fig1.jpg" /> 
Figure 1: Setting up the Submerged Filter Paper Sandwich. (A) An egg is cracked into a Petri dish. (B) Most of the thick and thin albumen is removed from the Petri dish with a plastic transfer pipette (not shown). Then, a window in the thick albumen is created around the embryo by gently wiping away the thick albumen with a tissue paper. (C) A filter paper carrier is placed around the blastoderm on top of the yolk. (D) The filter paper carrier is cut loose from the surrounding vitelline membrane and (E) removed from the top of the yolk. (F) The remaining yolk is carefully washed away in a PC-saline bath. (G) The embryo is sandwiched with a second identical filter paper carrier. (H) The filter paper sandwich is submerged in the medium and positioned on two metal stainless steel rings (embryo facing dorsal or ventral side up). (I) Two rings stabilize the sandwich from the top. (J) The Petri dish containing the embryo is transferred to the temperature-controlled oil bath. Stainless steel rings stabilize the&#160;Petri dish laterally. (K) The culture medium is covered with a layer of mineral oil. (L) Schematic of the submerged filter sandwich. (M) Dimensions of the filter paper carriers used for the submerged filter paper sandwich. <a href="http://cloudfront.jove.com/files/ftp_upload/54636/54636fig1large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>

<ol>
	<li>Chapman, S. C., Collignon, J., Schoenwolf, G. C., Lumsden, A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Improved+method+for+chick+whole-embryo+culture+using+a+filter+paper+carrier.">Improved method for chick whole-embryo culture using a filter paper carrier.</a> Dev. Dyn. 220 (3), 284-289 (2001).</li><li>Rozbicki, E., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Myosin-II-mediated+cell+shape+changes+and+cell+intercalation+contribute+to+primitive+streak+formation.">Myosin-II-mediated cell shape changes and cell intercalation contribute to primitive streak formation.</a> Nat. Cell Biol. 17 (4), 397-408 (2015).</li><li>Smith, J. L., Schoenwolf, G. C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Neurulation:+Coming+to+closure.">Neurulation: Coming to closure.</a> Trends Neurosci. 20 (97), 510-517 (1997).</li><li>Schoenwolf, G. C., Sheard, P. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Shaping+and+bending+of+the+avian+neural+plate+as+analysed+with+a+fluorescent-histochemical+marker.">Shaping and bending of the avian neural plate as analysed with a fluorescent-histochemical marker.</a> Development. 105 (1), 17-25 (1989).</li><li>Colas, J. F., Schoenwolf, G. C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Towards+a+cellular+and+molecular+understanding+of+neurulation.">Towards a cellular and molecular understanding of neurulation.</a> Dev. Dyn. 221 (2), 117-145 (2001).</li><li>Pourqui&#233;, O. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+chick+embryo:+a+leading+model+in+somitogenesis+studies.">The chick embryo: a leading model in somitogenesis studies.</a> Mech. Dev. 121 (9), 1069-1079 (2004).</li><li>Maenner, J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Cardiac+looping+in+the+chick+embryo:+A+morphological+review+with+special+reference+to+terminological+and+biomechanical+aspects+of+the+looping+process.">Cardiac looping in the chick embryo: A morphological review with special reference to terminological and biomechanical aspects of the looping process.</a> Anat. Rec. 259 (3), 248-262 (2000).</li><li>Wittig, J. G., M&#252;nsterberg, A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+Early+Stages+of+Heart+Development+Insights+from+Chicken+Embryos.">The Early Stages of Heart Development Insights from Chicken Embryos.</a> J. Cardiovasc. Dev. Dis. 3 (2), (2016).</li><li>Layer, P. G., Alber, R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Patterning+of+chick+brain+vesicles+as+revealed+by+peanut+agglutinin+and+cholinesterases.">Patterning of chick brain vesicles as revealed by peanut agglutinin and cholinesterases.</a> Development. 109 (3), 613-624 (1990).</li><li>Nakamura, H., Nakano, K. E., Igawa, H. H., Takagi, S., Fujisawa, H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Plasticity+and+rigidity+of+differentiation+of+brain+vesicles+studied+in+quail-chick+chimeras.">Plasticity and rigidity of differentiation of brain vesicles studied in quail-chick chimeras.</a> Cell Differ. 19 (3), 187-193 (1986).</li><li>Garcia-Lopez, R., Pombero, A., Martinez, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Fate+map+of+the+chick+embryo+neural+tube.">Fate map of the chick embryo neural tube.</a> Dev. Growth Differ. 51 (3), 145-165 (2009).</li><li>Andermatt, I., Stoeckli, E. T. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=RNAi-based+gene+silencing+in+chicken+brain+development.">RNAi-based gene silencing in chicken brain development.</a> Methods Mol. Biol. 1082, 253-266 (2014).</li><li>Tufan, A. C., Akdogan, I., Adiguzel, E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Shell-less+culture+of+the+chick+embryo+as+a+model+system+in+the+study+of+developmental+neurobiology.">Shell-less culture of the chick embryo as a model system in the study of developmental neurobiology.</a> Neuroanatomy. 3 (1), 8-11 (2004).</li><li>Endo, Y. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Chick+embryo+culture+and+electroporation.">Chick embryo culture and electroporation.</a> Curr. Protoc. Cell Biol. , Unit 19.15 (2012).</li><li>Hamburger, V., Hamilton, H. L. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+series+of+normal+stages+in+the+development+of+the+chick+embryo.">A series of normal stages in the development of the chick embryo.</a> J. Morphol. 88 (1), 49-92 (1951).</li><li>Kulesa, P. M., Bailey, C. M., Cooper, C., Fraser, S. E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=In+Ovo+Live+Imaging+of+Avian+Embryos.">In Ovo Live Imaging of Avian Embryos.</a> Cold Spring Harb. Protoc. 2010 (6), (2010).</li><li>Borwompinyo, S., Brake, J., Mozdziak, P. E., Petitte, J. N. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Culture+of+chicken+embryos+in+surrogate+eggshells.">Culture of chicken embryos in surrogate eggshells.</a> Poult Sci. 84 (9), 1477-1482 (2005).</li><li>Yalcin, H. C., Shekhar, A., Rane, A. A., Butcher, J. T. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=An+ex-ovo+Chicken+Embryo+Culture+System+Suitable+for+Imaging+and+Microsurgery+Applications.">An ex-ovo Chicken Embryo Culture System Suitable for Imaging and Microsurgery Applications.</a> J. Vis. Exp. (44), e2154 (2010).</li><li>Auerbach, R., Folkman, J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+simple+procedure+for+the+long-term+cultivation+of+chicken+embryos.">A simple procedure for the long-term cultivation of chicken embryos.</a> Dev. Biol. 41 (2), 391-394 (1974).</li><li>New, D. A. T. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+New+Technique+for+the+Cultivation+of+the+Chick+Embryo+in+vitro.">A New Technique for the Cultivation of the Chick Embryo in vitro.</a> J. Embryol. Exp. Morphol. 3 (4), 320-331 (1955).</li><li>Stern, C. D., Bachvarova, R. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Early+chick+embryos+in+vitro.">Early chick embryos in vitro.</a> Int. J. Dev. Biol. 41 (2), 379-387 (1997).</li><li>Nagai, H., Lin, M. C., Sheng, G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+modified+cornish+pasty+method+for+ex+ovo+culture+of+the+chick+embryo.">A modified cornish pasty method for ex ovo culture of the chick embryo.</a> Genesis. 49 (1), 46-52 (2011).</li><li>Connolly, D., McNaugbton, L. A., Krumlauf, R., Cooke, J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Improved+in+vitro+development+of+the+chick+embryo+using+roller-tube+culture.">Improved in vitro development of the chick embryo using roller-tube culture.</a> Trends Genet. 11 (7), 259-260 (1995).</li><li>Rupp, P. A., Rongish, B. J., Czirok, A., Little, C. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Culturing+of+avian+embryos+for+time-lapse+imaging.">Culturing of avian embryos for time-lapse imaging.</a> Biotechniques. 34 (2), 274-278 (2003).</li><li>Martins, G. G., Rifes, P., Ama&#226;ndio, R., Rodrigues, G., Palmeirim, I., Thorsteinsd&#243;ttir, S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Dynamic+3D+cell+rearrangements+guided+by+a+fibronectin+matrix+underlie+somitogenesis.">Dynamic 3D cell rearrangements guided by a fibronectin matrix underlie somitogenesis.</a> PLoS One. 4 (10), e7429 (2009).</li><li>Nagai, H., Sezaki, M., Nakamura, H., Sheng, G. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Extending+the+limits+of+avian+embryo+culture+with+the+modified+Cornish+pasty+and+whole-embryo+transplantation+methods.">Extending the limits of avian embryo culture with the modified Cornish pasty and whole-embryo transplantation methods.</a> Methods. 66 (3), 441-446 (2014).</li><li>Pannett, C., Compton, A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=The+Cultivation+of+Tissues+in+Saline+Embryonic+Juice.">The Cultivation of Tissues in Saline Embryonic Juice.</a> Lancet. 203 (5243), 381-384 (1924).</li><li>Voiculescu, O., Papanayotou, C., Stern, C. D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Spatially+and+temporally+controlled+electroporation+of+early+chick+embryos.">Spatially and temporally controlled electroporation of early chick embryos.</a> Nat. Protoc. 3 (3), 419-426 (2008).</li><li>. GmbH ZEN 2 - (blue edition) - Software Guide Available from: <a target="_blank" href="https://www.unige.ch/medecine/bioimaging/files/3914/3765/2064/ZEN_2_blue_edition_-_Software_Guide.pdf">https://www.unige.ch/medecine/bioimaging/files/3914/3765/2064/ZEN_2_blue_edition_-_Software_Guide.pdf</a> (2014)</li><li>Darnell, D. K., Schoenwolf, G. C. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Culture+of+Avian+Embryos.">Culture of Avian Embryos.</a> Dev. Biol. Protoc. Vol. I. 135, 31-38 (2000).</li></ol>

