Name: a paired bead and magnet array for molding microwells with variable concave geometries
Uploaded: 2018-01-28T13:00:00
Description: Watch this Scientific Journal Video about A Paired Bead and Magnet Array for Molding Microwells with Variable Concave Geometries at JoVE.com

This research was supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Science, ICT and Future Planning (NRF-2014R1A1A2057527 and NRF-2016R1D1A1B03934418).

1. Preparation of through-hole array aluminum plate and magnet array
<ol>
	<li>Prepare two 50 mm x 50 mm (or larger) aluminum plates. The thickness of each plate was 300 &#181;m that is half of the bead diameter.</li>
	<li>Form a 30 x 30 through-hole array on one of the aluminum plates by using a CNC rotary engraver with a &#934;550-&#181;m micro drill bit with 30 mm/s of plunge rate and 8000 RPM of spindle speed. The distance between each hole (center to center) was 1 mm (Figure 1a and <s...

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	<li>Fennema, E., Rivron, N., Rouwkema, J., van Blitterswijk, C., de Boer, J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Spheroid+culture+as+a+tool+for+creating+3D+complex+tissues.">Spheroid culture as a tool for creating 3D complex tissues.</a> Trends Biotechnol. 31 (2), 108-115 (2013).</li><li>Djordjevic, B., Lange, C. S. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Hybrid+spheroids+as+a+tool+for+prediction+of+radiosensitivity+in+tumor+therapy.">Hybrid spheroids as a tool for prediction of radiosensitivity in tumor therapy.</a> Indian J Exp Biol. 42 (5), 443-447 (2004).</li><li>Takezawa, T., Yamazaki, M., Mori, Y., Yonaha, T., Yoshizato, K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Morphological+and+immuno-cytochemical+characterization+of+a+hetero-spheroid+composed+of+fibroblasts+and+hepatocytes.">Morphological and immuno-cytochemical characterization of a hetero-spheroid composed of fibroblasts and hepatocytes.</a> J Cell Sci. 101 (3), 495-501 (1992).</li><li>Gottfried, E., Kunz-Schughart, L. A., Andreesen, R., Kreutz, M. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Brave+little+world:+spheroids+as+an+in+vitro+model+to+study+tumor-immune-cell+interactions.">Brave little world: spheroids as an in vitro model to study tumor-immune-cell interactions.</a> Cell Cycle. 5 (7), 691-695 (2006).</li><li>Zhang, X., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Development+of+an+in+vitro+multicellular+tumor+spheroid+model+using+microencapsulation+and+its+application+in+anticancer+drug+screening+and+testing.">Development of an in vitro multicellular tumor spheroid model using microencapsulation and its application in anticancer drug screening and testing.</a> Biotechnol Prog. 21 (4), 1289-1296 (2005).</li><li>Kim, B. C., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Microwell-mediated+micro+cartilage-like+tissue+formation+of+adipose-derived+stem+cell.">Microwell-mediated micro cartilage-like tissue formation of adipose-derived stem cell.</a> Macromol Res. 22 (3), 287-296 (2014).</li><li>Fatehullah, A., Tan, S. H., Barker, N. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Organoids+as+an+in+vitro+model+of+human+development+and+disease.">Organoids as an in vitro model of human development and disease.</a> Nature cell biology. 18 (3), 246-254 (2016).</li><li>Yuhas, J. M., Li, A. P., Martinez, A. O., Ladman, A. J. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=A+simplified+method+for+production+and+growth+of+multicellular+tumor+spheroids.">A simplified method for production and growth of multicellular tumor spheroids.</a> Cancer Res. 37 (10), 3639-3643 (1977).</li><li>Hamilton, G. A., Westmoreland, C., George, E. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Effects+of+medium+composition+on+the+morphology+and+function+of+rat+hepatocytes+cultured+as+spheroids+and+monolayers.">Effects of medium composition on the morphology and function of rat hepatocytes cultured as spheroids and monolayers.</a> In Vitro Cell Dev Biol-Animal. 37 (10), 656-667 (2001).</li><li>Nyberg, S. L., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Rapid,+large-scale+formation+of+porcine+hepatocyte+spheroids+in+a+novel+spheroid+reservoir+bioartificial+liver.">Rapid, large-scale formation of porcine hepatocyte spheroids in a novel spheroid reservoir bioartificial liver.</a> Liver Transplant. 11 (8), 901-910 (2005).</li><li>Lazar, A., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Extended+liver-specific+functions+of+porcine+hepatocyte+spheroids+entrapped+in+collagen+gel.">Extended liver-specific functions of porcine hepatocyte spheroids entrapped in collagen gel.</a> In Vitro Cell Dev Biol-Animal. 31 (5), 340-346 (1995).</li><li>Kelm, J. M., Timmins, N. E., Brown, C. J., Fussenegger, M., Nielsen, L. K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Method+for+generation+of+homogeneous+multicellular+tumor+spheroids+applicable+to+a+wide+variety+of+cell+types.">Method for generation of homogeneous multicellular tumor spheroids applicable to a wide variety of cell types.</a> Biotechnol Bioeng. 83 (2), 173-180 (2003).</li><li>Lin, R. Z., Chang, H. Y. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Recent+advances+in+three-dimensional+multicellular+spheroid+culture+for+biomedical+research.">Recent advances in three-dimensional multicellular spheroid culture for biomedical research.</a> Biotechnol J. 3 (9-10), 1172-1184 (2008).</li><li>Choi, Y. Y., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Controlled-size+embryoid+body+formation+in+concave+microwell+arrays.">Controlled-size embryoid body formation in concave microwell arrays.</a> Biomaterials. 31 (15), 4296-4303 (2010).</li><li>Hwang, J. W., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Functional+clustering+of+pancreatic+islet+cells+using+concave+microwell+array.">Functional clustering of pancreatic islet cells using concave microwell array.</a> Macromol Res. 19 (12), 1320-1326 (2011).</li><li>Wong, S. F., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Concave+microwell+based+size-controllable+hepatosphere+as+a+three-dimensional+liver+tissue+model.">Concave microwell based size-controllable hepatosphere as a three-dimensional liver tissue model.</a> Biomaterials. 32 (32), 8087-8096 (2011).</li><li>Yeon, S. E., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Application+of+concave+microwells+to+pancreatic+tumor+spheroids+enabling+anticancer+drug+evaluation+in+a+clinically+relevant+drug+resistance+model.">Application of concave microwells to pancreatic tumor spheroids enabling anticancer drug evaluation in a clinically relevant drug resistance model.</a> PloS one. 8 (9), (2013).</li><li>Park, J. Y., Hwang, C. M., Lee, S. H. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Ice-lithographic+fabrication+of+concave+microwells+and+a+microfluidic+network.">Ice-lithographic fabrication of concave microwells and a microfluidic network.</a> Biomed Microdevices. 11 (1), 129-133 (2009).</li><li>Corning, D. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=.">.</a> Sylgard 184 Silicone Elastomer. Technical Data Sheet. , (2008).</li><li>Giang, U. B. T., Lee, D., King, M. R., DeLouise, L. A. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Microfabrication+of+cavities+in+polydimethylsiloxane+using+DRIE+silicon+molds.">Microfabrication of cavities in polydimethylsiloxane using DRIE silicon molds.</a> Lab on a Chip. 7 (12), 1660-1662 (2007).</li><li>Choi, J. S., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Capture+and+culturing+of+single+microalgae+cells,+and+retrieval+of+colonies+using+a+perforated+hemispherical+microwell+structure.">Capture and culturing of single microalgae cells, and retrieval of colonies using a perforated hemispherical microwell structure.</a> RSC Advances. 4 (106), 61298-61304 (2014).</li><li>Zhong, K., Gao, Y., Li, F., Zhang, Z., Luo, N. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Fabrication+of+PDMS+microlens+array+by+digital+maskless+grayscale+lithography+and+replica+molding+technique.">Fabrication of PDMS microlens array by digital maskless grayscale lithography and replica molding technique.</a> Optik. 125 (10), 2413-2416 (2014).</li><li>Lai, D., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Simple+multi-level+microchannel+fabrication+by+pseudo-grayscale+backside+diffused+light+lithography.">Simple multi-level microchannel fabrication by pseudo-grayscale backside diffused light lithography.</a> RSC advances. 3 (42), 19467-19473 (2013).</li><li>Pan, J., et al. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Fabrication+of+a+3D+hair+follicle-like+hydrogel+by+soft+lithography.">Fabrication of a 3D hair follicle-like hydrogel by soft lithography.</a> J Biomed MAter Res A. 101 (11), 3159-3169 (2013).</li><li>Mori, R., Sakai, Y., Nakazawa, K. <a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Search&doptcmdl=Citation&defaultField=Title+Word&term=Micropatterned+organoid+culture+of+rat+hepatocytes+and+HepG2+cells.">Micropatterned organoid culture of rat hepatocytes and HepG2 cells.</a> J Biosci Bioeng. 106 (3), 237-242 (2008).</li></ol>

The major challenge facing this fabrication method was the secure fixing of the beads in the through-hole array in the aluminum plate. To solve this challenge, magnetic force in the form of a 30 x 30 magnet array was used to fix the beads securely, as shown in Figures 6 and 7. The magnetic flux density of the magnet array, which has the opposite polarity, is strongest at the center of each magnet surface. Because the strength of the magnetic force depends on the flux density, the beads w...