The authors have nothing to disclose.

As a new variant of the well-established EC culture1, the submerged filter paper sandwich facilitates the acquisition of long-term brightfield and darkfield time-lapse movies of the early chick embryo ex ovo by making a temperature- and humidity-controlled incubator around the microscope dispensable. Rather than being cultured on a semi-solid agar-albumen bottom, the embryos are kept fully submerged in a simple culture medium consisting of PC-saline and thin albumen. Evaporation and heat loss are minimized by a layer of mineral oil floating on top of the culture medium. Embryos can be cultured easily, either dorsal or ventral side up, without visible differences in quality. As shown here, embryos in the submerged filter paper sandwich are accessible to microsurgical interventions, like the application of morphogen-soaked beads. Future applications include live fluorescence imaging, microinjections and electroporation, and gene silencing to manipulate and study a wide range of morphogenetic events during ventral (e.g., early heart and somitogenesis) and dorsal (e.g., late gastrulation, neural tube closure, and early brain) development. A time-dependent drug treatment is feasible if the Petri dish containing the filter paper sandwich is replaced with a perfusion chamber, allowing the exchange of the culture medium below the mineral oil layer. The submerged filter paper sandwich will develop its full imaging potential in combination with laser-based imaging (including light-sheet microscopy) and immersion objectives.
Some difficulties with the preparation of the submerged filter paper sandwich will be addressed in the following paragraphs. Although it requires only a moderate amount of training to transfer an embryo from the yolk into the filter paper sandwich, several steps can still significantly influence the quality of the embryo in culture. Before the filter paper carrier is placed onto the yolk, the vitelline membrane around the embryo should be freed from any thick albumen. Only then will the connection between the filter paper and the vitelline membrane be strong enough to withstand the washing in PC-saline. The filter paper carrying the embryo should cross the liquid/air interface as little as possible to minimize the tension on the membranes. Once brought into the PC-saline for washing, the whole filter paper carrier must stay completely submerged at all times. The time in the PC-saline bath must be limited to about 30 - 60 sec, as the vitelline membrane will start releasing from the filter paper. Still, the cleaning of the embryo should be executed very thoroughly, as yolk remnants will later obscure the view of the embryo. During washing, never point the stream from the transfer pipette directly onto the embryo, but always radially away from it. After removing the embryo from the PC-saline, make sure to hold the filter paper horizontally to minimize tension on the embryonic membranes. Then, stabilize the embryo with the second filter paper carrier. Once the second filter paper carrier is placed, avoid creating any lateral tension, which could shift the filter paper carriers relative to each other and tear the embryonic membranes. When the filter paper sandwich is brought into the culture medium, it should also cross the air/liquid interface only once to minimize tension on the membranes. The second pair of stainless steel rings used to stabilize the filter paper sandwich from the top should be placed very slowly and without any pressure to minimize compression of the embryonic membranes. Small ruptures of the area opaca of the embryo usually heal during the first hour of culture, but a damaged embryo can and should always be replaced by a new sample before the oil layer is pipetted on top of the culture medium.
To image an entire embryo or multiple samples for high-resolution time-lapse movies, the microscope must be equipped with a motorized x-y-stage, controlled by the microscope software. It is of crucial importance to have the x-y-stage move with a minimal speed to avoid damage to the embryos and turbulences in the culture medium and the oil, which will decrease the image quality. For the acquisition of the time-lapse movies presented here, the motorized x-y-stage moved with a speed of approximately 1.75 mm/sec. In the future, imaging could be further improved by first moving the stage to the desired position and acquiring the image after a short rest period to let vibrations and turbulences fade away.
As a limitation, potential users should be aware of the relatively long working distance (approximately 1 cm) necessary for this culture method if an upright microscope without immersion objectives is used. This working distance results from the layer of medium and of mineral oil on top of the embryo. In the 6 cm Petri dish, the oil layer has a thickness of approximately 1 - 1.5 mm, and the embryo is submerged approximately 4 mm deep in the culture medium. Depending on the diameter of the objective, the upper edge of the 6 cm Petri dish could also limit access to the embryo. This could be circumvented by using a larger dish.
The working distance from the top could be slightly reduced by minimizing the thicknesses of the liquid layers. In addition, the working distance from below could be minimized by bringing the embryo further down to the bottom of the Petri dish and reducing the thickness of the glass window of the heated beaker. While the protocol was optimized to work with an upright long working distance zoom microscope, it could be fitted to an inverted microscope as well. Future users should keep in mind that submerging the embryo too deeply in the culture medium might lead to O2-diffusion problems, although preliminary experiments suggest that limited diffusion does not seem to be a problem, as long as the embryo is surrounded by a sufficiently-large reservoir of culture medium and the filter paper sandwiched is not pressed to the bottom of the Petri dish.
Another limitation is the temperature control. By adjusting the temperature of the controller for the heated beaker to 40 &#176;C, the temperature in the medium equilibrates to 37.5 &#176;C around the embryos when the medium is covered with mineral oil. This shows that some energy is lost between the bottom of the beaker, where the heating elements and the temperature sensor are located, and the location of the embryos. The temperature control could be optimized by relocating the sensor and redistributing the heating elements.

Embryogenesis has fascinated man since the beginning of history. How do the structure and morphology of an embryo develop in such a well-defined temporal and spatial manner? The chick embryo has become one of the classical vertebrate animal models for embryogenesis for several reasons: It is easily available, inexpensive, transparent in its early stages, and accessible for experimental manipulations, as it develops outside the mother. Moreover, it has an almost flat geometry during early morphogenetic events, such as heart and brain formation, gastrulation, neurulation, and somitogenesis15.
Morphogenetic processes can be understood best if they are studied dynamically, such as through the acquisition of time-lapse images. The chick embryo can be visualized in ovo16 but with poor accessibility for experimental manipulations and limited visibility for transmission light microscopy imaging. Therefore, several techniques have been proposed to culture chick embryos ex ovo, either in whole yolk culture systems13,17-19 or as explant cultures1,20-23. In whole yolk culture systems, the embryo remains on top of the intact yolk, and the whole content of the egg is transferred to another container for incubation. This container can be a surrogate egg shell17, a Petri dish19, or a hammock made of plastic cling wrap13,18. Embryos in whole yolk cultures can ideally be cultured until hatching and are accessible to micromanipulations. These techniques are especially useful for studying the development of embryos after the initiation of blood circulation (which increases the contrast), while younger embryos remain hard to visualize. These early embryos can be imaged best if they are excised from the yolk and cultured as in vitro explants. The explants are easily accessible for experimental manipulations and require less space for culturing. For many years, a technique pioneered by Denis New in 1955 and its variations were the golden standards of explant culture methods for chick embryos, thereby making the embryo accessible for time-lapse microscopy and microsurgical interventions20,21. Despite its great success, New&#39;s technique is relatively demanding and time consuming. The blastoderm often detaches when the vitelline membrane, carrying the blastoderm, is stretched around a glass ring to achieve the proper tension1. Moreover, the embryo can only be cultured with its ventral side up. The EC (Early Chick) culture, a more recent technique developed by Chapman and Collignon1, circumvents the stretching of the vitelline membrane by using a filter paper carrier with a central aperture. The filter paper attaches to the vitelline membrane, thereby maintaining its natural tension, and surrounds the embryo like a picture frame1. Embryos are then cultured on an agar-albumen bottom, usually with their ventral side up. Culturing dorsal side up seems only possible for embryos at HH815 and older. Many groups have adapted the filter paper carrier to their needs, such as by replacing the agar-albumen bottom with a support made from surgical suture fibers24 or a collagen coated membrane25. Often, embryos cultured with New&#39;s technique or with the EC culture are exposed, with their dorsal or ventral surface to air to facilitate oxygen diffusion1,20. These explant cultures have to be kept in a humidified atmosphere to avoid evaporation of the medium and to prevent the embryo from drying out. This is achieved by incubating the dish with the explant culture in a larger Petri dish containing moistened tissue paper1. The acquisition of time-lapse images of these embryos requires either the use of a climate-controlled incubator around the whole microscope or a temperature-controlled container with a heated lid to prevent condensation in the light path14. However, chick embryos can also develop ex ovo completely submerged in culture medium as filter paper cultures25, sandwiched between a layer of heavy mineral oil and albumen in adaptions of New&#39;s technique2,21, or as folded blastoderm explants in the &#34;Cornish Pasty Culture&#34;23,26, without direct contact with the air.
The submerged filter paper sandwich is a new variant of the filter paper carrier technique. By combining earlier knowledge on culturing chick embryos ex ovo, it makes the climate-controlled incubator and the heated lid dispensable. The embryo is sandwiched between two identical (laser-cut) filter paper carriers24 and cultured fully submerged in a simple culture medium (Pannett-Compton saline27,28 and thin albumen in a 3:2 ratio) in a temperature controlled container. A layer of light mineral oil floating on top of the medium prevents evaporation2,21 and minimizes heat loss to the environment. The bottom of the container has a glass window, and the whole setup is performed on an upright long working distance zoom microscope. This setup allows the acquisition of high-resolution brightfield and darkfield time-lapse movies of about 30 hr of embryonic development, ranging from the early primitive streak stage to the 28-somite stage (equivalent to Hamburger Hamilton stages 5 to 16, HH5-16)15. Embryos can be cultured equally well with their ventral or dorsal side up. Therefore, embryos are accessible to observation and manipulation of ventral (e.g., early heart7,8 and somitogenesis6) and dorsal (e.g., late gastrulation2, neural tube closure3-5, and early brain9-13) development. The submerged filter paper sandwich provides a simple and stable environment for microsurgery, bead implantation, microinjection, gene silencing, and electroporation studies. Its imaging potential can be pushed much further by using laser-based imaging (including light-sheet microscopy) and immersion objectives.