Cells grown into a spheroid form are more similar to real tissue in the body than a two-dimensional planar culture1.&#160;Given this advantage, the use of spheroids has been adopted to improve the study of cell to cell interaction2,3, immune-activation4, drug screening5, and differentiation6. In addition, spheroids incorporating multiple cell types have recently been applied to organoids (near-physiological three-dimensional (3D) tissue), which are very useful for studying human development and disease7.&#160;Several methods have been used to produce spheroids. The simplest method involves the utilization of a non-adhesive surface, such that the cells aggregate with each other and form spheroids. A Petri dish can be treated with bovine serum albumin, pluronic F-127, or a hydrophobic polymer (e.g. poly 2-hydroxyethl methacrylate) to make its surface non-adhesive8,9. The spinner-flask method is another well-known means of producing large amounts of spheroids10,11. In this method, cells are held in suspension by stirring to prevent them from becoming attached to the substrate. Instead, the floating cells aggregate to form spheroids. Both the non-adhesive surface method and spinner flask method can produce large amounts of spheroids. However, they are subject to limitations including difficulties in controlling the spheroid size, as well as the tracking and monitoring of each spheroid. As a remedy for such problems, another spheroid production method, namely, the hanging drop method can be employed12. This involves depositing cell suspension drops onto the underside of the lid of a culture dish. These drops are usually 15 to 30 &#181;L in size and contain approximately 300 to 3000 cells13. When the lid is inverted, the drops are held in place by surface tension. The microgravity environment in each drop concentrates the cells, which then form single spheroids at the free liquid-air interface. The benefits of the hanging drop method are that it offers a well-controlled size distribution, while it is easy to trace and monitor each spheroid, relative to the non-adhesive surface and spinner flask methods. However, this method incurs one disadvantage in that the massive production of spheroids and the production process itself is excessively labor intensive.
A microwell array is a flat plate with many micro-size wells, each having a diameter ranging from 100 to 1000 &#181;m. The spheroid production principle when using microwells is similar to that of the non-adhesive surface method. Benefits include the fact that microwells provide spaces between the microwells for separating the cells or spheroids, such that it is easy to control the spheroid size, while also making it easy to monitor each single spheroid. With a large number of microwells, high-throughput spheroid production is also possible. Another advantage of microwells is the option to form wells of different shapes (hexahedral, cylindrical, trigonal prismatic) depending on the users&#39; unique experimental purposes. Generally, however, a three-dimensional (3D) concave (or hemispherical) shape is regarded as being the most suitable for producing uniform-sized single spheroids. Therefore, the usefulness of concave microwells has been reported for many cell biology studies such as those examining the cardiomyocyte differentiation of embryonic stem cells14, the insulin secretion of islet cell clusters15, the enzymatic activity of hepatocytes16, and the drug resistance of tumor spheroids17.
Unfortunately, the fabrication of microwells often requires specialized micropatterning facilities; conventional photolithography-based methods require exposure and developing facilities while reactive ion-etching-based methods need plasma and ion-beam equipment. Such equipment is costly which, together with the complicated fabrication process, presents a high barrier to entry for biologists who do not have access to microtechnology. To overcome these problems, other cost-effective methods such as ice lithography18 (using frozen water droplets) and the flexible membrane method14 (using a membrane, through-hole substrate, and a vacuum) have been suggested. However, these methods also incur serious drawbacks such as it being difficult to control the pattern sizes, the attainment of high aspect ratios, and the production of larger-area microwells.
To overcome the above issues, we are proposing a novel concave microwell fabrication method utilizing a through-hole substrate, steel beads, and a magnet array. Using this method, hundreds of concave spherical microwells can be fabricated by taking advantage of the mechanism of magnetic-force-assisted self-locking metallic beads (Figure 1). The fabrication process involves the use of very few expensive and complicated facilities and does not demand many advanced skills. As such, even unskilled persons can easily undertake this fabrication method. To demonstrate the proposed method, human-adipose-derived stem cells were cultured in the concave microwells to produce spheroids.

<table border="0" cellpadding="0" cellspacing="0" width="612">
	<tbody>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">CNC rotary engraver</td>
			<td style="width:111px;">Roland DGA</td>
			<td style="width:119px;">EGX-350</td>
			<td style="width:167px;"></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Micro drill bit</td>
			<td style="width:111px;">HAM Pr&#228;zision</td>
			<td style="width:119px;">30-1301 TA</td>
			<td>&#934; 0.55 and 0.75 mm</td>
		</tr>
		<tr height="84">
			<td height="84" style="height:84px;width:216px;">Sulfuric acid 98%</td>
			<td style="width:111px;">Daejung</td>
			<td style="width:119px;">7683-4100</td>
			<td style="width:167px;">For cleaning aluminum plate. 
			Dilute with distilled water with 15% solution</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Neodymium magnet</td>
			<td style="width:111px;">Supermagnete</td>
			<td>W-01-N</td>
			<td>1 x 1 x 1 mm</td>
		</tr>
		<tr height="42">
			<td height="42" style="height:42px;width:216px;">Bearing ball</td>
			<td style="width:111px;">Agami Modeling</td>
			<td style="width:119px;">SUJ2</td>
			<td>&#934; 600 &#956;m steel bead</td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Polydimethylsiloxane (PDMS)</td>
			<td style="width:111px;">Dowcorning</td>
			<td style="width:119px;">Sylgard 184</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Pluronic F-127</td>
			<td style="width:111px;">Sigma Aldrich</td>
			<td style="width:119px;">p2443</td>
			<td>Dilute with phosphate buffered saline to 4% (w/v) solution</td>
		</tr>
		<tr height="42">
			<td height="42" style="height:42px;width:216px;">Dulbecco&#39;s modified eaggle&#39;s medium (DMEM)</td>
			<td style="width:111px;">ATCC</td>
			<td style="width:119px;">30-2002</td>
			<td></td>
		</tr>
		<tr height="42">
			<td height="42" style="height:42px;width:216px;">Dulbecco&#39;s phosphate buffered saline (D-PBS)</td>
			<td style="width:111px;">ATCC</td>
			<td style="width:119px;">30-2200</td>
			<td></td>
		</tr>
		<tr height="21">
			<td height="21" style="height:21px;width:216px;">Fetal bovine serum</td>
			<td style="width:111px;">ATCC</td>
			<td style="width:119px;">30-2020</td>
			<td></td>
		</tr>
		<tr height="42">
			<td height="42" style="height:42px;width:216px;">Adipose-derived mesenchymal stem cells</td>
			<td style="width:111px;">ATCC</td>
			<td style="width:119px;">ATCC PCS-500-011</td>
			<td></td>
		</tr>
	</tbody>
</table>

a paired bead and magnet array for molding microwells with variable concave geometries

A spheroid culture is a useful tool for understanding cellular behavior in that it provides an in vivo-like three-dimensional environment. Various spheroid production methods such as non-adhesive surfaces, spinner flasks, hanging drops, and microwells have been used in studies of cell-to-cell interaction, immune-activation, drug screening, stem cell differentiation, and organoid generation. Among these methods, microwells with a three-dimensional concave geometry have gained the attention of scientists and engineers, given their advantages of uniform-sized spheroid generation and the ease with which the responses of individual spheroids can be monitored. Even though cost-effective methods such as the use of flexible membranes and ice lithography have been proposed, these techniques incur serious drawbacks such as difficulty in controlling the pattern sizes, achievement of high aspect ratios, and production of larger areas of microwells. To overcome these problems, we propose a robust method for fabricating concave microwells without the need for complex high-cost facilities. This method utilizes a 30 x 30 through-hole array, several hundred micrometer-order steel beads, and magnetic force to fabricate 900 microwells in a 3 cm x 3 cm polydimethylsiloxane (PDMS) substrate. To demonstrate the applicability of our method to cell biological applications, we cultured adipose stem cells for 3 days and successfully produced spheroids using our microwell platform. In addition, we performed a magnetostatic simulation to investigate the mechanism, whereby magnetic force was used to trap the steel beads in the through-holes. We believe that the proposed microwell fabrication method could be applied to many spheroid-based cellular studies such as drug screening, tissue regeneration, stem cell differentiation, and cancer metastasis.

A convex mold and microwell pattern were successfully fabricated by following steps 2.1 to 3.7. (Figure 4). The commercial steel beads were trapped in the 30 x 30 through-hole array. The beads were held tightly without any gaps between the beads and the corresponding through-holes (Figure 4a). The shape of fabricated concave microwell is concave hemispherical, with a diameter of 600 &#181;m, which is the same as that of the steel...

Watch this Scientific Journal Video about A Paired Bead and Magnet Array for Molding Microwells with Variable Concave Geometries at JoVE.com

A Paired Bead and Magnet Array for Molding Microwells with Variable Concave Geometries

This manuscript introduces a robust method of fabricating concave microwells without the need for complex high-cost facilities. Using magnetic force, steel beads, and a through-hole array, several hundred microwells were formed in a 3 cm x 3 cm polydimethylsiloxane (PDMS) substrate.

A spheroid culture is a useful tool for understanding cellular behavior in that it provides an in vivo-like three-dimensional environment. Various ...