<table border="1" fo:keep-together.within-page="1" fo:keep-with-next.within-page="always">
	<tbody>
		<tr>
			<td>Milli-Q&#160;Reference Water Purification System</td>
			<td>Millipore</td>
			<td>Z00QSV0WW&#160;</td>
			<td></td>
		</tr>
		<tr>
			<td>Duran&#160;laboratory bottles, with caps, 1L</td>
			<td>Sigma-Aldrich/Duran</td>
			<td>Z305200-10EA&#160;</td>
			<td></td>
		</tr>
		<tr>
			<td>Name</td>
			<td>Company</td>
			<td>Catalog Number</td>
			<td>Comments</td>
		</tr>
		<tr>
			<td>Solution A</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>NaCl</td>
			<td>Merck Millipore</td>
			<td>1064041000</td>
			<td></td>
		</tr>
		<tr>
			<td>KCl</td>
			<td>Merck Millipore</td>
			<td>1049361000</td>
			<td></td>
		</tr>
		<tr>
			<td>CaCl2 H2O</td>
			<td>Merck Millipore</td>
			<td>1023821000</td>
			<td></td>
		</tr>
		<tr>
			<td>MgCl2.6H2O</td>
			<td>Merck/Sigma-Aldrich</td>
			<td>13152-1KG-D&#160;</td>
			<td></td>
		</tr>
		<tr>
			<td>Name</td>
			<td>Company</td>
			<td>Catalog Number</td>
			<td>Comments</td>
		</tr>
		<tr>
			<td>Solution B</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Na2HPO4.2H2O</td>
			<td>Merck</td>
			<td>1065801000</td>
			<td></td>
		</tr>
		<tr>
			<td>NaH2PO4.2H2O</td>
			<td>Merck</td>
			<td>1063420250</td>
			<td></td>
		</tr>
		<tr>
			<td>Name</td>
			<td>Company</td>
			<td>Catalog Number</td>
			<td>Comments</td>
		</tr>
		<tr>
			<td>Whatman&#160;qualitative filter paper, Grade 595</td>
			<td>Sigma-Aldrich</td>
			<td>10311611</td>
			<td></td>
		</tr>
		<tr>
			<td>Laser cutting machine MLS-90120-C130, CO2-laser, 130W, wavelength 10.6 &#181;m</td>
			<td>Micro Lasersystems</td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Tork Extra Soft Facial Tissues</td>
			<td>Tork</td>
			<td>140280</td>
			<td></td>
		</tr>
		<tr>
			<td>Latex gloves</td>
			<td>Sigma-Aldrich</td>
			<td>Z645613</td>
			<td></td>
		</tr>
		<tr>
			<td></td>
			<td>EMDAMED</td>
			<td>EMDA 300.131</td>
			<td></td>
		</tr>
		<tr>
			<td>Transfer pipettes</td>
			<td>Sigma-Aldrich</td>
			<td>Z350613</td>
			<td></td>
		</tr>
		<tr>
			<td></td>
			<td>VWR</td>
			<td>WITG5.480.003</td>
			<td></td>
		</tr>
		<tr>
			<td>accu-jet pro Pipette Controller</td>
			<td>BrandTech Scientific</td>
			<td>26332</td>
			<td></td>
		</tr>
		<tr>
			<td>Serological plastic pipettes, 25mL</td>
			<td>Sigma-Aldrich</td>
			<td>CLS4251</td>
			<td></td>
		</tr>
		<tr>
			<td>Plastic document sleeves</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Egg incubator - Incubator mod. Cip Cip 40</td>
			<td>Fiem</td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Fertilized chicken eggs (Gallus gallus)</td>
			<td>Drost BV (Loosdrecht, NL)</td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>10 cm Tissue culture dishes</td>
			<td>Sigma-Aldrich</td>
			<td>P5731</td>
			<td></td>
		</tr>
		<tr>
			<td></td>
			<td>Greiner Bio-one</td>
			<td>664160</td>
			<td></td>
		</tr>
		<tr>
			<td>6 cm Petri dishes</td>
			<td>Sigma-Aldrich</td>
			<td>P5481</td>
			<td></td>
		</tr>
		<tr>
			<td>50ml Centrifuge tubes , Greiner centrifuge tubes&#160; or Cellstar tubes</td>
			<td>Sigma-Aldrich</td>
			<td>T2318</td>
			<td></td>
		</tr>
		<tr>
			<td></td>
			<td>greiner bio-one</td>
			<td>227261</td>
			<td></td>
		</tr>
		<tr>
			<td>Name</td>
			<td>Company</td>
			<td>Catalog Number</td>
			<td>Comments</td>
		</tr>
		<tr>
			<td>Stainless steel rings, custom-made</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Large rings, 30 mm outer diameter, 4 mm in height, 1.5 mm wall thickness</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Small rings, 20 mm outer diameter, 4 mm in height, 1.5 mm wall thickness, 6.5 mm gap in the ring</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Nail scissors</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Forceps, Dumont #5, Inox</td>
			<td>Fine Science Tools , F.S.T.</td>
			<td>11251-20</td>
			<td></td>
		</tr>
		<tr>
			<td>Fine, really sharp scissors for cutting filter paper</td>
			<td>VWR</td>
			<td>21-102</td>
			<td></td>
		</tr>
		<tr>
			<td>M3516&#160;Sigma-Aldrich Mineral Oil</td>
			<td>Sigma-Aldrich</td>
			<td>CAS Number&#160;8042-47-5</td>
			<td></td>
		</tr>
		<tr>
			<td>Name</td>
			<td>Company</td>
			<td>Catalog Number</td>
			<td>Comments</td>
		</tr>
		<tr>
			<td>Agar bottoms for EC culture</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Agarose</td>
			<td>Sigma-Aldrich</td>
			<td>A9539&#160;SIGMA</td>
			<td></td>
		</tr>
		<tr>
			<td>NaCl</td>
			<td>Sigma-Aldrich</td>
			<td>S7653&#160;SIGMA-ALDRICH</td>
			<td></td>
		</tr>
		<tr>
			<td>Name</td>
			<td>Company</td>
			<td>Catalog Number</td>
			<td>Comments</td>
		</tr>
		<tr>
			<td>Microbead implantation</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Polybead Sampler Kit III (45 &#181;m beads were used)</td>
			<td>Polysciences, Inc.</td>
			<td>16905-1</td>
			<td></td>
		</tr>
		<tr>
			<td>Accupuncture needles: type J, No.02, 0.12x30mm</td>
			<td>SEIRIN</td>
			<td>&#160;type J, No.02, 0.12x30mm</td>
			<td></td>
		</tr>
		<tr>
			<td>PBS, pH 7.4</td>
			<td>Thermo Fisher Scientific</td>
			<td>10010023&#160;</td>
			<td></td>
		</tr>
		<tr>
			<td>Name</td>
			<td>Company</td>
			<td>Catalog Number</td>
			<td>Comments</td>
		</tr>
		<tr>
			<td>Temperature controlled beaker</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>RTD Temperature Sensor with M4 Threaded Housing RTD-850M</td>
			<td>Omega</td>
			<td>RTD-850M</td>
			<td></td>
		</tr>
		<tr>
			<td>Hermetically Sealed RTD Sensors HSRTD-3-100-A-3M</td>
			<td>Omega</td>
			<td>HSRTD-3-100-A-1M</td>
			<td></td>
		</tr>
		<tr>
			<td>Thermistor and RTD Extension Wire EXTT-3CU-26S-50</td>
			<td>Omega</td>
			<td>EXTT-3CU-26S-50</td>
			<td></td>
		</tr>
		<tr>
			<td>3-Pin Mini Connectors for Thermocouples, 3-Wire RTD&#39;s and Thermistors MTP-U-M</td>
			<td>Omega</td>
			<td>MTP-U-M</td>
			<td></td>
		</tr>
		<tr>
			<td>Kapton (Polyimide Film) Insulated Flexible Heaters KHLV-103/(10)-P</td>
			<td>Omega</td>
			<td>KHLV-103/(10)-P</td>
			<td></td>
		</tr>
		<tr>
			<td>Temperature/Process Controller CNi16D24-C4EIT-DC</td>
			<td>Omega</td>
			<td>CNi16D24-C4EIT-DC</td>
			<td></td>
		</tr>
		<tr>
			<td>Custom-made aluminium beaker, isolated with polyacetal (drawings see sheet 2)</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Name</td>
			<td>Company</td>
			<td>Catalog Number</td>
			<td>Comments</td>
		</tr>
		<tr>
			<td>Microscope setup</td>
			<td></td>
			<td></td>
			<td></td>
		</tr>
		<tr>
			<td>Axio Zoom.V16 with ApoTome.2 ZEN</td>
			<td>Carl Zeiss AG</td>
			<td>495010-0009-000</td>
			<td></td>
		</tr>
		<tr>
			<td>Objective PlanNeoFluar Z 1.0x/0.25 FWD 56mm</td>
			<td>Carl Zeiss AG</td>
			<td>435281-9100-000</td>
			<td></td>
		</tr>
		<tr>
			<td>Manual Rotary Control MARC</td>
			<td>Carl Zeiss AG</td>
			<td>435604-0000-000</td>
			<td></td>
		</tr>
		<tr>
			<td>Transillumination top 450 mot</td>
			<td>Carl Zeiss AG</td>
			<td>435500-9000-000</td>
			<td></td>
		</tr>
		<tr>
			<td>Motorized measuring stage S 150x100 mot; CAN (D)</td>
			<td>Carl Zeiss AG</td>
			<td>435465-9020-000</td>
			<td></td>
		</tr>
		<tr>
			<td>Insert plate S, glass 237x157x3mm (D)</td>
			<td>Carl Zeiss AG</td>
			<td>435465-9053-000</td>
			<td></td>
		</tr>
		<tr>
			<td>Controller EMS 3</td>
			<td>Carl Zeiss AG</td>
			<td>435610-9010-000</td>
			<td></td>
		</tr>
		<tr>
			<td>System Control Panel SYCOP 3</td>
			<td>Carl Zeiss AG</td>
			<td>435611-9010-000</td>
			<td></td>
		</tr>
		<tr>
			<td>Hamamatsu ORCA Flash 4.0 camera</td>
			<td>Hamamatsu</td>
			<td>C11440-22CU</td>
			<td></td>
		</tr>
		<tr>
			<td>Microscopy High-End Workstation Xeon Quad-Core mulitlingual</td>
			<td>Carl Zeiss AG</td>
			<td>490004-0025-000</td>
			<td></td>
		</tr>
		<tr>
			<td>Language Package Windows 7 x64 Ultimate English US</td>
			<td>Carl Zeiss AG</td>
			<td>410373-0200-000</td>
			<td></td>
		</tr>
		<tr>
			<td>LCD TFT Monitor HP ZR2440w 24&#34;</td>
			<td>Carl Zeiss AG</td>
			<td>410350-2403-000</td>
			<td>not available anymore</td>
		</tr>
		<tr>
			<td>ZEN pro 2012 Hardware License key</td>
			<td>Carl Zeiss AG</td>
			<td>410135-1002-120</td>
			<td>not available anymore</td>
		</tr>
		<tr>
			<td>ZEN Software Driver Hamamatsu Cameras Hardware License Key</td>
			<td>Carl Zeiss AG</td>
			<td>410136-1045-110</td>
			<td></td>
		</tr>
		<tr>
			<td>ZEN module Z Stack</td>
			<td>Carl Zeiss AG</td>
			<td>410136-0030-110</td>
			<td></td>
		</tr>
		<tr>
			<td>ZEN Module Tiles/ Positions</td>
			<td>Carl Zeiss AG</td>
			<td>410136-1025-110</td>
			<td></td>
		</tr>
		<tr>
			<td>ZEN Module Time Lapse</td>
			<td>Carl Zeiss AG</td>
			<td>410136-1031-110</td>
			<td></td>
		</tr>
		<tr>
			<td>ZEN Module Experiment Designer</td>
			<td>Carl Zeiss AG</td>
			<td>410136-1022-110</td>
			<td></td>
		</tr>
		<tr>
			<td>ZEN Desk 2012 Hardware License Key</td>
			<td>Carl Zeiss AG</td>
			<td>410135-1004-120</td>
			<td>not available anymore</td>
		</tr>
	</tbody>
</table>

a submerged filter paper sandwich for long-term ex ovo time-lapse imaging of early chick embryos

Due to its availability, low cost, flat geometry, and transparency, the ex ovo chick embryo has become a major vertebrate animal model for the study of morphogenetic events, such as gastrulation2, neurulation3-5, somitogenesis6, heart bending7,8, and brain formation9-13, during early embryogenesis. Key to understanding morphogenetic processes is to follow them dynamically by time-lapse imaging. The acquisition of time-lapse movies of chick embryogenesis ex ovo has been limited either to short time windows or to the need for an incubator to control temperature and humidity around the embryo14. Here, we present a new technique to culture chick embryos ex ovo for high-resolution time-lapse imaging using transmitted light microscopy. The submerged filter paper sandwich is a variant of the well-established filter paper carrier technique (EC-culture)1 and allows for the culturing of chick embryos without the need for a climate chamber. The embryo is sandwiched between two identical filter paper carriers and is kept fully submerged in a simple, temperature-controlled medium covered by a layer of light mineral oil. Starting from the primitive streak stage (Hamburger-Hamilton stage 5, HH5)15 up to at least the 28-somite stage (HH16)15, embryos can be cultured with either their ventral or dorsal side up. This allows the acquisition of time-lapse movies covering about 30 hr of embryonic development. Representative time-lapse frames and movies are shown. Embryos are compared morphologically to an embryo cultured in the standard EC-culture.
The submerged filter paper sandwich provides a stable environment to study early dorsal and ventral morphogenetic processes. It also allows for live fluorescence imaging and micromanipulations, such as microsurgery, bead implantation, microinjection, gene silencing, and electroporation, and has a strong potential to be combined with immersion objectives for laser-based imaging (including light-sheet microscopy).