The overall goal of this method is to fabricate concave spherical micro wells by utilizing magnetic force assisted, self locking metallic beads. Hi, my name is Gi Hun Lee, and I'm a teaching assistant at Chung-Ang University. What we are interested in our lab is fabricating various micro scale devices and platforms to enhance our studies regarding the development of a bio instrument, their culture and novel micro structures.One of our research interest is developing novel micro devices and methodologies to contract this in a three dimensional environment. We call this culture. Culture is very useful for understand three dimensional response, because it is more similar to the actual tissue, than the conventional two dimensional planar culture.Several methods for spread production have been attempted, such as in a flask or tubes, in a drum net and microwave. Among these methods, the concave micro method is very powerful tool to produce three D produce. Any pitch of the micro ware are each monitoring and the ability to control spherical sizes and distribution.Here we propose our method for fabricating concave micro wares with a bead and an array of small magnets. Using this technique, 100 of concave micro wares can be fabricated by mechanism of magnetic force assisting still beads. The augmentations are in disparate of process in each concave and no recurring proposition scales.To start off, 230 by 30 through hole array aluminum plates were made by using a CNC rotary engraver. The place provide a guide roll for the beads, as will be shown in the following sections. The placer drilled with different diameter drill bits and the plate with the smaller hole was placed at the bottom.The outer corners are also drilled in order to align the plates. The two plates are then aligned, stacked and locked together by inserting N three bolts into the limen holes and are fastened with nuts. As mentioned before, it is important for the manufacturer to place the plate with a smaller hole on the bottom, so that the beads may be fixed inside the guide wells.The next step is preparing a 30 by 30 array of neodymium magnets. We begin by manually isolating the magnets and arrange them into a two by two array. Then we align them into a larger array using tweezers.In order to make a proper magnet array, each magnet must be of the opposite polarity to its neighbor. Furthermore, to prevent breaking or scattering of the array, an aluminum plate is attached to the bottom of the magnet array using double sided tape. Now, we are ready to assemble each piece we made into micro well mold.Magnet array is carefully attached to the bottom plate using ordinary tape. It is important, that the magnet array is attached with the magnets facing downwards. After the aluminum plate and the magnet array are properly ordered, steel beads are placed on the plate assembly.the beads used in our paper are SUJ two steel beads with 600 micron diameters. Our alignment process is very simple. We pour a sufficient number of beads on the assembly and scrape them off using an acrylic plate.The magnet at the bottom traps the beads, that get into the holes of the aluminum plate and the excessive beads, which have not lodged in the holes are removed during the scraping process. The excessive beads are removed using another magnet. When the beads are properly lodged inside the guide wells, we proceed to removing the top plate.During this process, there are some cases, where the beads fall out and become displaced. In this case, manually insert the bead back into the hole using tweezers. Now the concave micro well mold is ready.Move the platform to another petri dish and prepare for the next step. We prepare PDMS by following the manufacturer's instructions by mixing PDMS monomer and the curing agent with the ration of 10 to one. To remove air bubbles trapped in the PDMS mixture, we degas the mixture by placing it in a desiccator for approximately one hour.When this is done, we take the degassed PDMS mixture and pour it onto the concave micro well mold and degas it again. Then we bake the PDMS mixture on a hot plate at 80 degrees Celsius for two hours to form imbued embedded PDMS sub tray. Next process must be carried out with great care.In order to ease the removal process, methanol is poured on the sub tray and the peripheral PDMS sub tray is removed in sequence. It should be noted, that the manufacturer should make sure, that the methanol is well permeated into the gaps to ensure a clean removal. The PDMS sub tray is then detached from the aluminum plate, it is easier to cut the edges before peeling the sub tray off.Finally, we remove the beads from the PDMS sub tray. Before removal, we stretch and flew the sub tray for some time to loosen the bonds between the beads and the PDMS sub tray. The actual removal of the beads is very easy and can be done by using a large magnet.The fabrication of concave micro wells is finished and the micro wells are ready for cell culture. To test whether our PDMS platform is suitable for culturing cells, we conducted the following procedures. First, we used a 14 millimeter diameter biopsy punch to cut the concave micro well pattern PDMS sub tray.After sterilizing the PDMS sub tray, we place it into a 24 well plate. We then coat the entire PDMS sub tray with a four percent pluronic F-127 solution overnight to prevent cells from adhering to the micro well surface. During the coating process, any air bubbles entrapped in the micro wells should be removed, either by pipetting or by using an ultra sonic cleaner.After making sure, that there are no air bubbles remaining, we seed one milliliter of cell medium solution, which will contain an approximate of two million cells onto the PDMS sub tray. Next, aspirate the medium using a 1000 microliter pipet to remove any excess cells, that were not trapped in the micro wells and everything is set for the cells to go into the incubator. A convex mold in micro well pattern was successfully fabricated, commercial steel beads were trapped in the 30 by 30 through hole array.The beads were held tightly without any gas between the beads and the corresponding through holes. The shape of the fabricated concave micro well is concave hemispherical with a diameter of 600 microns, which is the same of that of the steel bead. A cross section of a concave micro well shows, that the distance from the neighboring micro well was one millimeter, which was the same as that of the through holes.Adipose derived stem cells were cultured in the concave micro wells. We seeded two million cells on the 14 millimeter diameter concave micro well array. After 24 hours, the cells had aggregated into spheroids.The average diameter of the spheroids formed in a micro well array was 185.68 microns. At day three, the cells had become more aggregated, but the average diameter of the spheroids falling to 147 microns. Following this procedure, 100 of concave spherical micro wells can be fabricated in our cost efficient and relatively simple method.

a-paired-bead-magnet-array-for-molding-microwells-with-variable

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Investigating Receptor-ligand Systems of the Cellulosome with AFM-based Single-molecule Force Spectroscopy

Cellulosomes are discrete multienzyme complexes used by a subset of anaerobic bacteria and fungi to digest lignocellulosic substrates. Assembly of the enzymes onto the noncatalytic scaffold protein is directed by interactions among a family of related receptor-ligand pairs comprising interacting cohesin and dockerin modules. The extremely strong binding between cohesin and dockerin modules results in dissociation constants in the low picomolar to nanomolar range, which may hamper accurate off-rate measurements with conventional bulk methods. Single-molecule force spectroscopy (SMFS) with the atomic force microscope measures the response of individual biomolecules to force, and in contrast to other single-molecule manipulation methods (i.e.&#160;optical tweezers), is optimal for studying high-affinity receptor-ligand interactions because of its ability to probe the high-force regime (&#62;120 pN). Here we present our complete protocol for studying cellulosomal protein assemblies at the single-molecule level. Using a protein topology derived from the native cellulosome, we worked with enzyme-dockerin and carbohydrate binding module-cohesin (CBM-cohesin) fusion proteins, each with an accessible free thiol group at an engineered cysteine residue. We present our site-specific surface immobilization protocol, along with our measurement and data analysis procedure for obtaining detailed binding parameters for the high-affinity complex. We demonstrate how to quantify single subdomain unfolding forces, complex rupture forces, kinetic off-rates, and potential widths of the binding well. The successful application of these methods in characterizing the cohesin-dockerin interaction responsible for assembly of multidomain cellulolytic complexes is further described.

Cellulosomes are multienzyme complexes designed for digesting cellulose. AFM-based SMFS was used to study the mechanical properties and folding configuration of cellulosome-associated protein assemblies. We present a complete workflow for protein immobilization, data acquisition, and data analysis to study the interactions of individual receptor-ligand complexes involved in cellulosome assembly.

Cellulosomes are discrete multienzyme complexes used by a subset of anaerobic bacteria and fungi to digest lignocellulosic substrates. Assembly of the ...

Microfluidic Fabrication of Polymeric and Biohybrid Fibers with Predesigned Size and Shape

A &#8220;sheath&#8221; fluid passing through a microfluidic channel at low Reynolds number can be directed around another &#8220;core&#8221; stream and used to dictate the shape as well as the diameter of a core stream.&#160;Grooves in the top and bottom of a microfluidic channel were designed to direct the sheath fluid and shape the core fluid.&#160;By matching the viscosity and hydrophilicity of the sheath and core fluids, the interfacial effects are minimized and complex fluid shapes can be formed.&#160;Controlling the relative flow rates of the sheath and core fluids determines the cross-sectional area of the core fluid.&#160;Fibers have been produced with sizes ranging from 300 nm to ~1 mm, and fiber cross-sections can be round, flat, square, or complex as in the case with double anchor fibers. Polymerization of the core fluid downstream from the shaping region solidifies the fibers.&#160;Photoinitiated click chemistries are well suited for rapid polymerization of the core fluid by irradiation with ultraviolet light.&#160;Fibers with a wide variety of shapes have been produced from a list of polymers including liquid crystals, poly(methylmethacrylate), thiol-ene and thiol-yne resins, polyethylene glycol, and hydrogel derivatives. Minimal shear during the shaping process and mild polymerization conditions also makes the fabrication process well suited for encapsulation of cells and other biological components.

Two adjacent fluids passing through a grooved microfluidic channel can be directed to form a sheath around a prepolymer core; thereby&#160;determining both shape and cross-section. Photoinitiated polymerization, such as thiol click chemistry, is well suited for rapidly solidifying the core fluid into a microfiber with predetermined size and shape.

A &#8220;sheath&#8221; fluid passing through a microfluidic channel at low Reynolds number can be directed around another &#8220;core&#8221; stream and ...

Rapid and Low-cost Prototyping of Medical Devices Using 3D Printed Molds for Liquid Injection Molding

Biologically inert elastomers such as silicone are favorable materials for medical device fabrication, but forming and curing these elastomers using traditional liquid injection molding processes can be an expensive process due to tooling and equipment costs. As a result, it has traditionally been impractical to use liquid injection molding for low-cost, rapid prototyping applications. We have devised a method for rapid and low-cost production of liquid elastomer injection molded devices that utilizes fused deposition modeling 3D printers for mold design and a modified desiccator as an injection system. Low costs and rapid turnaround time in this technique lower the barrier to iteratively designing and prototyping complex elastomer devices. Furthermore, CAD models developed in this process can be later adapted for metal mold tooling design, enabling an easy transition to a traditional injection molding process. We have used this technique to manufacture intravaginal probes involving complex geometries, as well as overmolding over metal parts, using tools commonly available within an academic research laboratory. However, this technique can be easily adapted to create liquid injection molded devices for many other applications.

We have devised a method for low-cost and rapid prototyping of liquid elastomer rubber injection molded devices by using fused deposition modeling 3D printers for mold design and a modified desiccator as a liquid injection system.

Biologically inert elastomers such as silicone are favorable materials for medical device fabrication, but forming and curing these elastomers using ...