<img alt="Figure 2" src="/files/ftp_upload/54636/54636fig2.jpg" /> 
Figure 2: Morphological Comparison between Embryos in EC Culture1 and in Submerged Filter Paper Sandwich Culture. Selected time-lapse frames show the embryos at 3 hr intervals. Frames are resized to give an overview of full embryo morphology. Embryos were age-matched to the 7-somite stage (HH9)15. 0 hr indicates the start of each experiment. Anterior is always to the left. Images were acquired using darkfield illumination. (A) Embryo in EC culture1, cultured ventral side up on an agar-albumen bottom1,33. High-quality images can be acquired, as the embryo is confined in the z-direction. (B and C) Two embryos cultured in the submerged filter paper sandwich: (B) Ventral side up and (C) dorsal side up. Embryos in the filter paper sandwich develop without qualitative differences for at least 27 hr. They develop functional blood circulation and cranial and cervical flexure and turn successfully. <a href="http://cloudflare.jove.com/files/ftp_upload/54636/54636fig2large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
Time-lapse acquisition depends on the microscope system available. In this study, a long working distance, upright zoom microscope was used. The zoom factor was set to 5X. In combination with the 16X magnification of the eyepiece, this resulted in 80X total magnification, with a theoretical resolution of 1.3 &#181;m/pixel (as stated in the microscope software)30. To increase the field-of-view, embryos were imaged as horizontal panoramas of five sub-images (tiles). Therefore, a tile region, consisting of five overlapping tiles, was defined29. This tile region was positioned so as to fully cover the elliptical aperture of the filter paper carrier in its horizontal extension (Figure 2B - 0 hr). Each tile had a size of 2,048 x 2,048 pixels, covering a field-of-view of approximately 2.7 mm, and tiles were acquired with an overlap of 10%, resulting in total field-of-view of approximately 12 mm x 2.7 mm for the panorama. The motorized x-y-stage moved relative to the objective with a speed of approximately 1.75 mm/sec between acquisition of the separate tiles29. The live image was focused on the anterior presomitic mesoderm and the most recently-formed somites (the research focus of our group). To compensate for the thickening and curling of the embryos in the z-direction, small z-stacks (five to seven different planes with a distance of 30 &#181;m) were acquired at every time point30. These were selected around the focal plane of the anterior tip of the presomitic mesoderm. The duration of the time-lapse acquisition was set to 50 hr, and imaging intervals of 3, 4, or 10 min were chosen31. The quality of the time-lapse acquisition could be improved by refocusing every 5 - 10 hr and redefining the z-stack around the new optimal focal plane. At the end of the experiment, the whole time-series was edited manually, and subsets of images containing the z-plane with the best focus were created and saved to a separate folder32. These subsets of images were time-stitched to create a complete time-series of images with optimal focus. The tiles of each image of this complete time-series were stitched and fused together without shading correction30, and time-lapse frames were exported as JPEG-images of 100% size and 95% compression32. The time-lapse frames were imported as an image sequence into professional video-editing software. The detailed 100% zooms were stabilized, and the overall contrast was adjusted to our liking. The final time-lapses were encoded with the H.264 codec and exported in MPEG-4 containers. Movies are displayed at a frame rate of 15 frames/sec (fps) and a resolution of 1,920 x 1,080 pixels.
Figure 2 shows a comparison between an embryo in EC culture1 (Figure 2A) and two embryos in the submerged filter paper sandwich culture, one being cultured ventral side up (Figure 2B) and the other one dorsal side up (Figure 2C). All embryos were age-matched to the seven somite stage (HH9)15 and imaged with a temporal resolution of 4 min (Figure 2A and B) or 10 min (Figure 2C). Selected frames of 3 hr intervals are depicted. The EC culture (Figure 2A) allowed very stable imaging due to the embryo resting on&#160;a stable agar-albumen bottom1,33. The entire embryo remained in one focal plane throughout the whole time-lapse. This could be beneficial for shorter experiments (several hours) and very early embryos, but it comes with a strong confinement of the embryo in the z-direction, possibly hindering its successful three-dimensional development in the long term. In the beginning, the confinement only resulted in a slight lateral flattening of the embryo&#39;s head compared to an embryo cultured in the submerged filter paper sandwich with its ventral side up (compare Figure 2A and 2B at 0 hr). Later, the turning of the head was impaired (Figure 2A - 21 hr) and the heart beat slowed down. Blood circulation almost stopped. See Supplemental Movie 1 for the complete time-lapse of the embryo in EC culture. The upper panel in this movie shows a full overview of the embryo, while the panel on the lower left visualizes the heart development in full resolution. The segmentation of the presomitic mesoderm into somites can be seen in detail on the lower right.
Embryos in the submerged filter paper sandwich, on the other hand, were limited in their three-dimensional expansion only by the natural tension of the membranes surrounding them. They could be cultured either with their ventral (Figure 2B) or dorsal side up (Figure 2C). Either way, the embryos showed continuous somitogenesis, and their heads turned. They developed cranial and cervical flexure and functional blood circulation. Both embryos in the filter paper sandwich were imaged with the focus on the segmenting mesoderm, so that parts of the head gradually moved out of focus as the embryos grew, thickened, and started to turn, while the segmenting part of the mesoderm remained in focus (compare Figure 2B and 2C at 21 hr to 27 hr). Supplemental Movie 2 shows the complete time-lapse movie of the embryo depicted in Figure 2B. The imaging interval was 4 min. The top panel of this movie shows a full overview of the embryo. The development of the embryo was imaged consecutively over 46 hr, but after approximately 30 hr, the focus on the segmenting mesoderm got lost due to the overall thickening and turning of the embryonic tissue. The lower left panel shows the early development of the heart in full resolution from the acquired time-lapse frames. Through fusion of the paired cardiac primordia on both sides of the midline, a nearly straight tubular structure is formed, which later starts beating and bending to the right. The lower right panel shows the most recently-formed somites and the anterior tip of the presomitic mesoderm in full resolution and tracks the formation of new somites over time. Supplemental Movie 3 shows another embryo cultured and imaged ventral side up in the submerged filter paper sandwich. The imaging interval was 4 min. The movie covers the development of the embryo from stage HH5-6 to approximately stage HH1415, over roughly 27 hr of culture time. The head fold forms and progresses posteriorly. The heart forms from its bilateral primordia, starts beating, and bends to the right. The first three to four somites form simultaneously. Additional somites bud off sequentially from the anterior tip of the presomitic mesoderm. The lower panel shows the head region of the embryo in full resolution, allowing the observation of the head fold and early heart formation in high detail. Due to the transparency of the embryo, the closure of the neural tube can be observed in the future head region. Supplemental Movie 4 displays somite formation in the same embryo in full resolution over the full imaging time in the lower panel. Supplemental Movie 5 shows the complete time-lapse of the embryo cultured dorsal side up (Figure 2C). The imaging interval was 10 min. While the upper panel shows the development of the embryo from the seven somite stage (HH9) to approximately stage HH16-17, the lower panel is cropped to display the morphological changes in the early brain at that stage in full resolution. The local swelling of the neural tube can be observed, leading to the regionalization of the forebrain, midbrain, and hindbrain, which will divide into the five subregions of the embryonic brain at later stages13. In addition, the growth of the optic vesicles can be seen clearly. After approximately 30 hr in culture, the embryo is dying.
To show the compatibility of the submerged filter paper sandwich with microsurgical manipulations, several polystyrene microbeads (~ 40 &#181;m in diameter) were implanted into or in the vicinity of the presomitic mesoderm of a chicken embryo in the submerged filter paper sandwich culture. The microbeads were washed in PBS to remove storage buffer and implanted prior to covering the culture medium with the layer of light mineral oil (compare to step 2.18 of the protocol section). A glass Pasteur pipette was used to transfer the beads to the embryo surface, under observation through the eyepieces of the microscope. Five holes were created in the endoderm by gently scraping it with an acupuncture needle. A custom-made J-shaped tool, created by stretching and bending a glass Pasteur pipette in a flame, was used to manipulate the beads and push them carefully into the holes until they became immobile. Three holes were filled with one bead each (Figure 3A - 0 hr and 3B*) and two holes with two beads each (Figure 3A - 0 hr). Figure 3A shows, in selected time-lapse frames, the development of the chick embryo after the microsurgical implantation of the beads. Three beads were successfully incorporated into the tissue at the desired location, and their movement was imaged over the course of the experiment in high detail (Figure 3B). The development of the embryo did not seem to be impaired by the manipulation or the presence of the beads. See Supplemental Movie 6 for the full time-lapse movie. The imaging interval was 4 min.
<img alt="Figure 3" src="/files/ftp_upload/54636/54636fig3.jpg" /> 
Figure 3: Time-lapse Imaging after Microbead Implantation. Proof-of-principle experiment showing the compatibility of the submerged filter paper sandwich with microbead implantation. The head of the embryo is to the left, but it was not imaged during this experiment. Images were acquired using darkfield illumination. (A) Selected time-lapse frames showing the manipulated embryo at 3 hr intervals after the implantation of seven microbeads (~ 40 &#181;m in diameter). The embryo elongated and continuously formed additional somites. Three beads seem to have been properly attached and moved medially with the tissue flow over 18 hr of culture. The other four beads popped out of their holes between 6 and 9 hr of culture and drifted posteriorly. (B) Detailed view of the three single beads (B1 to B3) implanted into the presomitic mesoderm at beginning of the experiment (0 hr, B*) and after 12 hr of incubation (B**). The number of the just-forming somites is indicated (S9 in B* and S18 in B**). <a href="http://cloudflare.jove.com/files/ftp_upload/54636/54636fig3large.jpg" target="_blank">Please click here to view a larger version of this figure.</a>
<img alt="Movie 1" src="/files/ftp_upload/54636/54636movie1.jpg" /> 
Supplemental Movie 1: EC-culture Ventral Side Up. Embryo in EC culture1, cultured ventral side up, from the seven somite stage (HH9)15 onwards on an agar-albumen bottom1,33. The imaging interval was 4 min. The relative time is displayed in the upper-left corner. High-quality images could be acquired, as the embryo was confined in the z-direction. After 21 hr, the heartbeat and blood flow were almost arrested and the embryo had started to disintegrate. The upper panel shows a resized overview of the embryo, while the lower panels visualize heart development (left panel) and segmentation of the presomitic mesoderm (right panel) in full resolution (100% zoom). <a href="https://www.jove.com/files/ftp_upload/54636/Movie_1_EC_culture-Ventral_up.mp4" target="_blank">(Right click to download).</a>
<img alt="Movie 2" src="/files/ftp_upload/54636/54636movie2.jpg" /> 
Supplemental Movie 2: Submerged Filter Paper Sandwich Ventral Side Up. Embryo cultured in the submerged paper sandwich from the seven somite stage (HH9)15 onwards, ventral side facing up. The imaging interval was 4 min. The relative time is displayed in the upper-left corner in hr and min, restarting after 24 hr. The upper panel shows a resized overview of the development of the embryo over 46 hr, consecutively. The lower left panel visualizes early heart development during the first 10 hr of image acquisition in full resolution (100% zoom). The lower right panel depicts segmenting mesoderm over approximately 30 hr of development in full resolution (100% zoom) until focus is lost due to overall thickening and turning of embryonic tissue. <a href="https://www.jove.com/files/ftp_upload/54636/Movie_2_Sandwich-Ventral_up.mp4" target="_blank">(Right click to download).</a>
<img alt="Movie 3" src="/files/ftp_upload/54636/54636movie3.jpg" /> 
Supplemental Movie 3: Head Fold Formation. Embryo cultured ventral side up in the submerged filter paper sandwich from the head-process/head-fold stage (HH5-6)15 to approximately the 22-somite stage (HH14)15 over roughly 27 hr of culture time. The imaging interval was 4 min. The relative time is displayed in the upper-left corner in h and min, restarting after 24 hr. The upper panel shows a resized overview of the development of the embryo. The lower panel depicts the head region of the embryo in full resolution (100% zoom). The formation of the head fold and early heart and the closure of the neural tube can be observed. <a href="https://www.jove.com/files/ftp_upload/54636/Movie_3_Sandwich-Ventral_up-Head.mp4" target="_blank">(Right click to download).</a>
<img alt="Movie 4" src="/files/ftp_upload/54636/54636movie4.jpg" /> 
Supplemental Movie 4: Somitogenesis. Embryo cultured ventral side up in the submerged filter paper sandwich from the head-process/head-fold stage (HH5-6)15 to approximately the 22-somite stage (HH14)15 over roughly 27 hr of culture time. The imaging interval was 4 min. The relative time is displayed in the upper-left corner in h and min, restarting after 24 hr. The upper panel shows a resized overview of the development of the embryo. The lower panel depicts the segmenting paraxial mesoderm in full resolution (100% zoom). <a href="https://www.jove.com/files/ftp_upload/54636/Movie_4_Sandwich-Ventral_up-Somitogenesis.mp4" target="_blank">(Right click to download).</a>
<img alt="Movie 5" src="/files/ftp_upload/54636/54636movie5.jpg" /> 
Supplemental Movie 5: Submerged Filter Paper Sandwich Dorsal Side Up. Embryo cultured dorsal side up in the submerged filter paper sandwich from the seven somite stage (HH9)15 to approximately the HH16-17 stage15. The imaging interval was 10 min. The relative time is displayed in the upper-left corner in hr and min, restarting after 24 hr. The upper panel shows a resized overview of the development of the embryo. The lower panel depicts morphological changes in the early brain in full resolution (100% zoom). The embryo died after approximately 30 hr in culture. <a href="https://www.jove.com/files/ftp_upload/54636/Movie_5_Sandwich-Dorsal_up-Head.mp4" target="_blank">(Right click to download).</a>
<img alt="Movie 6" src="/files/ftp_upload/54636/54636movie6.jpg" /> 
Supplemental Movie 6: Microbeads Implanted. Embryo cultured ventral side up in the submerged filter paper sandwich for approximately 19 hr, starting from the nine somite stage (HH9-10)15. The imaging interval was 4 min. The relative time is displayed in the upper-left corner in h and min. The upper panel shows a resized overview of the tail region with seven microbeads implanted into the presomitic mesoderm. The lower panel shows the region with implanted microbeads in full resolution (100% zoom). <a href="https://www.jove.com/files/ftp_upload/54636/Movie_6_Sandwich-Ventral_up-Microbeads.mp4" target="_blank">(Right click to download).</a>

Watch this Scientific Journal Video about A Submerged Filter Paper Sandwich for Long-term Ex Ovo Time-lapse Imaging of Early Chick Embryos at JoVE.com

A Submerged Filter Paper Sandwich for Long-term Ex Ovo Time-lapse Imaging of Early Chick Embryos

Here, we present a new technique to culture chick embryos ex ovo for time-lapse imaging using transmitted light and fluorescence microscopy. The submerged filter paper sandwich is a variant of the well-established filter paper carrier technique1 that allows for the culturing of chick embryos fully-submerged in a liquid culture medium.

A Submerged Filter Paper Sandwich for Long-term Ex Ovo Time-lapse Imaging of Early Chick Embryos

Due to its availability, low cost, flat geometry, and transparency, the ex ovo chick embryo has become a major vertebrate animal model for the study of ...

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Video: A Submerged Filter Paper Sandwich for Long-term Ex Ovo Time-lapse Imaging of Early Chick Embryos

Efficient Gene Transfer in Chick Retinas for Primary Cell Culture Studies: An Ex-ovo Electroporation Approach

The cone photoreceptor-enriched cultures derived from embryonic chick retinas have become an indispensable tool for researchers around the world studying the biology of retinal neurons, particularly photoreceptors. The applications of this system go beyond basic research, as they can easily be adapted to high throughput technologies for drug development. However, genetic manipulation of retinal photoreceptors in these cultures has proven to be very challenging, posing an important limitation to the usefulness of the system. We have recently developed and validated an ex&#160;ovo plasmid electroporation technique that increases the rate of transfection of retinal cells in these cultures by five-fold compared to other currently available protocols1. In this method embryonic chick eyes are enucleated at stage 27, the RPE is removed, and the retinal cup is placed in a plasmid-containing solution and electroporated using easily constructed custom-made electrodes. The retinas are then dissociated and cultured using standard procedures. This technique can be applied to overexpression studies as well as to the downregulation of gene expression, for example via the use of plasmid-driven RNAi technology, commonly achieving transgene expression in 25% of the photoreceptor population. The video format of the present publication will make this technology easily accessible to researchers in the field, enabling the study of gene function in primary retinal cultures. We have also included detailed explanations of the critical steps of this procedure for a successful outcome and reproducibility.

Efficient Gene Transfer in Chick Retinas for Primary Cell Culture Studies: An Ex-ovo Electroporation Approach

Embryonic chick retinal cell cultures constitute valuable tools for the study of photoreceptor biology. We have developed an efficient gene transfer technique based on ex&#160;ovo plasmid electroporation of the retinas prior to culture. This technique considerably increases transfection efficiencies over currently available protocols, making genetic manipulation feasible for this system.

The cone photoreceptor-enriched cultures derived from embryonic chick retinas have become an indispensable tool for researchers around the world studying ...

Optimized Ex-ovo Culturing of Chick Embryos to Advanced Stages of Development

Research in anatomy, embryology, and developmental biology has largely relied on the use of model organisms. In order to study development in live embryos model organisms, such as the chicken, are often used. The chicken is an excellent model organism due to its low cost and minimal maintenance, however they present observational challenges because they are enclosed in an opaque eggshell. In order to properly view the embryo as it develops, the shell must be windowed or removed. Both windowing and ex ovo techniques have been developed to assist researchers in the study of embryonic development. However, each of the methods has limitations and challenges. Here, we present a simple, optimized ex ovo culture technique for chicken embryos that enables the observation of embryonic development from stage HH 19 into late stages of development (HH 40), when many organs have developed. This technique is easy to adopt in both undergraduate classes and more advanced research laboratories where embryo manipulations are conducted.

Optimized Ex-ovo Culturing of Chick Embryos to Advanced Stages of Development

Viewing and accessing the chicken embryo during development can be challenging. We have developed an ex ovo method that is simple, cost effective, and can easily be used in a classroom or research setting. This method provides access to the embryo into late stages of embryonic development (HH 40).

Research in anatomy, embryology, and developmental biology has largely relied on the use of model organisms. In order to study development in live embryos ...

Analyzing In Vivo Cell Migration using Cell Transplantations and Time-lapse Imaging in Zebrafish Embryos

Cell migration is key to many physiological and pathological conditions, including cancer metastasis. The cellular and molecular bases of cell migration have been thoroughly analyzed in vitro. However, in vivo cell migration somehow differs from in vitro migration, and has proven more difficult to analyze, being less accessible to direct observation and manipulation. This protocol uses the migration of the prospective prechordal plate in the early zebrafish embryo as a model system to study the function of candidate genes in cell migration. Prechordal plate progenitors form a group of cells which, during gastrulation, undergoes a directed migration from the embryonic organizer to the animal pole of the embryo. The proposed protocol uses cell transplantation to create mosaic embryos. This offers the combined advantages of labeling isolated cells, which is key to good imaging, and of limiting gain/loss of function effects to the observed cells, hence ensuring cell-autonomous effects. We describe here how we assessed the function of the TORC2 component Sin1 in cell migration, but the protocol can be used to analyze the function of any candidate gene in controlling cell migration in vivo.

Analyzing In Vivo Cell Migration using Cell Transplantations and Time-lapse Imaging in Zebrafish Embryos

Combining cell transplantation, cytoskeletal labeling and loss/gain of function approaches, this protocol describes how the migrating zebrafish prospective prechordal plate can be used to analyze the function of a candidate gene in in vivo cell migration.

Cell migration is key to many physiological and pathological conditions, including cancer metastasis. The cellular and molecular bases of cell migration ...

An Ex Vivo Method for Time-Lapse Imaging of Cultured Rat Mesenteric Microvascular Networks

Angiogenesis, defined as the growth of new blood vessels from pre-existing vessels, involves endothelial cells, pericytes, smooth muscle cells, immune cells, and the coordination with lymphatic vessels and nerves. The multi-cell, multi-system interactions necessitate the investigation of angiogenesis in a physiologically relevant environment. Thus, while the use of in vitro cell-culture models have provided mechanistic insights, a common critique is that they do not recapitulate the complexity associated with a microvascular network. The objective of this protocol is to demonstrate the ability to make time-lapse comparisons of intact microvascular networks before and after angiogenesis stimulation in cultured rat mesentery tissues. Cultured tissues contain microvascular networks that maintain their hierarchy. Immunohistochemical labeling confirms the presence of endothelial cells, smooth muscle cells, pericytes, blood vessels and lymphatic vessels. In addition, labeling tissues with BSI-lectin enables time-lapse comparison of local network regions before and after serum or growth factor stimulation characterized by increased capillary sprouting and vessel density. In comparison to common cell culture models, this method provides a tool for endothelial cell lineage studies and tissue specific angiogenic drug evaluation in physiologically relevant microvascular networks.

An Ex Vivo Method for Time-Lapse Imaging of Cultured Rat Mesenteric Microvascular Networks

Angiogenesis involves multi-cell, multi-system interactions that need to be investigated in a physiologically relevant environment. The objective of this study is to demonstrate the ability of the rat mesentery culture model to make time-lapse comparisons of intact microvascular networks during angiogenesis.

Angiogenesis, defined as the growth of new blood vessels from pre-existing vessels, involves endothelial cells, pericytes, smooth muscle cells, immune ...

A Versatile Mounting Method for Long Term Imaging of Zebrafish Development

Zebrafish embryos offer an ideal experimental system to study complex morphogenetic processes due to their ease of accessibility and optical transparency. In particular, posterior body elongation is an essential process in embryonic development by which multiple tissue deformations act together to direct the formation of a large part of the body axis. In order to observe this process by long-term time-lapse imaging it is necessary to utilize a mounting technique that allows sufficient support to maintain samples in the correct orientation during transfer to the microscope and acquisition. In addition, the mounting must also provide sufficient freedom of movement for the outgrowth of the posterior body region without affecting its normal development. Finally, there must be a certain degree in versatility of the mounting method to allow imaging on diverse imaging set-ups. Here, we present a mounting technique for imaging the development of posterior body elongation in the zebrafish D. rerio. This technique involves mounting embryos such that the head and yolk sac regions are almost entirely included in agarose, while leaving out the posterior body region to elongate and develop normally. We will show how this can be adapted for upright, inverted and vertical light-sheet microscopy set-ups. While this protocol focuses on mounting embryos for imaging for the posterior body, it could easily be adapted for the live imaging of multiple aspects of zebrafish development.