Bead Aggregation Assays for the Characterization of Putative Cell Adhesion Molecules

Cell-cell adhesion is fundamental to multicellular life and is mediated by a diverse array of cell surface proteins. However, the adhesive interactions for many of these proteins are poorly understood. Here we present a simple, rapid method for characterizing the adhesive properties of putative homophilic cell adhesion molecules. Cultured HEK293 cells are transfected with DNA plasmid encoding a secreted, epitope-tagged ectodomain of a cell surface protein. Using functionalized beads specific for the epitope tag, the soluble, secreted fusion protein is captured from the culture medium. The coated beads can then be used directly in bead aggregation assays or in fluorescent bead sorting assays to test for homophilic adhesion. If desired, mutagenesis can then be used to elucidate the specific amino acids or domains required for adhesion. This assay requires only small amounts of expressed protein, does not require the production of stable cell lines, and can be accomplished in 4 days.

Here we present a simple, rapid method for characterizing the intrinsic adhesive properties of putative cell adhesion molecules. The secreted, epitope-tagged ectodomain of a cell adhesion molecule is captured from the culture medium on small, uniform functionalized beads. These beads can then be used immediately in simple bead aggregation assays.

Cell-cell adhesion is fundamental to multicellular life and is mediated by a diverse array of cell surface proteins. However, the adhesive interactions ...

Polymeric Microneedle Array Fabrication by Photolithography

This manuscript describes the fabrication of polymeric microneedle (MN) arrays by photolithography. It involves a simple mold-free process by using a photomask consisting of embedded micro-lenses. Embedded micro-lenses were found to influence MN geometry (sharpness). Robust MN arrays with tip diameters ranging between 41.5 &#181;m &#177; 8.4 &#181;m and 71.6 &#181;m &#177; 13.7 &#181;m, with two different lengths (1,336 &#181;m &#177; 193 &#181;m and 957 &#181;m &#177; 171 &#181;m) were fabricated. These MN arrays may provide potential applications in delivery of low molecular and macromolecular therapeutic agents through skin.

Here, we present a protocol describing a mold-free fabrication process of the polymeric microneedles by photolithography.

This manuscript describes the fabrication of polymeric microneedle (MN) arrays by photolithography. It involves a simple mold-free process by using a ...

Multi-step Variable Height Photolithography for Valved Multilayer Microfluidic Devices

Microfluidic systems have enabled powerful new approaches to high-throughput biochemical and biological analysis. However, there remains a barrier to entry for non-specialists who would benefit greatly from the ability to develop their own microfluidic devices to address research questions. Particularly lacking has been the open dissemination of protocols related to photolithography, a key step in the development of a replica mold for the manufacture of polydimethylsiloxane (PDMS) devices. While the fabrication of single height silicon masters has been explored extensively in literature, fabrication steps for more complicated photolithography features necessary for many interesting device functionalities (such as feature rounding to make valve structures, multi-height single-mold patterning, or high aspect ratio definition) are often not explicitly outlined. 
Here, we provide a complete protocol for making multilayer microfluidic devices with valves and complex multi-height geometries, tunable for any application. These fabrication procedures are presented in the context of a microfluidic hydrogel bead synthesizer and demonstrate the production of droplets containing polyethylene glycol (PEG diacrylate) and a photoinitiator that can be polymerized into solid beads. This protocol and accompanying discussion provide a foundation of design principles and fabrication methods that enables development of a wide variety of microfluidic devices. The details included here should allow non-specialists to design and fabricate novel devices, thereby bringing a host of recently developed technologies to their most exciting applications in biological laboratories.

Multilayer microfluidic devices often involve the fabrication of master molds with complex geometries for functionality. This article presents a complete protocol for multi-step photolithography with valves and variable height features tunable to any application. As a demonstration, we fabricate a microfluidic droplet generator capable of producing hydrogel beads.

Microfluidic systems have enabled powerful new approaches to high-throughput biochemical and biological analysis. However, there remains a barrier to ...

Assembly and Tracking of Microbial Community Development within a Microwell Array Platform

The development of microbial communities depends on a combination of complex deterministic and stochastic factors that can dramatically alter the spatial distribution and activities of community members. We have developed a microwell array platform that can be used to rapidly assemble and track thousands of bacterial communities in parallel. This protocol highlights the utility of the platform and describes its use for optically monitoring the development of simple, two-member communities within an ensemble of arrays within the platform. This demonstration uses two mutants of Pseudomonas aeruginosa, part of a series of mutants developed to study Type VI secretion pathogenicity. Chromosomal inserts of either mCherry or GFP genes facilitate the constitutive expression of fluorescent proteins with distinct emission wavelengths that can be used to monitor community member abundance and location within each microwell. This protocol describes a detailed method for assembling mixtures of bacteria into the wells of the array and using time-lapse fluorescence imaging and quantitative image analysis to measure the relative growth of each member population over time. The seeding and assembly of the microwell platform, the imaging procedures necessary for the quantitative analysis of microbial communities within the array, and the methods that can be used to reveal interactions between microbial species area all discussed.

The development of microbial communities depends on a combination of factors, including environmental architecture, member abundance, traits, and interactions. This protocol describes a synthetic, microfabricated environment for the simultaneous tracking of thousands of communities contained in femtoliter wells, where key factors such as niche size and confinement can be approximated.

The development of microbial communities depends on a combination of complex deterministic and stochastic factors that can dramatically alter the spatial ...

Visual Detection of Multiple Nucleic Acids in a Capillary Array

Multi-target, short time, and resource-affordable methodologies for the detection of multiple nucleic acids in a single, easy to operate test are urgently needed in disease diagnosis, microbial monitoring, genetically modified organism (GMO) detection, and forensic analysis. We have previously described the platform called CALM (Capillary Array-based Loop-mediated isothermal amplification for Multiplex visual detection of nucleic acids). Herein, we describe improved fabrication and performance processes for this platform. Here, we apply a small, ready-to-use cassette assembled by capillary array for multiplex visual detection of nucleic acids. The capillary array is pre-treated into a hydrophobic and hydrophilic pattern before fixing loop-mediated isothermal amplification (LAMP) primer sets in capillaries. After assembly of the loading adaptor, LAMP reaction mixture is loaded and isolated into each capillary, due to capillary force by a single pipetting step. The LAMP reactions are performed in parallel in the capillaries. The results are visually read out by illumination with a hand-held UV flashlight. Using this platform, we demonstrate monitoring of 8 frequently appearing elements and genes in GMO samples with high specificity and sensitivity. In summary, the platform described herein is intended to facilitate the detection of multiple nucleic acids. We believe it will be widely applicable in fields where high-throughput nucleic acid analysis is required.

This protocol describes the fabrication of a small, ready-to-use cassette that can be applied for visual detection of multiple nucleic acids in a single, test that is easy to operate. In this approach, a capillary array was used for multiplex and highly efficient detection of GMO targets.

Multi-target, short time, and resource-affordable methodologies for the detection of multiple nucleic acids in a single, easy to operate test are urgently ...

Fabrication of a Multiplexed Artificial Cellular MicroEnvironment Array

Cellular microenvironments consist of a variety of cues, such as growth factors, extracellular matrices, and intercellular interactions. These cues are well orchestrated and are crucial in regulating cell functions in a living system. Although a number of researchers have attempted to investigate the correlation between environmental factors and desired cellular functions, much remains unknown. This is largely due to the lack of a proper methodology to mimic such environmental cues in vitro, and simultaneously test different environmental cues on cells. Here, we report an integrated platform of microfluidic channels and a nanofiber array, followed by high-content single-cell analysis, to examine stem cell phenotypes altered by distinct environmental factors. To demonstrate the application of this platform, this study focuses on the phenotypes of self-renewing human pluripotent stem cells (hPSCs). Here, we present the preparation procedures for a nanofiber array and the microfluidic structure in the fabrication of a Multiplexed Artificial Cellular MicroEnvironment (MACME) array. Moreover, overall steps of the single-cell profiling, cell staining with multiple fluorescent markers, multiple fluorescence imaging, and statistical analyses, are described.

This article describes the detailed methodology to prepare a Multiplexed Artificial Cellular MicroEnvironment (MACME) array for high-throughput manipulation of physical and chemical cues mimicking in vivo cellular microenvironments and to identify the optimal cellular environment for human pluripotent stem cells (hPSCs) with single-cell profiling.

Cellular microenvironments consist of a variety of cues, such as growth factors, extracellular matrices, and intercellular interactions. These cues are ...

Conducting Multiple Imaging Modes with One Fluorescence Microscope

Fluorescence microscopy is a powerful tool to detect biological molecules in situ and monitor their dynamics and interactions in real-time. In addition to conventional epi-fluorescence microscopy, various imaging techniques have been developed to achieve specific experimental goals. Some of the widely used techniques include single-molecule fluorescence resonance energy transfer (smFRET), which can report conformational changes and molecular interactions with angstrom resolution, and single-molecule detection-based super-resolution (SR) imaging, which can enhance the spatial resolution approximately ten&#160;to twentyfold compared to diffraction-limited microscopy. Here we present a customer-designed integrated system, which merges multiple imaging methods in one microscope, including conventional epi-fluorescent imaging, single-molecule detection-based SR imaging, and multi-color single-molecule detection, including smFRET imaging. Different imaging methods can be achieved easily and reproducibly by switching optical elements. This set-up is easy to adopt by any research laboratory in biological sciences with a need for routine and diverse imaging experiments at a reduced cost and space relative to building separate microscopes for individual purposes.

Here we present a practical guide of building an integrated microscopy system, which merges conventional epi-fluorescent imaging, single-molecule detection-based super-resolution imaging, and multi-color single-molecule detection, including single-molecule fluorescence resonance energy transfer imaging, into one set-up in a cost-efficient way.

Fluorescence microscopy is a powerful tool to detect biological molecules in situ and monitor their dynamics and interactions in real-time. In addition to ...