Here, we present a versatile mounting method that allows for the long-term time-lapse imaging of the posterior body development of live zebrafish embryos without perturbing normal development.

Zebrafish embryos offer an ideal experimental system to study complex morphogenetic processes due to their ease of accessibility and optical transparency. ...

A Simple Chamber for Long-term Confocal Imaging of Root and Hypocotyl Development

Several aspects of plant development, such as lateral root morphogenesis, occur on time spans of several days. To study underlying cellular and subcellular processes, high resolution time-lapse microscopy strategies that preserve physiological conditions are required. Plant tissues must have adequate nutrient and water supply with sustained gaseous exchange but, when submerged and immobilized under a coverslip, they are particularly susceptible to anoxia. One strategy that has been successfully employed is the use of a perfusion system to maintain a constant supply of oxygen and nutrients. However, such arrangements can be complicated, cumbersome, and require specialized equipment. Presented here is an alternative strategy for a simple imaging system using perfluorodecalin as an immersion medium. This system is easy to set up, requires minimal equipment, and is easily mounted on a microscope stage, allowing several imaging chambers to be set up and imaged in parallel. In this system, lateral root growth rates are indistinguishable from growth rates under standard conditions on agar plates for the first two days, and lateral root growth continues at reduced rates for at least another day. Plant tissues are supplied with nutrients via an agar slab that can be used also to administer a range of pharmacological compounds. The system was established to monitor lateral root development but is readily adaptable to image other plant organs such as hypocotyls and primary roots.

Presented here is a simple technique for high-resolution confocal time-lapse imaging of root and hypocotyl development for up to 3 days using high numerical-aperture objectives and perfluorodecalin as an immersion medium.

Several aspects of plant development, such as lateral root morphogenesis, occur on time spans of several days. To study underlying cellular and ...

Long-term Live Imaging of Drosophila Eye Disc

Live imaging provides the ability to continuously track dynamic cellular and developmental processes in real time. Drosophila larval imaginal discs have been used to study many biological processes, such as cell proliferation, differentiation, growth, migration, apoptosis, competition, cell-cell signaling, and compartmental boundary formation. However, methods for the long-term ex vivo culture and live imaging of the imaginal discs have not been satisfactory, despite many efforts. Recently, we developed a method for the long-term ex vivo culture and live imaging of imaginal discs for up to 18 h. In addition to using a high insulin concentration in the culture medium, a low-melting agarose was also used to embed the disc to prevent it from drifting during the imaging period. This report uses the eye-antennal discs as an example. Photoreceptor R3/4-specific m&#948;0.5-Ga4 expression was followed to demonstrate that photoreceptor differentiation and ommatidial rotation can be observed during a 10 h live imaging period. This is a detailed protocol describing this simple method.

Long-term Live Imaging of Drosophila Eye Disc

This protocol describes a detailed method for the long-term ex vivo culture and live imaging of a Drosophila imaginal disc. It demonstrates photoreceptor differentiation and ommatidial rotation within the 10 h period of live imaging of the eye disc. The protocol is simple and does not require expensive setup.

Live imaging provides the ability to continuously track dynamic cellular and developmental processes in real time. Drosophila larval imaginal discs have ...

Multi-Photon Time Lapse Imaging to Visualize Development in Real-time: Visualization of Migrating Neural Crest Cells in Zebrafish Embryos

Congenital eye and craniofacial anomalies reflect disruptions in the neural crest, a transient population of migratory stem cells that give rise to numerous cell types throughout the body. Understanding the biology of the neural crest has been limited, reflecting a lack of genetically tractable models that can be studied in vivo and in real-time. Zebrafish is a particularly important developmental model for studying migratory cell populations, such as the neural crest. To examine neural crest migration into the developing eye, a combination of the advanced optical techniques of laser scanning microscopy with long wavelength multi-photon fluorescence excitation was implemented to capture high-resolution, three-dimensional, real-time videos of the developing eye in transgenic zebrafish embryos, namely Tg(sox10:EGFP) and Tg(foxd3:GFP), as sox10 and foxd3 have been shown in numerous animal models to regulate early neural crest differentiation and likely represent markers for neural crest cells. Multi-photon time-lapse imaging was used to discern the behavior and migratory patterns of two neural crest cell populations contributing to early eye development. This protocol provides information for generating time-lapse videos during zebrafish neural crest migration, as an example, and can be further applied to visualize the early development of many structures in the zebrafish and other model organisms.

A combination of the advanced optical techniques of laser scanning microscopy with long wavelength multi-photon fluorescence excitation was implemented to capture high-resolution, three-dimensional, real-time imaging of neural crest migration in Tg(sox10:EGFP) and Tg(foxd3:GFP) zebrafish embryos.

Congenital eye and craniofacial anomalies reflect disruptions in the neural crest, a transient population of migratory stem cells that give rise to ...

A Layered Mounting Method for Extended Time-Lapse Confocal Microscopy of Whole Zebrafish Embryos

Dynamics of development can be followed by confocal time-lapse microscopy of live transgenic zebrafish embryos expressing fluorescence in specific tissues or cells. A difficulty with imaging whole embryo development is that zebrafish embryos grow substantially in length. When mounted as regularly done in 0.3-1% low melt agarose, the agarose imposes growth restriction, leading to distortions in the soft embryo body. Yet, to perform confocal time-lapse microscopy, the embryo must be immobilized. This article describes a layered mounting method for zebrafish embryos that restrict the motility of the embryos while allowing for the unrestricted growth. The mounting is performed in layers of agarose at different concentrations. To demonstrate the usability of this method, whole embryo vascular, neuronal and muscle development was imaged in transgenic fish for 55 consecutive hours. This mounting method can be used for easy, low-cost imaging of whole zebrafish embryos using inverted microscopes without requirements of molds or special equipment.

This article describes a method to mount fragile zebrafish embryos for extended time-lapse confocal microscopy. This low-cost method is easy to perform using regular glass-bottom microscopy dishes for imaging on any inverted microscope. The mounting is performed in layers of agarose at different concentrations.

Dynamics of development can be followed by confocal time-lapse microscopy of live transgenic zebrafish embryos expressing fluorescence in specific tissues ...

Visualizing the Developing Brain in Living Zebrafish using Brainbow and Time-lapse Confocal Imaging

Development of the vertebrate nervous system requires a precise coordination of complex cellular behaviors and interactions. The use of high resolution in vivo imaging techniques can provide a clear window into these processes in the living organism. For example, dividing cells and their progeny can be followed in real time as the nervous system forms. In recent years, technical advances in multicolor techniques have expanded the types of questions that can be investigated. The multicolor Brainbow approach can be used to not only distinguish among like cells, but also to color-code multiple different clones of related cells that each derive from one progenitor cell. This allows for a multiplex lineage analysis of many different clones and their behaviors simultaneously during development. Here we describe a technique for using time-lapse confocal microscopy to visualize large numbers of multicolor Brainbow-labeled cells over real time within the developing zebrafish nervous system. This is particularly useful for following cellular interactions among like cells, which are difficult to label differentially using traditional promoter-driven colors. Our approach can be used for tracking lineage relationships among multiple different clones simultaneously. The large datasets generated using this technique provide rich information that can be compared quantitatively across genetic or pharmacological manipulations. Ultimately the results generated can help to answer systematic questions about how the nervous system develops.

In vivo imaging is a powerful tool that can be used to investigate the cellular mechanisms underlying nervous system development. Here we describe a technique for using time-lapse confocal microscopy to visualize large numbers of multicolor Brainbow-labeled cells in real time within the developing zebrafish nervous system.

Development of the vertebrate nervous system requires a precise coordination of complex cellular behaviors and interactions. The use of high resolution in ...